Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c23100

Experiment: m.b. nitrite 8 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. nitrite 8 mM
2,392,912	+				+1.1
2,392,912	-				+1.6
2,392,946	+				-4.0
2,392,946	+				+0.5
2,392,946	+				-3.1
2,392,946	+				-0.5
2,392,946	+				-3.6
2,392,951	+				+0.3
2,392,951	-				-1.4
2,392,954	-				+0.9
2,392,954	-				+0.7
2,392,954	-				+0.3
2,392,954	-				-0.4
2,392,959	-				+1.4
2,392,974	-				+2.7
2,392,984	-				+2.1
2,392,984	-				-1.2
2,392,998	+				-0.5
2,393,000	+				+0.0
2,393,006	-				-0.7
2,393,006	-				-1.4
2,393,009	-				-0.5
2,393,011	+				-0.8
2,393,019	-				-3.2
2,393,019	-				+0.5
2,393,022	+				-0.7
2,393,046	+				-0.9
2,393,046	+				+0.1
2,393,054	-				-2.3
2,393,056	+				+0.1
2,393,056	+				-0.9
2,393,056	+				-1.1
2,393,064	-				+0.9
2,393,064	-				+1.1
2,393,064	-				+0.4
2,393,064	-				+0.7
2,393,064	-				+0.6
2,393,088	-				+0.6
2,393,130	-		PGA1_c23090	0.15	-1.9
2,393,199	+		PGA1_c23090	0.23	+0.0
2,393,266	-		PGA1_c23090	0.32	-0.1
2,393,326	-		PGA1_c23090	0.40	+0.2
2,393,326	-		PGA1_c23090	0.40	-0.3
2,393,331	+		PGA1_c23090	0.40	+0.3
2,393,339	-		PGA1_c23090	0.41	-1.2
2,393,343	-		PGA1_c23090	0.42	+1.4
2,393,345	+		PGA1_c23090	0.42	+0.5
2,393,346	+		PGA1_c23090	0.42	-0.4
2,393,379	+		PGA1_c23090	0.46	+1.4
2,393,385	-		PGA1_c23090	0.47	+0.1
2,393,395	+		PGA1_c23090	0.48	-0.2
2,393,400	+		PGA1_c23090	0.49	-2.0
2,393,425	+		PGA1_c23090	0.52	-2.8
2,393,438	+		PGA1_c23090	0.54	-0.7
2,393,446	-		PGA1_c23090	0.55	+0.8
2,393,447	+		PGA1_c23090	0.55	+1.0
2,393,454	+		PGA1_c23090	0.56	+1.8
2,393,454	+		PGA1_c23090	0.56	+0.8
2,393,530	-		PGA1_c23090	0.65	+0.2
2,393,530	-		PGA1_c23090	0.65	-0.2
2,393,567	-		PGA1_c23090	0.70	+0.2
2,393,567	-		PGA1_c23090	0.70	+1.4
2,393,567	-		PGA1_c23090	0.70	+1.3
2,393,567	-		PGA1_c23090	0.70	-0.6
2,393,575	-		PGA1_c23090	0.71	-2.0
2,393,624	+		PGA1_c23090	0.77	+0.4
2,393,624	+		PGA1_c23090	0.77	-3.3
2,393,624	+		PGA1_c23090	0.77	-0.4
2,393,624	+		PGA1_c23090	0.77	+0.1
2,393,632	-		PGA1_c23090	0.78	-0.2
2,393,645	+		PGA1_c23090	0.80	+1.3
2,393,645	+		PGA1_c23090	0.80	-0.9
2,393,645	+		PGA1_c23090	0.80	-0.4
2,393,653	-		PGA1_c23090	0.81	+1.1
2,393,663	-		PGA1_c23090	0.82	-1.3
2,393,678	+		PGA1_c23090	0.84	+0.8
2,393,678	+		PGA1_c23090	0.84	-1.4
2,393,769	+				+1.8
2,393,784	-				-1.3
2,393,801	-				-1.4
2,393,815	-				-0.6
2,393,815	-				+0.4
2,393,815	-				+0.4
2,393,849	+				+0.1
2,393,851	+				+0.8
2,393,870	+				+1.2
2,393,920	+				-2.8
2,393,920	+				+1.8
2,393,920	+				+2.1
2,393,920	+				+0.1
2,393,925	-				-0.4
2,393,928	-				+0.1
2,393,977	+				-1.2
2,393,977	+				+0.8
2,393,985	-				+0.6
2,393,985	-				+1.1
2,393,985	-				-0.1
2,393,985	-				-2.7
2,393,985	-				-1.0
2,393,985	-				-1.6
2,394,008	-		PGA1_c23100	0.12	-0.3
2,394,010	+		PGA1_c23100	0.12	+0.9
2,394,049	+		PGA1_c23100	0.16	-0.2
2,394,057	-		PGA1_c23100	0.17	-2.3
2,394,059	-		PGA1_c23100	0.17	-2.3
2,394,059	-		PGA1_c23100	0.17	-1.6
2,394,116	-		PGA1_c23100	0.23	+0.4
2,394,137	-		PGA1_c23100	0.26	+1.0
2,394,179	-		PGA1_c23100	0.30	-1.4
