Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c22330

Experiment: m.b. nitrite 8 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. nitrite 8 mM
2,315,409	+				+1.3
2,315,416	-				+0.3
2,315,416	-				+0.0
2,315,461	+				-0.4
2,315,495	+				-0.4
2,315,507	+				-1.2
2,315,527	+				+0.2
2,315,527	+				-0.5
2,315,640	+		PGA1_c22320	0.22	-0.8
2,315,653	-		PGA1_c22320	0.23	-0.1
2,315,653	-		PGA1_c22320	0.23	-0.2
2,315,655	+		PGA1_c22320	0.23	-2.4
2,315,740	+		PGA1_c22320	0.33	-1.3
2,315,792	+		PGA1_c22320	0.39	-1.0
2,315,792	+		PGA1_c22320	0.39	+0.0
2,315,800	-		PGA1_c22320	0.40	-1.8
2,315,800	-		PGA1_c22320	0.40	+1.7
2,315,800	-		PGA1_c22320	0.40	-1.7
2,315,800	-		PGA1_c22320	0.40	-1.9
2,315,867	+		PGA1_c22320	0.47	+1.7
2,315,963	+		PGA1_c22320	0.58	+0.5
2,315,997	+		PGA1_c22320	0.62	+1.5
2,315,997	+		PGA1_c22320	0.62	+0.8
2,315,997	+		PGA1_c22320	0.62	+1.2
2,315,997	+		PGA1_c22320	0.62	+1.5
2,316,039	+		PGA1_c22320	0.67	+1.1
2,316,039	+		PGA1_c22320	0.67	+1.0
2,316,039	-		PGA1_c22320	0.67	-2.4
2,316,046	+		PGA1_c22320	0.67	-0.2
2,316,046	+		PGA1_c22320	0.67	+1.4
2,316,047	-		PGA1_c22320	0.68	-0.9
2,316,049	-		PGA1_c22320	0.68	-0.5
2,316,127	-		PGA1_c22320	0.77	-1.4
2,316,127	-		PGA1_c22320	0.77	-2.0
2,316,211	-		PGA1_c22320	0.86	+1.9
2,316,266	+				-3.1
2,316,421	-				+0.4
2,316,447	+				-0.9
2,316,527	-				-2.0
2,316,546	+				+1.6
2,316,548	-				-2.9
2,316,573	-				-0.7
2,316,677	+				+1.2
2,316,681	-				+0.2
2,316,685	-				+1.1
2,316,695	-				-0.0
2,316,715	+				+3.3
2,316,723	-				-0.0
2,316,728	+				-0.9
2,316,736	-				-0.8
2,316,778	-				-1.4
2,316,801	-		PGA1_c22330	0.10	+0.3
2,316,846	-		PGA1_c22330	0.11	-2.0
2,316,850	+		PGA1_c22330	0.11	-0.9
2,316,858	-		PGA1_c22330	0.12	+1.2
2,317,052	-		PGA1_c22330	0.16	+0.4
2,317,097	-		PGA1_c22330	0.17	+0.4
2,317,122	-		PGA1_c22330	0.17	-1.1
2,317,132	+		PGA1_c22330	0.18	-2.6
2,317,140	+		PGA1_c22330	0.18	-0.0
2,317,151	+		PGA1_c22330	0.18	-0.2
2,317,176	+		PGA1_c22330	0.19	+0.3
2,317,199	-		PGA1_c22330	0.19	+0.4
2,317,212	+		PGA1_c22330	0.19	+1.1
2,317,249	+		PGA1_c22330	0.20	+0.8
2,317,310	+		PGA1_c22330	0.21	+2.0
2,317,310	+		PGA1_c22330	0.21	-1.9
2,317,338	+		PGA1_c22330	0.22	-0.5
2,317,380	+		PGA1_c22330	0.23	+1.4
2,317,429	+		PGA1_c22330	0.24	-3.2
