Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c22710

Experiment: m.b. nitrite 8 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. nitrite 8 mM
2,351,951	+		PGA1_c22700	0.80	+2.4
2,351,986	+		PGA1_c22700	0.86	-2.4
2,352,010	+		PGA1_c22700	0.90	+0.1
2,352,018	+				-0.2
2,352,018	+				+0.4
2,352,018	+				-0.1
2,352,018	+				-0.8
2,352,026	-				+0.3
2,352,026	-				-0.0
2,352,030	+				-0.9
2,352,048	+				-0.7
2,352,056	-				-1.8
2,352,063	+				+0.7
2,352,131	-				+0.1
2,352,131	-				-0.2
2,352,136	+				-0.8
2,352,136	+				-0.2
2,352,137	-				-1.2
2,352,137	-				-1.0
2,352,138	-				-3.4
2,352,144	+				-2.4
2,352,144	+				-0.2
2,352,144	+				-1.0
2,352,144	-				-0.7
2,352,144	-				-2.9
2,352,144	-				+1.3
2,352,144	-				-0.2
2,352,144	-				+1.1
2,352,144	-				-1.7
2,352,150	-				-3.2
2,352,152	-				+0.3
2,352,152	-				+1.3
2,352,152	-				+0.8
2,352,153	+				+0.8
2,352,153	+				-0.7
2,352,153	+				+0.9
2,352,160	+				+0.2
2,352,160	+				-0.3
2,352,161	-				-1.0
2,352,161	-				-1.2
2,352,161	-				+0.2
2,352,161	-				+0.9
2,352,210	+				+0.3
2,352,210	+				+0.4
2,352,210	+				-2.3
2,352,289	+				+0.5
2,352,289	+				-3.4
2,352,289	+				-0.7
2,352,297	-				-3.6
2,352,297	-				-0.5
2,352,297	-				+0.6
2,352,297	-				-1.2
2,352,297	-				-2.9
2,352,297	-				-0.3
2,352,297	-				+2.4
2,352,318	-				-0.3
2,352,323	+				-1.8
2,352,325	-				-3.5
2,352,348	+				-1.9
2,352,356	-				-0.5
2,352,356	-				-1.1
2,352,388	-				+0.4
2,352,392	+				-0.8
2,352,397	+				+0.8
2,352,401	-				+1.0
2,352,403	+				+0.4
2,352,403	+				+1.7
2,352,416	+				+1.3
2,352,424	+				+2.2
2,352,445	-				-2.2
2,352,450	-				-0.0
2,352,467	-				+1.4
2,352,497	+				+1.5
2,352,514	-				-1.3
2,352,514	-				-0.6
2,352,514	-				-0.9
2,352,553	-				-0.7
2,352,575	-				-2.3
2,352,577	+				-1.5
2,352,604	+				+0.9
2,352,604	+				+0.1
2,352,604	+				-0.3
2,352,604	+				-2.9
2,352,604	+				+1.2
2,352,604	+				-0.2
2,352,604	+				+1.4
2,352,612	-				-1.2
2,352,621	+				+0.3
2,352,621	+				+0.4
2,352,622	+				+2.1
2,352,622	-				-2.9
2,352,629	-				-2.2
2,352,629	-				-1.8
2,352,629	-				-1.6
2,352,637	-				-0.2
2,352,639	+				+0.6
2,352,642	-				-0.6
2,352,651	+				+0.3
2,352,657	+				-0.2
2,352,659	-				-0.1
2,352,666	+				-0.4
2,352,711	-				-0.8
2,352,736	+				-1.6
2,352,775	+				-1.9
2,352,791	+				+1.5
2,352,810	+				+0.4
2,352,835	+				+0.4
2,352,835	+				-2.3
2,352,843	-				-0.6
2,352,845	+				+1.0
2,352,850	-				-2.2
2,352,873	-				+0.2
2,352,922	+				+0.2
2,352,930	+				+1.5
2,352,930	-				+0.9
2,352,932	+				+1.2
2,352,937	-				-0.3
2,352,938	+				+0.5
2,352,938	+				-0.5
2,352,938	-				-1.2
2,352,940	+				-1.0
2,352,946	-				+0.5
2,352,956	-				-1.4
2,352,956	-				-0.7
2,352,988	-				+0.4
2,353,003	-				-3.5
2,353,020	+				-1.2
2,353,023	-				+1.0
2,353,023	-				+0.6
2,353,075	+		PGA1_c22710	0.11	-0.7
2,353,088	-		PGA1_c22710	0.12	+0.6
2,353,094	+		PGA1_c22710	0.12	+0.7
2,353,102	-		PGA1_c22710	0.13	-0.3
2,353,107	+		PGA1_c22710	0.13	+0.4
2,353,109	-		PGA1_c22710	0.13	+0.3
2,353,109	-		PGA1_c22710	0.13	+0.8
2,353,109	-		PGA1_c22710	0.13	-2.2
2,353,115	-		PGA1_c22710	0.14	+0.2
2,353,117	+		PGA1_c22710	0.14	-2.5
2,353,125	-		PGA1_c22710	0.15	-2.6
