Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c21090

Experiment: m.b. nitrite 8 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. nitrite 8 mM
2,184,934	+				+0.7
2,184,996	+		PGA1_c21080	0.11	+0.2
2,185,115	+		PGA1_c21080	0.23	+1.6
2,185,115	+		PGA1_c21080	0.23	+1.9
2,185,215	+		PGA1_c21080	0.32	-2.7
2,185,215	+		PGA1_c21080	0.32	-0.6
2,185,223	-		PGA1_c21080	0.33	+0.8
2,185,255	+		PGA1_c21080	0.36	-0.6
2,185,309	+		PGA1_c21080	0.42	+1.9
2,185,309	+		PGA1_c21080	0.42	+1.4
2,185,325	-		PGA1_c21080	0.43	-2.1
2,185,344	+		PGA1_c21080	0.45	+3.1
2,185,430	+		PGA1_c21080	0.53	-0.2
2,185,432	+		PGA1_c21080	0.53	+0.5
2,185,468	+		PGA1_c21080	0.57	+0.1
2,185,479	-		PGA1_c21080	0.58	+1.0
2,185,553	+		PGA1_c21080	0.65	-2.2
2,185,693	-		PGA1_c21080	0.79	+2.5
2,185,703	-		PGA1_c21080	0.79	+0.9
2,185,703	-		PGA1_c21080	0.79	-0.9
2,185,786	+		PGA1_c21080	0.87	+0.2
2,185,798	-		PGA1_c21080	0.89	+0.3
2,185,832	-				-0.9
2,185,856	-				+0.8
2,185,880	+				-1.9
2,186,001	-				+1.9
2,186,066	-		PGA1_c21090	0.15	+0.2
2,186,095	-		PGA1_c21090	0.18	-0.7
2,186,137	+		PGA1_c21090	0.23	+0.4
2,186,166	+		PGA1_c21090	0.26	-1.6
2,186,189	-		PGA1_c21090	0.28	-1.7
2,186,200	-		PGA1_c21090	0.29	+1.3
2,186,205	-		PGA1_c21090	0.30	+0.8
2,186,296	-		PGA1_c21090	0.40	-2.4
2,186,314	+		PGA1_c21090	0.42	+2.0
2,186,317	-		PGA1_c21090	0.42	+1.0
2,186,317	-		PGA1_c21090	0.42	+0.7
2,186,374	-		PGA1_c21090	0.48	-0.2
2,186,374	-		PGA1_c21090	0.48	-0.4
2,186,409	+		PGA1_c21090	0.52	+0.8
2,186,417	-		PGA1_c21090	0.53	-0.6
2,186,447	-		PGA1_c21090	0.56	+1.4
2,186,485	-		PGA1_c21090	0.60	+1.5
2,186,489	+		PGA1_c21090	0.61	-0.6
2,186,526	+		PGA1_c21090	0.65	+1.6
2,186,653	+		PGA1_c21090	0.78	+3.0
2,186,653	+		PGA1_c21090	0.78	-2.8
2,186,706	-		PGA1_c21090	0.84	+1.3
2,186,714	+		PGA1_c21090	0.85	-1.9
2,186,789	+				+1.4
2,186,789	+				-1.1
2,186,789	+				+1.2
2,186,789	+				+0.7
2,186,811	+				-0.0
2,186,845	-				-1.2
2,186,859	+				+0.4
2,186,862	+				+0.9
2,186,862	+				-1.6
2,186,870	-				+0.9
2,186,870	-				-1.6
2,186,892	+				+0.7
2,186,892	+				+0.4
2,186,892	+				+1.0
2,186,892	+				-0.2
2,186,892	+				+0.4
2,186,900	-				+0.4
2,186,900	-				+0.8
2,186,915	-				+1.1
2,186,936	-		PGA1_c21100	0.12	-0.6
2,186,965	+		PGA1_c21100	0.15	+0.1
2,186,989	-		PGA1_c21100	0.18	+0.0
2,187,120	-		PGA1_c21100	0.34	+1.6
2,187,169	+		PGA1_c21100	0.40	+1.8
2,187,186	+		PGA1_c21100	0.42	+0.1
2,187,243	-		PGA1_c21100	0.49	-1.2
2,187,259	+		PGA1_c21100	0.51	-0.3
2,187,263	-		PGA1_c21100	0.52	+0.6
2,187,276	-		PGA1_c21100	0.53	+2.1
2,187,276	-		PGA1_c21100	0.53	-3.6
2,187,278	-		PGA1_c21100	0.54	+0.3
2,187,293	+		PGA1_c21100	0.55	+0.6
2,187,293	+		PGA1_c21100	0.55	-2.1
2,187,293	+		PGA1_c21100	0.55	+3.1
2,187,425	-		PGA1_c21100	0.72	+2.8
2,187,466	-		PGA1_c21100	0.77	+0.8
2,187,489	+		PGA1_c21100	0.79	-0.2
2,187,636	+				-1.3
2,187,712	+		PGA1_c21110	0.14	-0.4