2,317,448	+		PGA1_c22330	0.24	-2.6
2,317,462	+		PGA1_c22330	0.25	-2.6
2,317,498	+		PGA1_c22330	0.26	+2.1
2,317,506	-		PGA1_c22330	0.26	+1.1
2,317,506	-		PGA1_c22330	0.26	+0.5
2,317,523	-		PGA1_c22330	0.26	+1.0
2,317,523	-		PGA1_c22330	0.26	+0.3
2,317,529	+		PGA1_c22330	0.26	+0.9
2,317,537	-		PGA1_c22330	0.26	-2.2
2,317,537	-		PGA1_c22330	0.26	-0.3
2,317,560	+		PGA1_c22330	0.27	-1.9
2,317,617	+		PGA1_c22330	0.28	-1.0
2,317,642	+		PGA1_c22330	0.29	+0.1
2,317,775	-		PGA1_c22330	0.32	-0.4
2,317,795	+		PGA1_c22330	0.32	-0.5
2,317,795	+		PGA1_c22330	0.32	-1.2
2,317,795	+		PGA1_c22330	0.32	-0.6
2,317,795	+		PGA1_c22330	0.32	-1.4
2,317,803	-		PGA1_c22330	0.32	+0.2
2,317,803	-		PGA1_c22330	0.32	+0.6
2,317,803	-		PGA1_c22330	0.32	-1.2
2,317,803	-		PGA1_c22330	0.32	+0.9
2,317,803	-		PGA1_c22330	0.32	-2.5
2,317,805	+		PGA1_c22330	0.32	-0.8
2,317,805	+		PGA1_c22330	0.32	-3.0
2,317,811	-		PGA1_c22330	0.32	-3.5
2,317,813	-		PGA1_c22330	0.32	-1.8
2,317,813	-		PGA1_c22330	0.32	+0.3
2,317,813	-		PGA1_c22330	0.32	-0.5
2,317,822	+		PGA1_c22330	0.33	+1.8
2,317,827	+		PGA1_c22330	0.33	-1.6
2,317,832	+		PGA1_c22330	0.33	-0.3
2,317,853	+		PGA1_c22330	0.33	-0.0
2,317,853	+		PGA1_c22330	0.33	-0.8
2,317,853	+		PGA1_c22330	0.33	-1.9
2,317,853	+		PGA1_c22330	0.33	-0.9
2,317,853	+		PGA1_c22330	0.33	-0.1
2,317,853	+		PGA1_c22330	0.33	-0.9
2,317,853	+		PGA1_c22330	0.33	+1.9
2,317,861	-		PGA1_c22330	0.34	+1.2
2,317,861	-		PGA1_c22330	0.34	-0.1
2,317,861	-		PGA1_c22330	0.34	+2.3
2,317,889	+		PGA1_c22330	0.34	-1.5
2,317,897	-		PGA1_c22330	0.34	+1.0
2,317,951	+		PGA1_c22330	0.35	+0.2
2,317,959	-		PGA1_c22330	0.36	-1.1
2,317,978	+		PGA1_c22330	0.36	+0.3
2,317,999	-		PGA1_c22330	0.37	-1.0
2,318,004	-		PGA1_c22330	0.37	+1.0
2,318,005	+		PGA1_c22330	0.37	+0.9
2,318,015	+		PGA1_c22330	0.37	-2.4
2,318,056	-		PGA1_c22330	0.38	-0.7
2,318,056	-		PGA1_c22330	0.38	+0.9
2,318,056	-		PGA1_c22330	0.38	-0.5
2,318,056	-		PGA1_c22330	0.38	-0.7
2,318,091	+		PGA1_c22330	0.39	-2.5
2,318,099	-		PGA1_c22330	0.39	-0.8
2,318,099	-		PGA1_c22330	0.39	+0.6
2,318,130	-		PGA1_c22330	0.39	-2.3
2,318,226	-		PGA1_c22330	0.41	-2.5
2,318,228	+		PGA1_c22330	0.42	-0.1
2,318,236	-		PGA1_c22330	0.42	+1.5
2,318,276	+		PGA1_c22330	0.43	-0.3
2,318,276	+		PGA1_c22330	0.43	+1.7
