Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c24620

Experiment: m.b. nitrite 8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c24610 and PGA1_c24620 are separated by 11 nucleotidesPGA1_c24620 and PGA1_c24630 are separated by 3 nucleotidesPGA1_c24630 and PGA1_c24640 are separated by 210 nucleotides PGA1_c24610: PGA1_c24610 - integral membrane protein, AcrB/AcrD/AcrF family, at 2,566,830 to 2,569,874 _c24610 PGA1_c24620: PGA1_c24620 - putative secretion protein, at 2,569,886 to 2,570,929 _c24620 PGA1_c24630: PGA1_c24630 - transcriptional regulator, MarR family, at 2,570,933 to 2,571,430 _c24630 PGA1_c24640: PGA1_c24640 - putative 3-oxoacyl-[acyl-carrier-protein] synthase 3, at 2,571,641 to 2,572,765 _c24640 Position (kb) 2569 2570 2571Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2568.926 kb on + strand, within PGA1_c24610at 2568.934 kb on + strand, within PGA1_c24610at 2568.934 kb on - strand, within PGA1_c24610at 2568.934 kb on - strand, within PGA1_c24610at 2568.983 kb on + strand, within PGA1_c24610at 2569.008 kb on + strand, within PGA1_c24610at 2569.035 kb on + strand, within PGA1_c24610at 2569.035 kb on + strand, within PGA1_c24610at 2569.037 kb on + strand, within PGA1_c24610at 2569.043 kb on - strand, within PGA1_c24610at 2569.054 kb on - strand, within PGA1_c24610at 2569.120 kb on + strand, within PGA1_c24610at 2569.204 kb on + strand, within PGA1_c24610at 2569.251 kb on - strand, within PGA1_c24610at 2569.257 kb on + strand, within PGA1_c24610at 2569.281 kb on + strand, within PGA1_c24610at 2569.294 kb on - strand, within PGA1_c24610at 2569.428 kb on + strand, within PGA1_c24610at 2569.428 kb on + strand, within PGA1_c24610at 2569.430 kb on - strand, within PGA1_c24610at 2569.502 kb on - strand, within PGA1_c24610at 2569.552 kb on - strand, within PGA1_c24610at 2569.557 kb on - strand, within PGA1_c24610at 2569.557 kb on - strand, within PGA1_c24610at 2569.558 kb on + strand, within PGA1_c24610at 2569.574 kb on + strandat 2569.574 kb on + strandat 2569.574 kb on + strandat 2569.581 kb on + strandat 2569.618 kb on + strandat 2569.711 kb on - strandat 2569.729 kb on - strandat 2569.747 kb on - strandat 2569.753 kb on - strandat 2569.925 kb on - strandat 2569.941 kb on + strandat 2569.975 kb on + strandat 2569.975 kb on + strandat 2570.030 kb on - strand, within PGA1_c24620at 2570.087 kb on + strand, within PGA1_c24620at 2570.087 kb on + strand, within PGA1_c24620at 2570.147 kb on - strand, within PGA1_c24620at 2570.223 kb on + strand, within PGA1_c24620at 2570.233 kb on + strand, within PGA1_c24620at 2570.233 kb on + strand, within PGA1_c24620at 2570.241 kb on + strand, within PGA1_c24620at 2570.241 kb on - strand, within PGA1_c24620at 2570.241 kb on - strand, within PGA1_c24620at 2570.278 kb on + strand, within PGA1_c24620at 2570.330 kb on + strand, within PGA1_c24620at 2570.388 kb on - strand, within PGA1_c24620at 2570.435 kb on - strand, within PGA1_c24620at 2570.437 kb on - strand, within PGA1_c24620at 2570.513 kb on + strand, within PGA1_c24620at 2570.521 