2,394,183	-		PGA1_c23100	0.30	-1.4
2,394,214	+		PGA1_c23100	0.34	-0.1
2,394,217	+		PGA1_c23100	0.34	+0.4
2,394,280	-		PGA1_c23100	0.41	+2.9
2,394,337	+		PGA1_c23100	0.46	+0.3
2,394,344	-		PGA1_c23100	0.47	-0.8
2,394,437	+		PGA1_c23100	0.57	-2.1
2,394,445	-		PGA1_c23100	0.58	+0.0
2,394,445	-		PGA1_c23100	0.58	-3.4
2,394,445	-		PGA1_c23100	0.58	-1.4
2,394,445	-		PGA1_c23100	0.58	+0.3
2,394,445	-		PGA1_c23100	0.58	-0.1
2,394,445	-		PGA1_c23100	0.58	+2.0
2,394,445	-		PGA1_c23100	0.58	-0.7
2,394,462	-		PGA1_c23100	0.60	-2.0
2,394,462	-		PGA1_c23100	0.60	-0.9
2,394,462	-		PGA1_c23100	0.60	-2.5
2,394,552	+		PGA1_c23100	0.69	-0.4
2,394,552	+		PGA1_c23100	0.69	+1.3
2,394,552	+		PGA1_c23100	0.69	-0.6
2,394,560	-		PGA1_c23100	0.70	-1.1
2,394,667	+		PGA1_c23100	0.81	-1.6
2,394,692	-		PGA1_c23100	0.84	-0.9
2,394,699	+		PGA1_c23100	0.84	-0.2
2,394,750	-		PGA1_c23100	0.90	+1.9
2,394,750	-		PGA1_c23100	0.90	+1.2
2,394,752	+		PGA1_c23100	0.90	-0.0
2,394,752	+		PGA1_c23100	0.90	+0.2
2,394,783	+				+1.4
2,394,878	+				+0.7
2,394,892	+				+0.2
2,394,916	-				+1.4
2,394,920	+				-1.0
2,394,925	+				-0.1
2,394,926	+				-0.3
2,394,926	+				-0.8
2,394,928	-				+1.3
2,394,931	+				-3.1
2,394,933	-				+1.2
2,394,936	+				-0.5
2,395,053	+				+0.4
2,395,053	+				+0.2
2,395,061	-				+0.5
2,395,113	+				-2.6
2,395,115	+				-2.0
2,395,115	+				+1.3
2,395,119	+				+2.0
2,395,123	-				-2.6
2,395,162	-				+0.3
2,395,163	+				-1.7
2,395,163	+				-0.4
2,395,168	+				+1.2
2,395,171	-				+1.0
2,395,173	+				+0.8
2,395,174	+				+0.2
2,395,176	-				-1.6
2,395,176	-				+0.4
2,395,182	-				+1.4
2,395,182	-				+1.2
2,395,189	+				-0.6
2,395,196	-				+0.9
2,395,197	-				+0.6
2,395,197	-				-1.0
2,395,197	-				-0.3
2,395,198	+				-2.4
2,395,220	+				+0.9
2,395,236	+				+0.1
2,395,265	-		PGA1_c23110	0.11	+1.0
2,395,290	+		PGA1_c23110	0.12	-1.2
2,395,290	+		PGA1_c23110	0.12	-1.2
2,395,290	+		PGA1_c23110	0.12	-2.4
2,395,339	-		PGA1_c23110	0.15	-2.8
2,395,339	-		PGA1_c23110	0.15	-0.4
2,395,382	+		PGA1_c23110	0.17	-0.3
2,395,390	-		PGA1_c23110	0.18	+0.7
2,395,390	-		PGA1_c23110	0.18	+1.2
2,395,411	+		PGA1_c23110	0.19	-0.8
2,395,430	-		PGA1_c23110	0.20	+2.3
2,395,430	-		PGA1_c23110	0.20	-2.4
2,395,445	-		PGA1_c23110	0.21	+0.2
2,395,493	+		PGA1_c23110	0.23	+1.0
2,395,501	-		PGA1_c23110	0.24	+1.4
2,395,501	-		PGA1_c23110	0.24	+1.0
2,395,501	-		PGA1_c23110	0.24	-0.9
2,395,501	-		PGA1_c23110	0.24	-0.6
2,395,516	+		PGA1_c23110	0.24	+1.4
2,395,521	-		PGA1_c23110	0.25	-1.0
2,395,561	+		PGA1_c23110	0.27	-0.0
2,395,598	+		PGA1_c23110	0.29	-2.6
2,395,612	-		PGA1_c23110	0.30	-0.3
2,395,642	-		PGA1_c23110	0.31	-0.6
2,395,647	-		PGA1_c23110	0.32	+1.3
2,395,654	+		PGA1_c23110	0.32	+1.1
2,395,679	+		PGA1_c23110	0.33	-0.1
2,395,684	+		PGA1_c23110	0.34	+0.4
2,395,684	+		PGA1_c23110	0.34	-0.3
2,395,692	-		PGA1_c23110	0.34	-1.3
2,395,692	-		PGA1_c23110	0.34	+2.3
2,395,694	+		PGA1_c23110	0.34	-1.7
2,395,694	+		PGA1_c23110	0.34	-1.4
2,395,704	-		PGA1_c23110	0.35	-2.4
2,395,739	-		PGA1_c23110	0.37	-0.4
2,395,749	-		PGA1_c23110	0.37	+1.3
2,395,794	-		PGA1_c23110	0.40	-0.5