2,318,276	+		PGA1_c22330	0.43	-1.2
2,318,284	-		PGA1_c22330	0.43	+1.3
2,318,284	-		PGA1_c22330	0.43	+0.8
2,318,293	-		PGA1_c22330	0.43	+3.6
2,318,293	-		PGA1_c22330	0.43	-0.6
2,318,338	+		PGA1_c22330	0.44	-0.1
2,318,346	-		PGA1_c22330	0.44	-0.8
2,318,346	-		PGA1_c22330	0.44	+0.3
2,318,348	+		PGA1_c22330	0.44	-0.4
2,318,372	+		PGA1_c22330	0.45	-0.4
2,318,425	+		PGA1_c22330	0.46	-0.1
2,318,440	+		PGA1_c22330	0.46	-3.6
2,318,448	-		PGA1_c22330	0.46	-3.0
2,318,480	+		PGA1_c22330	0.47	-0.2
2,318,488	-		PGA1_c22330	0.47	+1.2
2,318,488	-		PGA1_c22330	0.47	-3.5
2,318,488	-		PGA1_c22330	0.47	-2.3
2,318,490	+		PGA1_c22330	0.47	-0.9
2,318,516	-		PGA1_c22330	0.48	-0.6
2,318,587	-		PGA1_c22330	0.49	-3.1
2,318,598	+		PGA1_c22330	0.50	-0.3
2,318,672	-		PGA1_c22330	0.51	-1.1
2,318,674	+		PGA1_c22330	0.51	-0.6
2,318,682	-		PGA1_c22330	0.51	-0.2
2,318,682	-		PGA1_c22330	0.51	+1.1
2,318,706	-		PGA1_c22330	0.52	-0.5
2,318,731	+		PGA1_c22330	0.53	-0.8
2,318,748	-		PGA1_c22330	0.53	-0.9
2,318,748	-		PGA1_c22330	0.53	+0.1
2,318,748	-		PGA1_c22330	0.53	-2.4
2,318,750	+		PGA1_c22330	0.53	-1.9
2,318,756	+		PGA1_c22330	0.53	+0.5
2,318,756	+		PGA1_c22330	0.53	-2.6
2,318,758	-		PGA1_c22330	0.53	+0.8
2,318,821	+		PGA1_c22330	0.55	-0.1
2,318,827	+		PGA1_c22330	0.55	-1.3
2,318,827	+		PGA1_c22330	0.55	-1.5
2,318,827	+		PGA1_c22330	0.55	-2.5
2,318,827	+		PGA1_c22330	0.55	-0.5
2,318,827	+		PGA1_c22330	0.55	+2.0
2,318,827	+		PGA1_c22330	0.55	-0.8
2,318,835	-		PGA1_c22330	0.55	-2.2
2,318,835	-		PGA1_c22330	0.55	-1.1
2,318,835	-		PGA1_c22330	0.55	+1.4
2,318,835	-		PGA1_c22330	0.55	-1.4
2,318,835	-		PGA1_c22330	0.55	-0.1
2,318,835	-		PGA1_c22330	0.55	+0.1
2,318,835	-		PGA1_c22330	0.55	+1.1
2,318,845	+		PGA1_c22330	0.55	-0.7
2,318,857	+		PGA1_c22330	0.55	-0.8
2,318,857	+		PGA1_c22330	0.55	+3.0
2,318,893	-		PGA1_c22330	0.56	+0.3
2,318,900	+		PGA1_c22330	0.56	+1.2
2,318,906	+		PGA1_c22330	0.56	-0.5
2,318,906	+		PGA1_c22330	0.56	+0.6
2,318,910	-		PGA1_c22330	0.56	-0.1
2,318,912	+		PGA1_c22330	0.57	+2.1
2,318,957	+		PGA1_c22330	0.57	-1.4
2,318,979	+		PGA1_c22330	0.58	-3.1
2,319,010	+		PGA1_c22330	0.59	-2.9
2,319,020	+		PGA1_c22330	0.59	-3.1
2,319,035	+		PGA1_c22330	0.59	+0.9
2,319,041	+		PGA1_c22330	0.59	+0.0
2,319,043	-		PGA1_c22330	0.59	+1.7