kb on - strand, within PGA1_c24620at 2570.528 kb on + strand, within PGA1_c24620at 2570.597 kb on + strand, within PGA1_c24620at 2570.649 kb on - strand, within PGA1_c24620at 2570.649 kb on - strand, within PGA1_c24620at 2570.766 kb on - strand, within PGA1_c24620at 2570.770 kb on + strand, within PGA1_c24620at 2570.832 kb on - strandat 2570.832 kb on - strandat 2570.832 kb on - strandat 2570.844 kb on + strandat 2570.911 kb on + strandat 2570.930 kb on + strandat 2571.022 kb on + strand, within PGA1_c24630at 2571.049 kb on + strand, within PGA1_c24630at 2571.127 kb on + strand, within PGA1_c24630at 2571.141 kb on - strand, within PGA1_c24630at 2571.194 kb on + strand, within PGA1_c24630at 2571.213 kb on + strand, within PGA1_c24630at 2571.213 kb on + strand, within PGA1_c24630at 2571.268 kb on - strand, within PGA1_c24630at 2571.292 kb on + strand, within PGA1_c24630at 2571.292 kb on + strand, within PGA1_c24630at 2571.310 kb on - strand, within PGA1_c24630at 2571.324 kb on + strand, within PGA1_c24630at 2571.327 kb on - strand, within PGA1_c24630at 2571.332 kb on - strand, within PGA1_c24630at 2571.332 kb on - strand, within PGA1_c24630at 2571.332 kb on - strand, within PGA1_c24630at 2571.332 kb on - strand, within PGA1_c24630at 2571.332 kb on - strandat 2571.369 kb on - strand, within PGA1_c24630at 2571.369 kb on - strand, within PGA1_c24630at 2571.379 kb on - strand, within PGA1_c24630at 2571.379 kb on - strand, within PGA1_c24630at 2571.482 kb on - strandat 2571.566 kb on + strandat 2571.571 kb on + strandat 2571.571 kb on + strandat 2571.571 kb on + strandat 2571.571 kb on + strandat 2571.571 kb on + strandat 2571.571 kb on + strandat 2571.571 kb on + strandat 2571.571 kb on + strandat 2571.579 kb on - strandat 2571.585 kb on + strandat 2571.639 kb on - strandat 2571.639 kb on - strandat 2571.717 kb on - strandat 2571.732 kb on - strandat 2571.739 kb on + strandat 2571.742 kb on - strandat 2571.746 kb on - strandat 2571.768 kb on - strand, within PGA1_c24640at 2571.781 kb on - strand, within PGA1_c24640at 2571.793 kb on - strand, within PGA1_c24640at 2571.838 kb on + strand, within PGA1_c24640at 2571.838 kb on + strand, within PGA1_c24640at 2571.838 kb on + strand, within PGA1_c24640at 2571.838 kb on + strand, within PGA1_c24640at 2571.846 kb on - strand, within PGA1_c24640at 2571.846 kb on - strand, within PGA1_c24640at 2571.846 kb on - strand, within PGA1_c24640at 2571.924 kb on - strand, within PGA1_c24640at 2571.927 kb on + strand, within PGA1_c24640

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 8 mM
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2,568,926 + PGA1_c24610 0.69 -0.6
2,568,934 + PGA1_c24610 0.69 -1.1
2,568,934 - PGA1_c24610 0.69 -0.9
2,568,934 - PGA1_c24610 0.69 +1.5
2,568,983 + PGA1_c24610 0.71 +0.6
2,569,008 + PGA1_c24610 0.72 -0.9
2,569,035 + PGA1_c24610 0.72 -0.6
2,569,035 + PGA1_c24610 0.72 -0.7
2,569,037 + PGA1_c24610 0.72 -0.3
2,569,043 - PGA1_c24610 0.73 -0.2
2,569,054 - PGA1_c24610 0.73 +0.7
2,569,120 + PGA1_c24610 0.75 +0.4
