Experiment: m.b. nitrite 8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01770 and PGA1_c01780 are separated by 12 nucleotides PGA1_c01780 and PGA1_c01790 are separated by 12 nucleotides PGA1_c01790 and PGA1_c01800 are separated by 0 nucleotides PGA1_c01800 and PGA1_c01810 are separated by 208 nucleotides
PGA1_c01770: PGA1_c01770 - 30S ribosomal protein S5, at 163,494 to 164,060
_c01770
PGA1_c01780: PGA1_c01780 - 50S ribosomal protein L30, at 164,073 to 164,261
_c01780
PGA1_c01790: PGA1_c01790 - hypothetical protein, at 164,274 to 164,468
_c01790
PGA1_c01800: PGA1_c01800 - hypothetical protein, at 164,469 to 164,687
_c01800
PGA1_c01810: PGA1_c01810 - putative transcriptional regulator, GntR family, at 164,896 to 166,308
_c01810
Position (kb) 164
165 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 164.341 kb on - strand, within PGA1_c01790 at 164.439 kb on + strand, within PGA1_c01790 at 164.442 kb on - strand, within PGA1_c01790 at 164.442 kb on - strand, within PGA1_c01790 at 164.447 kb on - strand, within PGA1_c01790 at 164.447 kb on - strand, within PGA1_c01790 at 164.457 kb on - strand at 164.489 kb on + strand at 164.497 kb on - strand, within PGA1_c01800 at 164.502 kb on - strand, within PGA1_c01800 at 164.504 kb on + strand, within PGA1_c01800 at 164.504 kb on + strand, within PGA1_c01800 at 164.504 kb on + strand, within PGA1_c01800 at 164.504 kb on + strand, within PGA1_c01800 at 164.512 kb on - strand, within PGA1_c01800 at 164.512 kb on - strand, within PGA1_c01800 at 164.512 kb on - strand, within PGA1_c01800 at 164.512 kb on - strand, within PGA1_c01800 at 164.567 kb on + strand, within PGA1_c01800 at 164.608 kb on + strand, within PGA1_c01800 at 164.626 kb on - strand, within PGA1_c01800 at 164.648 kb on + strand, within PGA1_c01800 at 164.671 kb on + strand at 164.671 kb on + strand at 164.761 kb on + strand at 164.785 kb on - strand at 164.798 kb on + strand at 164.806 kb on - strand at 164.853 kb on + strand at 164.859 kb on - strand at 164.889 kb on + strand at 164.899 kb on + strand at 164.902 kb on - strand at 164.907 kb on - strand at 164.918 kb on - strand at 164.948 kb on + strand at 164.958 kb on - strand at 165.015 kb on + strand at 165.055 kb on + strand, within PGA1_c01810 at 165.070 kb on - strand, within PGA1_c01810 at 165.072 kb on + strand, within PGA1_c01810 at 165.124 kb on + strand, within PGA1_c01810 at 165.132 kb on - strand, within PGA1_c01810 at 165.137 kb on - strand, within PGA1_c01810 at 165.137 kb on - strand, within PGA1_c01810 at 165.189 kb on - strand, within PGA1_c01810 at 165.194 kb on - strand, within PGA1_c01810 at 165.199 kb on - strand, within PGA1_c01810 at 165.221 kb on - strand, within PGA1_c01810 at 165.273 kb on - strand, within PGA1_c01810 at 165.312 kb on + strand, within PGA1_c01810 at 165.312 kb on + strand, within PGA1_c01810 at 165.312 kb on + strand, within PGA1_c01810 at 165.320 kb on - strand, within PGA1_c01810 at 165.326 kb on + strand, within PGA1_c01810 at 165.344 kb on - strand, within PGA1_c01810 at 165.349 kb on - strand, within PGA1_c01810 at 165.381 kb on + strand, within PGA1_c01810 at 165.381 kb on + strand, within PGA1_c01810 at 165.432 kb on + strand, within PGA1_c01810 at 165.458 kb on - strand, within PGA1_c01810 at 165.458 kb on - strand, within PGA1_c01810 at 165.464 kb on + strand, within PGA1_c01810 at 165.498 kb on + strand, within PGA1_c01810 at 165.498 kb on + strand, within PGA1_c01810 at 165.565 kb on + strand, within PGA1_c01810 at 165.589 kb on - strand, within PGA1_c01810 at 165.622 kb on - strand, within PGA1_c01810 at 165.622 kb on - strand, within PGA1_c01810
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 8 mM remove 164,341 - PGA1_c01790 0.34 -0.2 164,439 + PGA1_c01790 0.85 -0.6 164,442 - PGA1_c01790 0.86 -1.1 164,442 - PGA1_c01790 0.86 -2.6 164,447 - PGA1_c01790 0.89 +1.8 164,447 - PGA1_c01790 0.89 -0.1 164,457 - -0.7 164,489 + +0.8 164,497 - PGA1_c01800 0.13 -1.1 164,502 - PGA1_c01800 0.15 +0.0 164,504 + PGA1_c01800 0.16 +0.8 164,504 + PGA1_c01800 0.16 +0.2 164,504 + PGA1_c01800 0.16 +1.2 164,504 + PGA1_c01800 0.16 +1.9 164,512 - PGA1_c01800 0.20 -3.8 164,512 - PGA1_c01800 0.20 +0.5 164,512 - PGA1_c01800 0.20 +0.0 164,512 - PGA1_c01800 0.20 +1.2 164,567 + PGA1_c01800 0.45 -2.3 164,608 + PGA1_c01800 0.63 +1.5 164,626 - PGA1_c01800 0.72 -2.5 164,648 + PGA1_c01800 0.82 +2.0 164,671 + +0.5 164,671 + -0.3 164,761 + -0.0 164,785 - +0.5 164,798 + +0.7 164,806 - -0.5 164,853 + -1.2 164,859 - +0.9 164,889 + -0.6 164,899 + -1.4 164,902 - +1.8 164,907 - -1.7 164,918 - -0.2 164,948 + +0.6 164,958 - -2.6 165,015 + -0.7 165,055 + PGA1_c01810 0.11 -0.7 165,070 - PGA1_c01810 0.12 +0.6 165,072 + PGA1_c01810 0.12 -0.6 165,124 + PGA1_c01810 0.16 +0.1 165,132 - PGA1_c01810 0.17 -0.0 165,137 - PGA1_c01810 0.17 -2.6 165,137 - PGA1_c01810 0.17 +0.8 165,189 - PGA1_c01810 0.21 +1.1 165,194 - PGA1_c01810 0.21 -1.2 165,199 - PGA1_c01810 0.21 -0.1 165,221 - PGA1_c01810 0.23 -2.2 165,273 - PGA1_c01810 0.27 -1.0 165,312 + PGA1_c01810 0.29 -1.8 165,312 + PGA1_c01810 0.29 -0.3 165,312 + PGA1_c01810 0.29 -2.4 165,320 - PGA1_c01810 0.30 +0.2 165,326 + PGA1_c01810 0.30 -3.0 165,344 - PGA1_c01810 0.32 -1.7 165,349 - PGA1_c01810 0.32 +2.8 165,381 + PGA1_c01810 0.34 +0.1 165,381 + PGA1_c01810 0.34 -1.6 165,432 + PGA1_c01810 0.38 +0.3 165,458 - PGA1_c01810 0.40 +0.6 165,458 - PGA1_c01810 0.40 +1.3 165,464 + PGA1_c01810 0.40 -0.1 165,498 + PGA1_c01810 0.43 +1.1 165,498 + PGA1_c01810 0.43 -1.9 165,565 + PGA1_c01810 0.47 +1.4 165,589 - PGA1_c01810 0.49 -2.7 165,622 - PGA1_c01810 0.51 +1.6 165,622 - PGA1_c01810 0.51 +0.8
Or see this region's nucleotide sequence