Strain Fitness in Marinobacter adhaerens HP15 around HP15_2461

Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2459 and HP15_2460 are separated by 44 nucleotidesHP15_2460 and HP15_2461 are separated by 151 nucleotidesHP15_2461 and HP15_2462 are separated by 160 nucleotides HP15_2459: HP15_2459 - MiaB-like tRNA modifying enzyme YliG, at 2,598,609 to 2,599,955 _2459 HP15_2460: HP15_2460 - hypothetical protein, at 2,600,000 to 2,600,119 _2460 HP15_2461: HP15_2461 - type IV pilus assembly PilZ, at 2,600,271 to 2,600,681 _2461 HP15_2462: HP15_2462 - sulfate adenylyltransferase, small subunit, at 2,600,842 to 2,601,750 _2462 Position (kb) 2600 2601Strain fitness (log2 ratio) -2 -1 0 1 2at 2599.371 kb on - strand, within HP15_2459at 2599.395 kb on + strand, within HP15_2459at 2599.449 kb on + strand, within HP15_2459at 2599.481 kb on + strand, within HP15_2459at 2599.510 kb on + strand, within HP15_2459at 2599.510 kb on + strand, within HP15_2459at 2599.510 kb on + strand, within HP15_2459at 2599.815 kb on + strand, within HP15_2459at 2599.820 kb on + strand, within HP15_2459at 2599.840 kb on + strandat 2599.848 kb on - strandat 2599.848 kb on - strandat 2599.848 kb on - strandat 2599.885 kb on + strandat 2599.936 kb on - strandat 2599.949 kb on - strandat 2600.032 kb on - strand, within HP15_2460at 2600.263 kb on - strandat 2600.376 kb on + strand, within HP15_2461at 2600.453 kb on + strand, within HP15_2461at 2600.550 kb on + strand, within HP15_2461at 2600.578 kb on + strand, within HP15_2461at 2600.675 kb on + strandat 2600.718 kb on - strandat 2600.775 kb on - strandat 2600.798 kb on + strandat 2600.816 kb on - strandat 2600.966 kb on - strand, within HP15_2462at 2600.977 kb on - strand, within HP15_2462at 2600.977 kb on - strand, within HP15_2462at 2600.980 kb on + strand, within HP15_2462at 2601.087 kb on - strand, within HP15_2462at 2601.092 kb on + strand, within HP15_2462at 2601.124 kb on + strand, within HP15_2462at 2601.159 kb on - strand, within HP15_2462at 2601.234 kb on + strand, within HP15_2462at 2601.301 kb on + strand, within HP15_2462at 2601.372 kb on + strandat 2601.380 kb on - strand, within HP15_2462at 2601.390 kb on - strand, within HP15_2462at 2601.415 kb on - strand, within HP15_2462at 2601.598 kb on + strand, within HP15_2462at 2601.603 kb on + strand, within HP15_2462

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium lysine 5 mM
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2,599,371 - HP15_2459 0.57 -0.3
2,599,395 + HP15_2459 0.58 -0.5
2,599,449 + HP15_2459 0.62 -0.7
2,599,481 + HP15_2459 0.65 -0.4
2,599,510 + HP15_2459 0.67 -1.0
2,599,510 + HP15_2459 0.67 +1.6
2,599,510 + HP15_2459 0.67 +0.0
2,599,815 + HP15_2459 0.90 -0.2
2,599,820 + HP15_2459 0.90 -1.0
2,599,840 + -1.3
2,599,848 - -0.5
2,599,848 - -1.4
2,599,848 - +0.0
2,599,885 + -0.9
2,599,936 - -0.3
2,599,949 - -1.3
2,600,032 - HP15_2460 0.27 +0.1
2,600,263 - +0.8
2,600,376 + HP15_2461 0.26 -0.7
2,600,453 + HP15_2461 0.44 +1.2
2,600,550 + HP15_2461 0.68 +1.1
2,600,578 + HP15_2461 0.75 +0.5
2,600,675 + -0.4
2,600,718 - +0.5
2,600,775 - +0.4
2,600,798 + +0.6
2,600,816 - -0.5
2,600,966 - HP15_2462 0.14 +0.0
2,600,977 - HP15_2462 0.15 +0.2
2,600,977 - HP15_2462 0.15 +1.9
2,600,980 + HP15_2462 0.15 -0.8
2,601,087 - HP15_2462 0.27 +0.8
2,601,092 + HP15_2462 0.28 -0.9
2,601,124 + HP15_2462 0.31 -1.8
2,601,159 - HP15_2462 0.35 -0.1
2,601,234 + HP15_2462 0.43 -0.5
2,601,301 + HP15_2462 0.50 -0.0
2,601,372 + +1.4
2,601,380 - HP15_2462 0.59 +0.2
2,601,390 - HP15_2462 0.60 -0.3
2,601,415 - HP15_2462 0.63 -0.8
2,601,598 + HP15_2462 0.83 -0.8
2,601,603 + HP15_2462 0.84 +2.0

Or see this region's nucleotide sequence