2,319,048	+		PGA1_c22330	0.59	+1.1
2,319,049	-		PGA1_c22330	0.60	-0.1
2,319,052	+		PGA1_c22330	0.60	+1.7
2,319,054	+		PGA1_c22330	0.60	-0.1
2,319,056	-		PGA1_c22330	0.60	+0.0
2,319,056	-		PGA1_c22330	0.60	+1.1
2,319,129	+		PGA1_c22330	0.61	+0.1
2,319,129	+		PGA1_c22330	0.61	+0.7
2,319,129	+		PGA1_c22330	0.61	-0.9
2,319,129	+		PGA1_c22330	0.61	+0.5
2,319,137	-		PGA1_c22330	0.61	-2.6
2,319,185	-		PGA1_c22330	0.62	+1.8
2,319,220	-		PGA1_c22330	0.63	+0.4
2,319,225	+		PGA1_c22330	0.63	-0.6
2,319,233	-		PGA1_c22330	0.64	+0.2
2,319,275	+		PGA1_c22330	0.64	-2.2
2,319,281	-		PGA1_c22330	0.65	-0.6
2,319,283	-		PGA1_c22330	0.65	+0.0
2,319,283	-		PGA1_c22330	0.65	+0.4
2,319,283	-		PGA1_c22330	0.65	+1.0
2,319,317	-		PGA1_c22330	0.65	-0.8
2,319,329	+		PGA1_c22330	0.66	+0.3
2,319,329	+		PGA1_c22330	0.66	-1.4
2,319,337	-		PGA1_c22330	0.66	-0.3
2,319,337	-		PGA1_c22330	0.66	-1.8
2,319,337	-		PGA1_c22330	0.66	-2.1
2,319,365	+		PGA1_c22330	0.66	+0.2
2,319,373	-		PGA1_c22330	0.67	-0.6
2,319,392	-		PGA1_c22330	0.67	+0.2
2,319,427	+		PGA1_c22330	0.68	-0.7
2,319,464	-		PGA1_c22330	0.69	-0.3
2,319,466	+		PGA1_c22330	0.69	-3.1
2,319,479	+		PGA1_c22330	0.69	-0.1
2,319,479	+		PGA1_c22330	0.69	-2.8
2,319,479	+		PGA1_c22330	0.69	-1.2
2,319,479	+		PGA1_c22330	0.69	-1.6
2,319,479	+		PGA1_c22330	0.69	-0.2
2,319,487	-		PGA1_c22330	0.69	+0.7
2,319,487	-		PGA1_c22330	0.69	-1.9
2,319,487	-		PGA1_c22330	0.69	+1.8
2,319,526	+		PGA1_c22330	0.70	+1.0
2,319,526	+		PGA1_c22330	0.70	-1.0
2,319,526	+		PGA1_c22330	0.70	+1.7
2,319,534	-		PGA1_c22330	0.70	-2.4
2,319,534	-		PGA1_c22330	0.70	-0.2
2,319,534	-		PGA1_c22330	0.70	-0.3
2,319,534	-		PGA1_c22330	0.70	-1.5
2,319,543	+		PGA1_c22330	0.70	-1.5
2,319,581	-		PGA1_c22330	0.71	-1.4
2,319,609	+		PGA1_c22330	0.72	-0.6
2,319,610	+		PGA1_c22330	0.72	+0.9
2,319,618	-		PGA1_c22330	0.72	-0.1
2,319,620	+		PGA1_c22330	0.72	+0.8
2,319,620	+		PGA1_c22330	0.72	-1.6
2,319,620	+		PGA1_c22330	0.72	-1.3
2,319,620	+		PGA1_c22330	0.72	-0.3
2,319,620	+		PGA1_c22330	0.72	+0.6
2,319,620	+		PGA1_c22330	0.72	-0.4
2,319,625	-		PGA1_c22330	0.72	-1.2
2,319,628	-		PGA1_c22330	0.72	+0.4
2,319,628	-		PGA1_c22330	0.72	-1.4
2,319,628	-		PGA1_c22330	0.72	+2.7
2,319,628	-		PGA1_c22330	0.72	-0.1
2,319,628	-		PGA1_c22330	0.72	-0.7