2,569,204 + PGA1_c24610 0.78 +1.1
2,569,251 - PGA1_c24610 0.80 -0.9
2,569,257 + PGA1_c24610 0.80 -1.2
2,569,281 + PGA1_c24610 0.80 -0.3
2,569,294 - PGA1_c24610 0.81 +0.3
2,569,428 + PGA1_c24610 0.85 +0.9
2,569,428 + PGA1_c24610 0.85 -1.7
2,569,430 - PGA1_c24610 0.85 -0.4
2,569,502 - PGA1_c24610 0.88 -1.9
2,569,552 - PGA1_c24610 0.89 -0.1
2,569,557 - PGA1_c24610 0.90 -3.2
2,569,557 - PGA1_c24610 0.90 +0.3
2,569,558 + PGA1_c24610 0.90 +0.9
2,569,574 + -0.2
2,569,574 + +0.2
2,569,574 + -0.2
2,569,581 + -0.8
2,569,618 + -0.9
2,569,711 - +0.8
2,569,729 - +1.9
2,569,747 - +1.0
2,569,753 - -0.2
2,569,925 - -2.2
2,569,941 + +0.9
2,569,975 + +0.8
2,569,975 + -2.7
2,570,030 - PGA1_c24620 0.14 -2.1
2,570,087 + PGA1_c24620 0.19 -3.2
2,570,087 + PGA1_c24620 0.19 -0.8
2,570,147 - PGA1_c24620 0.25 -1.0
2,570,223 + PGA1_c24620 0.32 -1.9
2,570,233 + PGA1_c24620 0.33 -0.5
2,570,233 + PGA1_c24620 0.33 -2.5
2,570,241 + PGA1_c24620 0.34 +0.3
2,570,241 - PGA1_c24620 0.34 +0.7
2,570,241 - PGA1_c24620 0.34 -0.6
2,570,278 + PGA1_c24620 0.38 -1.7
2,570,330 + PGA1_c24620 0.43 -0.1
2,570,388 - PGA1_c24620 0.48 -1.4
2,570,435 - PGA1_c24620 0.53 -0.5
2,570,437 - PGA1_c24620 0.53 -2.7
2,570,513 + PGA1_c24620 0.60 -0.9
2,570,521 - PGA1_c24620 0.61 +1.6
2,570,528 + PGA1_c24620 0.61 +0.9
2,570,597 + PGA1_c24620 0.68 +1.5
2,570,649 - PGA1_c24620 0.73 -2.4
2,570,649 - PGA1_c24620 0.73 -1.3
2,570,766 - PGA1_c24620 0.84 -0.2
2,570,770 + PGA1_c24620 0.85 -0.5
2,570,832 - -0.3
2,570,832 - +1.1
2,570,832 - -2.0
2,570,844 + -3.3
2,570,911 + -3.1
2,570,930 + +1.0
2,571,022 + PGA1_c24630 0.18 +0.2
2,571,049 + PGA1_c24630 0.23 -1.1
2,571,127 + PGA1_c24630 0.39 +0.5
2,571,141 - PGA1_c24630 0.42 +0.6
2,571,194 + PGA1_c24630 0.52 -3.2
2,571,213 + PGA1_c24630 0.56 -0.4
2,571,213 + PGA1_c24630 0.56 +0.3
2,571,268 - PGA1_c24630 0.67 -1.9
2,571,292 + PGA1_c24630 0.72 +0.9
2,571,292 + PGA1_c24630 0.72 -0.7
2,571,310 - PGA1_c24630 0.76 +0.1
2,571,324 + PGA1_c24630 0.79 -0.1
2,571,327 - PGA1_c24630 0.79 +1.5
2,571,332 - PGA1_c24630 0.80 -0.1
2,571,332 - PGA1_c24630 0.80 +1.1
2,571,332 - PGA1_c24630 0.80 -2.2
2,571,332 - PGA1_c24630 0.80 -1.2
2,571,332 - -0.1
2,571,369 - PGA1_c24630 0.88 -1.3
2,571,369 - PGA1_c24630 0.88 -0.0
2,571,379 - PGA1_c24630 0.90 -1.3
2,571,379 - PGA1_c24630 0.90 -2.6
2,571,482 - -2.6
2,571,566 + -0.6
2,571,571 + +0.4
2,571,571 + -3.1
2,571,571 + +0.5
2,571,571 + -1.6
2,571,571 + +0.0
2,571,571 + +2.1
2,571,571 + -2.2
2,571,571 + -1.5
2,571,579 - -0.6
2,571,585 + -2.4
2,571,639 - +1.1
2,571,639 - -0.1
2,571,717 - +0.5
2,571,732 - -0.9
2,571,739 + -0.7
2,571,742 - -0.8
2,571,746 - +1.6
2,571,768 - PGA1_c24640 0.11 -0.2
2,571,781 - PGA1_c24640 0.12 -3.6
2,571,793 - PGA1_c24640 0.14 +0.5
2,571,838 + PGA1_c24640 0.18 +0.6
2,571,838 + PGA1_c24640 0.18 +0.7
2,571,838 + PGA1_c24640 0.18 -0.7
2,571,838 + PGA1_c24640 0.18 -0.7
2,571,846 - PGA1_c24640 0.18 +0.1
2,571,846 - PGA1_c24640 0.18 -0.5
2,571,846 - PGA1_c24640 0.18 -2.7
2,571,924 - PGA1_c24640 0.25 -2.4
2,571,927 + PGA1_c24640 0.25 +1.5

Or see this region's nucleotide sequence