Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c26590

Experiment: m.b. nitrite 8 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. nitrite 8 mM
2,772,560	+		PGA1_c26580	0.50	-3.6
2,772,560	+		PGA1_c26580	0.50	-1.4
2,772,600	-		PGA1_c26580	0.52	-0.2
2,772,600	-		PGA1_c26580	0.52	+0.6
2,772,624	+		PGA1_c26580	0.54	+1.3
2,772,714	+		PGA1_c26580	0.59	-1.3
2,772,722	-		PGA1_c26580	0.60	+0.1
2,772,800	+		PGA1_c26580	0.64	-0.6
2,772,902	+		PGA1_c26580	0.70	-1.6
2,772,917	-		PGA1_c26580	0.71	+1.5
2,772,918	+		PGA1_c26580	0.71	+2.3
2,772,918	+		PGA1_c26580	0.71	+3.6
2,772,919	-		PGA1_c26580	0.71	+2.5
2,773,061	-		PGA1_c26580	0.80	-1.7
2,773,062	-		PGA1_c26580	0.80	+0.0
2,773,143	-		PGA1_c26580	0.85	-2.2
2,773,255	+				-0.8
2,773,267	-				+1.8
2,773,323	+				+0.3
2,773,328	+				+0.4
2,773,328	+				-3.2
2,773,338	+				-0.4
2,773,346	-				-0.3
2,773,435	-				+1.5
2,773,484	+				-2.5
2,773,494	+				+1.0
2,773,538	+				+1.0
2,773,591	+				-1.6
2,773,591	+				-2.6
2,773,593	+				+0.5
2,773,599	-				+1.2
2,773,599	-				+0.9
2,773,718	+				-1.3
2,773,726	-		PGA1_c26590	0.10	+1.2
2,773,726	-		PGA1_c26590	0.10	+0.3
2,773,726	-		PGA1_c26590	0.10	-2.6
2,773,737	+		PGA1_c26590	0.11	-0.1
2,773,745	-		PGA1_c26590	0.11	-0.7
2,773,750	-		PGA1_c26590	0.11	-1.2
2,773,784	-		PGA1_c26590	0.13	-0.6
2,773,839	-		PGA1_c26590	0.16	-0.8
2,773,868	+		PGA1_c26590	0.17	+3.1
2,773,874	-		PGA1_c26590	0.17	-2.1
2,773,961	-		PGA1_c26590	0.22	-1.1
2,774,035	-		PGA1_c26590	0.25	+1.1
2,774,036	+		PGA1_c26590	0.25	-1.6
2,774,080	-		PGA1_c26590	0.28	+1.2
2,774,109	-		PGA1_c26590	0.29	-2.4
2,774,131	+		PGA1_c26590	0.30	-0.4
2,774,197	+		PGA1_c26590	0.33	+1.5
2,774,197	+		PGA1_c26590	0.33	+0.0
2,774,197	+		PGA1_c26590	0.33	+1.7
2,774,205	-		PGA1_c26590	0.34	-2.2
2,774,231	+		PGA1_c26590	0.35	+0.5
2,774,239	-		PGA1_c26590	0.35	+0.7
2,774,246	-		PGA1_c26590	0.36	+0.6
2,774,265	+		PGA1_c26590	0.37	-0.6
2,774,295	-		PGA1_c26590	0.38	-0.5
2,774,360	+		PGA1_c26590	0.41	+0.6
2,774,368	-		PGA1_c26590	0.42	-0.3
2,774,551	-		PGA1_c26590	0.51	+0.8
2,774,597	+		PGA1_c26590	0.53	-1.6
2,774,619	-		PGA1_c26590	0.54	+0.4
2,774,623	+		PGA1_c26590	0.55	+1.6
2,774,640	+		PGA1_c26590	0.55	-0.8
2,774,648	-		PGA1_c26590	0.56	-1.6