2,353,125	-		PGA1_c22710	0.15	-1.0
2,353,173	+		PGA1_c22710	0.19	-0.7
2,353,208	+		PGA1_c22710	0.22	+0.4
2,353,220	+		PGA1_c22710	0.23	-0.0
2,353,252	+		PGA1_c22710	0.26	-2.4
2,353,261	+		PGA1_c22710	0.26	-2.9
2,353,309	+		PGA1_c22710	0.30	-1.8
2,353,347	+		PGA1_c22710	0.34	-0.6
2,353,347	+		PGA1_c22710	0.34	-0.1
2,353,352	+		PGA1_c22710	0.34	+2.9
2,353,352	+		PGA1_c22710	0.34	-2.8
2,353,355	-		PGA1_c22710	0.34	-1.6
2,353,360	-		PGA1_c22710	0.35	+0.8
2,353,364	+		PGA1_c22710	0.35	+0.9
2,353,386	-		PGA1_c22710	0.37	-0.6
2,353,451	-		PGA1_c22710	0.42	-1.6
2,353,484	+		PGA1_c22710	0.45	-2.1
2,353,515	-		PGA1_c22710	0.48	-0.7
2,353,515	-		PGA1_c22710	0.48	+1.2
2,353,541	+		PGA1_c22710	0.50	+0.7
2,353,547	+		PGA1_c22710	0.51	-1.9
2,353,549	-		PGA1_c22710	0.51	+1.3
2,353,567	-		PGA1_c22710	0.52	+0.5
2,353,567	-		PGA1_c22710	0.52	+0.1
2,353,567	-		PGA1_c22710	0.52	-1.4
2,353,670	+		PGA1_c22710	0.61	-1.2
2,353,670	+		PGA1_c22710	0.61	-1.3
2,353,693	+		PGA1_c22710	0.63	-0.2
2,353,771	+		PGA1_c22710	0.70	+0.5
2,353,771	+		PGA1_c22710	0.70	-0.8
2,353,784	-		PGA1_c22710	0.71	+0.6
2,353,799	+		PGA1_c22710	0.72	+0.5
2,353,839	-		PGA1_c22710	0.75	-1.9
2,353,860	+		PGA1_c22710	0.77	-0.2
2,353,860	-		PGA1_c22710	0.77	-0.3
2,353,889	+		PGA1_c22710	0.80	+0.8
2,353,928	-		PGA1_c22710	0.83	-3.1
2,353,954	-		PGA1_c22710	0.85	-0.8
2,353,959	-		PGA1_c22710	0.86	-1.9
2,353,996	-		PGA1_c22710	0.89	-1.0
2,354,036	-				+0.6
2,354,097	+				+0.5
2,354,097	+				-0.6
2,354,097	+				-2.3
2,354,102	+				-0.6
2,354,124	+				-3.1
2,354,143	-				+0.4
2,354,172	+				+0.7
2,354,256	+				-1.6
2,354,354	-				+2.3
2,354,368	+				-0.7
2,354,481	+		PGA1_c22720	0.15	-0.6
2,354,504	-		PGA1_c22720	0.18	+0.7
2,354,533	-		PGA1_c22720	0.21	-1.4
2,354,554	-		PGA1_c22720	0.23	-0.2
2,354,567	+		PGA1_c22720	0.24	+0.5
2,354,579	-		PGA1_c22720	0.25	+1.8
2,354,585	-		PGA1_c22720	0.26	-3.8
2,354,648	-		PGA1_c22720	0.32	-1.8
2,354,699	+		PGA1_c22720	0.37	+0.6
2,354,702	-		PGA1_c22720	0.37	-1.6
2,354,710	+		PGA1_c22720	0.38	-2.7
2,354,718	-		PGA1_c22720	0.39	-2.8
2,354,718	-		PGA1_c22720	0.39	+0.1
2,354,718	-		PGA1_c22720	0.39	-2.5
2,354,720	+		PGA1_c22720	0.39	-1.7
2,354,730	-		PGA1_c22720	0.40	-2.6
2,354,744	-		PGA1_c22720	0.41	+1.8
2,354,761	-		PGA1_c22720	0.43	+1.3
2,354,803	-		PGA1_c22720	0.47	-2.9
2,354,811	+		PGA1_c22720	0.48	+0.1
2,354,840	+		PGA1_c22720	0.51	-2.3
2,354,840	+		PGA1_c22720	0.51	+0.8
2,354,853	+		PGA1_c22720	0.52	+1.2
2,354,853	+		PGA1_c22720	0.52	-0.0
2,354,853	+		PGA1_c22720	0.52	+0.1
2,354,853	+		PGA1_c22720	0.52	-1.8
2,354,861	-		PGA1_c22720	0.53	+1.2
2,354,862	+		PGA1_c22720	0.53	-0.9
2,354,870	-		PGA1_c22720	0.54	+0.2
2,354,873	+		PGA1_c22720	0.54	-4.3
2,354,918	-		PGA1_c22720	0.58	-2.0
2,354,925	-		PGA1_c22720	0.59	-0.3
2,354,943	+		PGA1_c22720	0.61	-2.1
2,354,943	+		PGA1_c22720	0.61	+0.7
2,354,943	+		PGA1_c22720	0.61	-1.2
2,354,955	+		PGA1_c22720	0.62	+0.7
2,354,955	+		PGA1_c22720	0.62	+1.7
2,354,955	+		PGA1_c22720	0.62	-0.3
2,354,995	-		PGA1_c22720	0.66	+1.5
2,355,079	+		PGA1_c22720	0.74	-0.9
2,355,087	-		PGA1_c22720	0.75	-2.8
2,355,087	-		PGA1_c22720	0.75	-2.9
2,355,087	-		PGA1_c22720	0.75	-1.6
2,355,112	-		PGA1_c22720	0.77	+0.0
2,355,112	-		PGA1_c22720	0.77	-0.1