2,319,628	-		PGA1_c22330	0.72	-0.2
2,319,632	+		PGA1_c22330	0.72	-1.1
2,319,642	-		PGA1_c22330	0.72	-0.5
2,319,648	-		PGA1_c22330	0.73	+1.6
2,319,650	+		PGA1_c22330	0.73	-2.1
2,319,656	-		PGA1_c22330	0.73	+0.2
2,319,658	-		PGA1_c22330	0.73	+0.6
2,319,700	+		PGA1_c22330	0.74	+0.6
2,319,700	+		PGA1_c22330	0.74	-0.7
2,319,700	+		PGA1_c22330	0.74	+0.4
2,319,700	+		PGA1_c22330	0.74	-0.7
2,319,708	-		PGA1_c22330	0.74	-1.1
2,319,708	-		PGA1_c22330	0.74	+1.9
2,319,719	+		PGA1_c22330	0.74	-1.3
2,319,727	-		PGA1_c22330	0.74	+0.8
2,319,733	+		PGA1_c22330	0.74	-2.2
2,319,733	+		PGA1_c22330	0.74	+0.7
2,319,749	-		PGA1_c22330	0.75	-1.6
2,319,846	-		PGA1_c22330	0.77	-0.0
2,319,846	-		PGA1_c22330	0.77	-2.5
2,319,846	-		PGA1_c22330	0.77	-0.6
2,319,846	-		PGA1_c22330	0.77	-0.7
2,319,846	-		PGA1_c22330	0.77	-1.3
2,319,846	-		PGA1_c22330	0.77	+0.0
2,319,846	-		PGA1_c22330	0.77	+0.4
2,319,883	-		PGA1_c22330	0.78	+0.4
2,319,929	-		PGA1_c22330	0.79	+0.1
2,319,934	-		PGA1_c22330	0.79	+1.9
2,319,934	-		PGA1_c22330	0.79	-2.8
2,319,946	-		PGA1_c22330	0.79	-1.2
2,320,001	+		PGA1_c22330	0.80	+0.0
2,320,022	+		PGA1_c22330	0.81	-0.9
2,320,048	-		PGA1_c22330	0.81	-3.2
2,320,121	-		PGA1_c22330	0.83	+1.4
2,320,175	-		PGA1_c22330	0.84	-0.9
2,320,175	-		PGA1_c22330	0.84	-1.1
2,320,184	-		PGA1_c22330	0.84	-0.6
2,320,200	+		PGA1_c22330	0.85	-3.5
2,320,200	+		PGA1_c22330	0.85	-2.1
2,320,339	+		PGA1_c22330	0.88	-1.4
2,320,342	-		PGA1_c22330	0.88	-0.1
2,320,342	-		PGA1_c22330	0.88	+1.3
2,320,342	-		PGA1_c22330	0.88	-0.2
2,320,347	-		PGA1_c22330	0.88	-0.1
2,320,357	+		PGA1_c22330	0.88	-2.2
2,320,370	-		PGA1_c22330	0.88	+0.9
2,320,370	-		PGA1_c22330	0.88	-1.7
2,320,439	-		PGA1_c22330	0.90	-0.1
2,320,472	+				+0.9
2,320,482	+				-0.0
2,320,482	+				+0.1
2,320,482	+				-1.3
2,320,490	-				+0.2
2,320,490	-				-1.4
2,320,491	+				+0.1
2,320,498	+				+0.7
2,320,499	-				-1.0
2,320,513	+				-1.4
2,320,542	-				-1.2
2,320,542	-				+0.8
2,320,552	-				-2.1
2,320,563	-				+1.4
2,320,572	-				-0.6
2,320,668	+				-0.8
2,320,710	-				-0.9
2,320,710	-				-0.2
2,320,710	-				-0.4
2,320,800	+				-3.1
2,320,828	+				-0.5
2,320,847	+				+0.7
2,320,847	+				+2.8
2,320,847	+				+1.4
2,320,847	+				-1.6
2,320,855	-				+0.6
2,320,859	-				-1.3
2,320,863	+				-0.5
