Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c23120

Experiment: m.b. nitrite 8 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. nitrite 8 mM
2,395,932	-		PGA1_c23110	0.47	-0.1
2,395,981	+		PGA1_c23110	0.50	-0.8
2,395,981	+		PGA1_c23110	0.50	+0.5
2,395,981	+		PGA1_c23110	0.50	-0.1
2,395,981	+		PGA1_c23110	0.50	+0.2
2,395,981	+		PGA1_c23110	0.50	+0.8
2,395,981	+		PGA1_c23110	0.50	-0.1
2,395,981	+		PGA1_c23110	0.50	+1.1
2,395,989	-		PGA1_c23110	0.50	+0.4
2,395,989	-		PGA1_c23110	0.50	-1.6
2,395,989	-		PGA1_c23110	0.50	-1.4
2,396,060	-		PGA1_c23110	0.54	+1.6
2,396,107	-		PGA1_c23110	0.57	-0.7
2,396,135	+		PGA1_c23110	0.58	-1.8
2,396,159	+		PGA1_c23110	0.59	+1.6
2,396,159	+		PGA1_c23110	0.59	-0.5
2,396,174	+		PGA1_c23110	0.60	+1.4
2,396,177	-		PGA1_c23110	0.60	+2.1
2,396,182	-		PGA1_c23110	0.61	-0.6
2,396,182	-		PGA1_c23110	0.61	+1.8
2,396,182	-		PGA1_c23110	0.61	-0.6
2,396,289	+		PGA1_c23110	0.66	+0.7
2,396,294	+		PGA1_c23110	0.67	-3.1
2,396,297	-		PGA1_c23110	0.67	-3.2
2,396,342	+		PGA1_c23110	0.69	-0.6
2,396,350	-		PGA1_c23110	0.70	-0.6
2,396,361	+		PGA1_c23110	0.70	-3.3
2,396,367	-		PGA1_c23110	0.71	-2.4
2,396,382	-		PGA1_c23110	0.71	-1.5
2,396,408	+		PGA1_c23110	0.73	+0.4
2,396,415	+		PGA1_c23110	0.73	+0.5
2,396,415	+		PGA1_c23110	0.73	-0.6
2,396,416	-		PGA1_c23110	0.73	+0.7
2,396,416	-		PGA1_c23110	0.73	+1.0
2,396,423	-		PGA1_c23110	0.74	-0.0
2,396,423	-		PGA1_c23110	0.74	-0.9
2,396,423	-		PGA1_c23110	0.74	-3.8
2,396,460	-		PGA1_c23110	0.76	-1.7
2,396,500	+		PGA1_c23110	0.78	-0.5
2,396,571	-		PGA1_c23110	0.82	-0.2
2,396,610	+		PGA1_c23110	0.84	+2.3
2,396,662	+		PGA1_c23110	0.87	-1.7
2,396,672	-		PGA1_c23110	0.87	-4.2
2,396,707	+		PGA1_c23110	0.89	+1.1
2,396,728	+				-0.7
2,396,906	-				-0.2
2,396,918	+				-1.0
2,396,924	+				-1.0
2,396,949	-				+1.7
2,396,982	+				+2.4
2,396,987	+				-0.6
2,396,987	+				+1.1
2,396,987	+				-3.0
2,396,987	+				-2.8
2,396,987	+				+0.9
2,396,987	+				+0.7
2,396,987	+				-1.4
2,396,987	+				+1.6
2,396,987	+				+1.7
2,396,995	-				-2.4
2,396,995	-				+1.1
2,396,995	-				+0.4
2,396,995	-				-0.6
2,396,995	-				-0.3
2,397,014	+		PGA1_c23120	0.11	-0.5
2,397,021	+		PGA1_c23120	0.12	+0.5
2,397,035	-		PGA1_c23120	0.13	-1.5
2,397,059	+		PGA1_c23120	0.16	+0.4
2,397,079	+		PGA1_c23120	0.19	+0.3
