Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c14000

Experiment: m.b. nitrite 8 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. nitrite 8 mM
1,447,845	+		PGA1_c13990	0.23	+0.6
1,447,901	-		PGA1_c13990	0.28	+2.1
1,447,905	+		PGA1_c13990	0.29	-1.6
1,447,931	+		PGA1_c13990	0.31	+0.0
1,447,941	+		PGA1_c13990	0.32	-1.1
1,447,941	-		PGA1_c13990	0.32	-1.2
1,447,962	+		PGA1_c13990	0.34	-0.1
1,448,076	-		PGA1_c13990	0.45	+0.6
1,448,078	+		PGA1_c13990	0.45	+0.1
1,448,108	+		PGA1_c13990	0.48	+2.4
1,448,108	+		PGA1_c13990	0.48	-1.0
1,448,108	+		PGA1_c13990	0.48	-2.1
1,448,108	+		PGA1_c13990	0.48	-0.4
1,448,116	-		PGA1_c13990	0.48	-1.6
1,448,170	+		PGA1_c13990	0.53	-0.3
1,448,194	-		PGA1_c13990	0.56	-1.9
1,448,200	+		PGA1_c13990	0.56	-0.9
1,448,259	+		PGA1_c13990	0.62	+1.7
1,448,316	+		PGA1_c13990	0.67	-0.8
1,448,398	-		PGA1_c13990	0.75	+0.1
1,448,633	+				-0.7
1,448,633	+				-1.0
1,448,641	-				+0.9
1,448,644	+				+0.9
1,448,644	+				+0.5
1,448,652	-				-3.5
1,448,652	-				-1.0
1,448,652	-				-1.2
1,448,662	+				-1.0
1,448,734	+				+0.4
1,448,735	-				-2.2
1,448,737	+				+0.4
1,448,788	-				+1.3
1,448,942	+		PGA1_c14000	0.21	+2.5
1,448,950	-		PGA1_c14000	0.22	+0.6
1,448,982	+		PGA1_c14000	0.24	+1.3
1,448,982	+		PGA1_c14000	0.24	-1.3
1,448,990	-		PGA1_c14000	0.25	+1.2
1,448,990	-		PGA1_c14000	0.25	+0.4
1,449,008	+		PGA1_c14000	0.26	-2.6
1,449,009	+		PGA1_c14000	0.26	+0.4
1,449,016	-		PGA1_c14000	0.27	+1.2
1,449,086	-		PGA1_c14000	0.32	-0.3
1,449,088	-		PGA1_c14000	0.32	-1.8
1,449,121	+		PGA1_c14000	0.35	-1.1
1,449,179	+		PGA1_c14000	0.39	-1.2
1,449,187	-		PGA1_c14000	0.40	+0.4
1,449,227	+		PGA1_c14000	0.43	+2.2
1,449,227	+		PGA1_c14000	0.43	-2.2
1,449,233	-		PGA1_c14000	0.43	-1.3
1,449,233	-		PGA1_c14000	0.43	+1.4
1,449,245	-		PGA1_c14000	0.44	-0.9
1,449,410	-		PGA1_c14000	0.57	+2.4
1,449,458	+		PGA1_c14000	0.61	-0.2
1,449,471	-		PGA1_c14000	0.62	-1.1
1,449,471	-		PGA1_c14000	0.62	+0.2
1,449,567	-		PGA1_c14000	0.69	-0.6
1,449,569	+		PGA1_c14000	0.69	+0.3
1,449,611	+		PGA1_c14000	0.72	+1.2
1,449,611	+		PGA1_c14000	0.72	-0.8
1,449,639	+		PGA1_c14000	0.75	+1.5
1,449,646	+		PGA1_c14000	0.75	-0.8
1,449,647	-		PGA1_c14000	0.75	+1.5
1,449,652	-		PGA1_c14000	0.76	+1.9
1,449,821	+		PGA1_c14000	0.89	-0.3
1,449,847	-				+0.3
1,449,861	-				+1.1
1,449,903	-				-0.3
1,449,948	-				-2.6
1,449,952	+				-2.3
1,449,981	-				+0.2
1,449,981	-				+1.6
1,449,982	-				-0.5
1,449,986	+				-1.8
1,449,986	-				+2.4
1,450,035	+				-2.3
1,450,043	-				+0.8
1,450,043	-				-0.8
1,450,043	-				-1.9
1,450,043	-				+0.8
1,450,043	-				-1.0
1,450,059	+				+0.1
1,450,113	+				-3.2
1,450,194	+		PGA1_c14010	0.13	+0.5
1,450,282	-		PGA1_c14010	0.19	+0.4
1,450,557	+		PGA1_c14010	0.38	+0.6
1,450,565	-		PGA1_c14010	0.39	-1.6
1,450,640	-		PGA1_c14010	0.44	+0.0
1,450,748	+		PGA1_c14010	0.51	+0.6
1,450,773	+		PGA1_c14010	0.53	-0.8
1,450,773	+		PGA1_c14010	0.53	+1.3
1,450,829	+		PGA1_c14010	0.57	+0.8
1,450,837	-		PGA1_c14010	0.58	-0.9
1,450,837	-		PGA1_c14010	0.58	+1.0