2,774,697	+		PGA1_c26590	0.58	+0.9
2,774,704	-		PGA1_c26590	0.59	-1.9
2,774,820	-		PGA1_c26590	0.64	+1.5
2,774,820	-		PGA1_c26590	0.64	+0.8
2,774,840	+		PGA1_c26590	0.65	-2.3
2,774,889	-		PGA1_c26590	0.68	+1.2
2,774,910	-		PGA1_c26590	0.69	+0.4
2,774,914	+		PGA1_c26590	0.69	+0.5
2,774,961	-		PGA1_c26590	0.71	+1.6
2,774,967	+		PGA1_c26590	0.72	+0.0
2,774,968	+		PGA1_c26590	0.72	+5.2
2,775,020	+		PGA1_c26590	0.74	-0.8
2,775,078	+		PGA1_c26590	0.77	+1.7
2,775,078	+		PGA1_c26590	0.77	+0.9
2,775,086	-		PGA1_c26590	0.77	+0.9
2,775,091	+		PGA1_c26590	0.78	+1.4
2,775,093	+		PGA1_c26590	0.78	-3.0
2,775,101	-		PGA1_c26590	0.78	+1.3
2,775,101	-		PGA1_c26590	0.78	-0.5
2,775,170	+		PGA1_c26590	0.82	+0.7
2,775,193	+		PGA1_c26590	0.83	+1.0
2,775,289	+		PGA1_c26590	0.88	+0.1
2,775,297	-		PGA1_c26590	0.88	-0.3
2,775,313	+		PGA1_c26590	0.89	+0.7
2,775,417	+				-1.3
2,775,432	-				-0.6
2,775,436	-				+1.5
2,775,447	+				-0.7
2,775,455	-				-3.1
2,775,455	-				+0.6
2,775,455	-				+1.0
2,775,525	-				-2.1
2,775,569	-				+2.0
2,775,663	-				+0.5
2,775,676	+				+1.8
2,775,703	-				-0.6
2,775,707	+				-2.1
2,775,726	-		PGA1_c26600	0.11	+2.7
2,775,731	+		PGA1_c26600	0.12	-0.6
2,775,731	+		PGA1_c26600	0.12	+0.3
2,775,739	-		PGA1_c26600	0.13	+1.2
2,775,772	+		PGA1_c26600	0.17	-3.0
2,775,785	+		PGA1_c26600	0.18	+0.6
2,775,794	+		PGA1_c26600	0.19	+0.9
2,775,806	+		PGA1_c26600	0.21	-0.1
2,775,806	+		PGA1_c26600	0.21	+0.9
2,775,825	+		PGA1_c26600	0.23	+3.1
2,775,825	-		PGA1_c26600	0.23	-1.2
2,775,826	+		PGA1_c26600	0.23	+0.9
2,775,866	+		PGA1_c26600	0.28	+0.7
2,775,940	+		PGA1_c26600	0.37	-0.2
2,775,986	+		PGA1_c26600	0.43	+0.2
2,776,066	+		PGA1_c26600	0.52	-0.6
2,776,075	-		PGA1_c26600	0.53	-0.5
2,776,124	+		PGA1_c26600	0.59	-0.1
2,776,135	+		PGA1_c26600	0.61	+0.3
2,776,135	+		PGA1_c26600	0.61	+1.2
2,776,180	+		PGA1_c26600	0.66	+0.2
2,776,188	-		PGA1_c26600	0.67	-0.2
2,776,295	+		PGA1_c26600	0.80	+1.7
2,776,303	-		PGA1_c26600	0.81	-2.4
2,776,303	-		PGA1_c26600	0.81	-2.6
2,776,323	-		PGA1_c26600	0.84	-2.1
2,776,342	+		PGA1_c26600	0.86	+1.9
2,776,354	+		PGA1_c26600	0.87	+0.4
2,776,429	-				+0.1
2,776,436	+				-1.3
2,776,439	-				-0.7
2,776,450	-				+0.5
2,776,465	-				-1.0
2,776,504	+				-0.1
2,776,514	+				+0.3
2,776,522	-				-0.3