Strain Fitness in Marinobacter adhaerens HP15 around HP15_1623

Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1622 and HP15_1623 overlap by 4 nucleotidesHP15_1623 and HP15_1624 are separated by 30 nucleotidesHP15_1624 and HP15_1625 are separated by 193 nucleotides HP15_1622: HP15_1622 - NADH dehydrogenase subunit L, at 1,719,046 to 1,720,665 _1622 HP15_1623: HP15_1623 - conserved hypothetical protein, at 1,720,662 to 1,723,118 _1623 HP15_1624: HP15_1624 - YebG, at 1,723,149 to 1,723,376 _1624 HP15_1625: HP15_1625 - 3-oxoacyl-(acyl carrier protein) synthase III, at 1,723,570 to 1,724,538 _1625 Position (kb) 1720 1721 1722 1723 1724Strain fitness (log2 ratio) -2 -1 0 1at 1719.672 kb on + strand, within HP15_1622at 1719.771 kb on + strand, within HP15_1622at 1719.817 kb on - strand, within HP15_1622at 1719.817 kb on - strand, within HP15_1622at 1719.827 kb on - strand, within HP15_1622at 1719.961 kb on - strand, within HP15_1622at 1720.010 kb on + strand, within HP15_1622at 1720.038 kb on + strandat 1720.080 kb on + strand, within HP15_1622at 1720.178 kb on - strand, within HP15_1622at 1720.427 kb on + strand, within HP15_1622at 1720.514 kb on + strandat 1720.628 kb on - strandat 1720.689 kb on + strandat 1720.723 kb on - strandat 1720.774 kb on + strandat 1720.780 kb on - strandat 1720.856 kb on + strandat 1720.859 kb on - strandat 1720.892 kb on + strandat 1721.010 kb on + strand, within HP15_1623at 1721.028 kb on - strand, within HP15_1623at 1721.028 kb on - strand, within HP15_1623at 1721.093 kb on - strand, within HP15_1623at 1721.233 kb on + strand, within HP15_1623at 1721.242 kb on - strand, within HP15_1623at 1721.281 kb on - strand, within HP15_1623at 1721.289 kb on + strand, within HP15_1623at 1721.333 kb on - strand, within HP15_1623at 1721.344 kb on + strand, within HP15_1623at 1721.352 kb on - strand, within HP15_1623at 1721.362 kb on - strand, within HP15_1623at 1721.409 kb on + strand, within HP15_1623at 1721.481 kb on - strand, within HP15_1623at 1721.486 kb on - strand, within HP15_1623at 1721.492 kb on - strand, within HP15_1623at 1721.670 kb on - strand, within HP15_1623at 1721.713 kb on + strand, within HP15_1623at 1721.749 kb on + strand, within HP15_1623at 1721.990 kb on + strand, within HP15_1623at 1721.990 kb on + strand, within HP15_1623at 1722.016 kb on - strand, within HP15_1623at 1722.066 kb on + strand, within HP15_1623at 1722.073 kb on + strand, within HP15_1623at 1722.081 kb on - strand, within HP15_1623at 1722.089 kb on + strand, within HP15_1623at 1722.138 kb on - strand, within HP15_1623at 1722.138 kb on - strand, within HP15_1623at 1722.152 kb on + strand, within HP15_1623at 1722.229 kb on + strand, within HP15_1623at 1722.331 kb on - strand, within HP15_1623at 1722.399 kb on + strand, within HP15_1623at 1722.400 kb on - strand, within HP15_1623at 1722.407 kb on - strand, within HP15_1623at 1722.565 kb on - strand, within HP15_1623at 1722.589 kb on + strand, within HP15_1623at 1722.589 kb on + strand, within HP15_1623at 1722.597 kb on - strand, within HP15_1623at 1722.606 kb on + strand, within HP15_1623at 1722.758 kb on - strand, within HP15_1623at 1722.834 kb on + strand, within HP15_1623at 1722.890 kb on + strandat 1722.963 kb on + strandat 1722.963 kb on + strandat 1723.021 kb on - strandat 1723.076 kb on - strandat 1723.138 kb on + strandat 1723.202 kb on + strand, within HP15_1624at 1723.309 kb on + strand, within HP15_1624at 1723.376 kb on + strandat 1723.434 kb on + strandat 1723.584 kb on + strandat 1723.592 kb on - strandat 1723.664 kb on + strandat 1723.676 kb on - strand, within HP15_1625at 1723.923 kb on - strand, within HP15_1625