2,320,863	+				-0.6
2,320,863	+				+2.3
2,320,863	+				+2.7
2,320,863	+				-2.3
2,320,866	-				+1.5
2,320,871	-				+0.7
2,320,871	-				+2.3
2,320,871	-				-2.0
2,320,887	+				+2.7
2,320,888	+				-1.2
2,320,942	+				+2.0
2,320,952	+				-0.1
2,321,056	+		PGA1_c22340	0.36	-0.0
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2,321,065	-		PGA1_c22340	0.39	+2.6
2,321,077	+		PGA1_c22340	0.43	+0.2
2,321,077	+		PGA1_c22340	0.43	+0.9
2,321,077	+		PGA1_c22340	0.43	+0.8
2,321,077	+		PGA1_c22340	0.43	-0.5
2,321,077	+		PGA1_c22340	0.43	-0.3
2,321,077	+		PGA1_c22340	0.43	-1.1
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2,321,085	-		PGA1_c22340	0.46	+1.4
2,321,085	-		PGA1_c22340	0.46	+2.7
2,321,085	-		PGA1_c22340	0.46	+1.2
2,321,085	-		PGA1_c22340	0.46	+0.7
2,321,191	+		PGA1_c22340	0.79	-1.4
2,321,191	+		PGA1_c22340	0.79	+0.9
2,321,191	+		PGA1_c22340	0.79	+1.9
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2,321,199	-		PGA1_c22340	0.82	+2.1
2,321,199	-		PGA1_c22340	0.82	+0.0
2,321,199	-		PGA1_c22340	0.82	-1.5
2,321,199	-		PGA1_c22340	0.82	-0.6
2,321,265	+				+0.6
2,321,266	-				-2.8
2,321,338	-				-1.4
2,321,368	+				-0.3
2,321,376	-				+0.3
2,321,380	+				+0.4
2,321,380	+				-1.4
2,321,388	-				+0.5
2,321,431	-		PGA1_c22350	0.10	-2.1
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2,321,482	+		PGA1_c22350	0.21	+1.2
2,321,490	-		PGA1_c22350	0.23	+0.6
2,321,508	+		PGA1_c22350	0.27	-2.1
2,321,508	+		PGA1_c22350	0.27	-0.7
2,321,516	-		PGA1_c22350	0.28	-2.8
2,321,516	-		PGA1_c22350	0.28	-0.5
2,321,516	-		PGA1_c22350	0.28	-2.0
2,321,516	-		PGA1_c22350	0.28	-0.1
2,321,516	-		PGA1_c22350	0.28	+1.4
2,321,575	-		PGA1_c22350	0.41	-0.8
2,321,575	-		PGA1_c22350	0.41	+1.0
2,321,630	-		PGA1_c22350	0.52	-0.2
2,321,631	-		PGA1_c22350	0.53	-2.1
2,321,706	+		PGA1_c22350	0.69	-0.9
2,321,716	+		PGA1_c22350	0.71	-1.5
2,321,720	+		PGA1_c22350	0.72	-0.5
2,321,776	+		PGA1_c22350	0.83	-1.5
2,321,784	-		PGA1_c22350	0.85	-0.5
2,321,784	-		PGA1_c22350	0.85	+0.3
2,321,814	+				+1.7
2,321,822	-				+0.6
2,321,822	-				+0.9
2,321,822	-				-0.8
2,321,822	-				-1.1
2,321,822	-				-0.3
2,321,822	-				+1.3
2,321,831	-				-2.2
2,321,841	-				+0.4
2,321,871	+				-1.5
2,321,871	+				+0.3
2,321,879	-				+0.4
2,321,887	-				-0.9