2,397,130	-		PGA1_c23120	0.25	+0.7
2,397,140	+		PGA1_c23120	0.26	-1.7
2,397,167	+		PGA1_c23120	0.30	+2.1
2,397,167	+		PGA1_c23120	0.30	+0.6
2,397,175	-		PGA1_c23120	0.31	-0.8
2,397,175	-		PGA1_c23120	0.31	-0.5
2,397,197	-		PGA1_c23120	0.33	-0.7
2,397,197	-		PGA1_c23120	0.33	+0.5
2,397,197	-		PGA1_c23120	0.33	+2.2
2,397,199	+		PGA1_c23120	0.34	+2.1
2,397,199	+		PGA1_c23120	0.34	+0.2
2,397,207	-		PGA1_c23120	0.35	+0.7
2,397,207	-		PGA1_c23120	0.35	-1.4
2,397,207	-		PGA1_c23120	0.35	-1.4
2,397,207	-		PGA1_c23120	0.35	+1.8
2,397,212	-		PGA1_c23120	0.35	+0.1
2,397,217	-		PGA1_c23120	0.36	-1.4
2,397,255	+		PGA1_c23120	0.40	+0.1
2,397,308	-		PGA1_c23120	0.47	+1.0
2,397,372	+		PGA1_c23120	0.55	+0.8
2,397,412	+		PGA1_c23120	0.60	+1.9
2,397,435	+		PGA1_c23120	0.63	-3.5
2,397,435	+		PGA1_c23120	0.63	-1.4
2,397,435	+		PGA1_c23120	0.63	+0.4
2,397,435	+		PGA1_c23120	0.63	-2.7
2,397,443	-		PGA1_c23120	0.64	+0.1
2,397,443	-		PGA1_c23120	0.64	-0.5
2,397,443	-		PGA1_c23120	0.64	+0.2
2,397,467	-		PGA1_c23120	0.67	+1.3
2,397,508	-		PGA1_c23120	0.72	+2.2
2,397,512	+		PGA1_c23120	0.72	-0.3
2,397,515	-		PGA1_c23120	0.73	-0.0
2,397,569	-		PGA1_c23120	0.79	-1.0
2,397,578	+		PGA1_c23120	0.80	-0.0
2,397,578	+		PGA1_c23120	0.80	-0.1
2,397,578	+		PGA1_c23120	0.80	-1.9
2,397,578	+		PGA1_c23120	0.80	+0.3
2,397,586	-		PGA1_c23120	0.81	+0.4
2,397,586	-		PGA1_c23120	0.81	+0.9
2,397,641	-		PGA1_c23120	0.88	+1.3
2,397,671	+				+2.5
2,397,724	+				+0.2
2,397,729	+				-2.9
2,397,732	-				-0.7
2,397,784	-				-1.7
2,397,809	+				+1.5
2,397,817	-				-0.6
2,397,837	+				-3.7
2,397,846	-				+0.8
2,397,846	-				-3.1
2,397,846	-				-1.3
2,397,846	-				-0.4
2,397,864	+				-0.1
2,398,009	-		PGA1_c23130	0.16	-1.0
2,398,164	+		PGA1_c23130	0.28	-0.4
2,398,182	+		PGA1_c23130	0.29	-0.5
2,398,204	+		PGA1_c23130	0.31	+1.0
2,398,212	-		PGA1_c23130	0.31	-1.8
2,398,288	-		PGA1_c23130	0.37	+0.5
2,398,330	-		PGA1_c23130	0.40	+0.2
2,398,350	+		PGA1_c23130	0.42	+0.7
2,398,350	+		PGA1_c23130	0.42	-2.6
2,398,357	-		PGA1_c23130	0.42	+0.9
2,398,358	-		PGA1_c23130	0.43	+0.4
2,398,360	+		PGA1_c23130	0.43	+0.4
2,398,383	-		PGA1_c23130	0.44	-0.4
2,398,574	-		PGA1_c23130	0.59	+1.0
2,398,615	+		PGA1_c23130	0.62	+0.5
2,398,732	+		PGA1_c23130	0.71	+0.6
2,398,734	-		PGA1_c23130	0.71	+0.9