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium lysine 5 mM
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1,719,672 + HP15_1622 0.39 +0.2
1,719,771 + HP15_1622 0.45 +0.2
1,719,817 - HP15_1622 0.48 -0.2
1,719,817 - HP15_1622 0.48 -2.3
1,719,827 - HP15_1622 0.48 +1.0
1,719,961 - HP15_1622 0.56 +0.6
1,720,010 + HP15_1622 0.60 -0.9
1,720,038 + +0.2
1,720,080 + HP15_1622 0.64 +0.7
1,720,178 - HP15_1622 0.70 -0.3
1,720,427 + HP15_1622 0.85 +0.7
1,720,514 + -0.0
1,720,628 - +0.1
1,720,689 + +0.0
1,720,723 - -0.4
1,720,774 + +0.2
1,720,780 - -0.3
1,720,856 + -0.1
1,720,859 - +0.3
1,720,892 + -0.6
1,721,010 + HP15_1623 0.14 +0.3
1,721,028 - HP15_1623 0.15 -0.7
1,721,028 - HP15_1623 0.15 +0.2
1,721,093 - HP15_1623 0.18 +0.5
1,721,233 + HP15_1623 0.23 -0.0
1,721,242 - HP15_1623 0.24 -0.6
1,721,281 - HP15_1623 0.25 +0.1
1,721,289 + HP15_1623 0.26 -1.1
1,721,333 - HP15_1623 0.27 -0.0
1,721,344 + HP15_1623 0.28 +0.2
1,721,352 - HP15_1623 0.28 -0.3
1,721,362 - HP15_1623 0.28 +0.1
1,721,409 + HP15_1623 0.30 +1.0
1,721,481 - HP15_1623 0.33 +0.2
1,721,486 - HP15_1623 0.34 -0.3
1,721,492 - HP15_1623 0.34 +0.0
1,721,670 - HP15_1623 0.41 +0.1
1,721,713 + HP15_1623 0.43 -0.1
1,721,749 + HP15_1623 0.44 -0.6
1,721,990 + HP15_1623 0.54 -0.1
1,721,990 + HP15_1623 0.54 -0.3
1,722,016 - HP15_1623 0.55 +0.1
1,722,066 + HP15_1623 0.57 -0.4
1,722,073 + HP15_1623 0.57 +0.1
1,722,081 - HP15_1623 0.58 -2.2
1,722,089 + HP15_1623 0.58 -0.5
1,722,138 - HP15_1623 0.60 +0.0
1,722,138 - HP15_1623 0.60 -1.0
1,722,152 + HP15_1623 0.61 -0.0
1,722,229 + HP15_1623 0.64 -0.2
1,722,331 - HP15_1623 0.68 -0.7
1,722,399 + HP15_1623 0.71 -0.4
1,722,400 - HP15_1623 0.71 +0.5
1,722,407 - HP15_1623 0.71 +0.1
1,722,565 - HP15_1623 0.77 +0.4
1,722,589 + HP15_1623 0.78 +0.8
1,722,589 + HP15_1623 0.78 -0.3
1,722,597 - HP15_1623 0.79 -0.9
1,722,606 + HP15_1623 0.79 -0.7
1,722,758 - HP15_1623 0.85 -0.1
1,722,834 + HP15_1623 0.88 -0.3
1,722,890 + -0.0
1,722,963 + -0.2
1,722,963 + +0.4
1,723,021 - -0.2
1,723,076 - -0.3
1,723,138 + -0.0
1,723,202 + HP15_1624 0.23 -0.1
1,723,309 + HP15_1624 0.70 +0.2
1,723,376 + -0.4
1,723,434 + -0.8
1,723,584 + -1.5
1,723,592 - +0.4
1,723,664 + -0.9
1,723,676 - HP15_1625 0.11 -1.3
1,723,923 - HP15_1625 0.36 -0.5

Or see this region's nucleotide sequence