Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c13720

Experiment: m.b. nitrite 8 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. nitrite 8 mM
1,415,670	-		PGA1_c13710	0.60	-0.4
1,415,670	-		PGA1_c13710	0.60	-1.5
1,415,728	+		PGA1_c13710	0.62	-2.0
1,415,728	+		PGA1_c13710	0.62	+1.6
1,415,736	-		PGA1_c13710	0.62	-0.8
1,415,736	-		PGA1_c13710	0.62	+0.0
1,415,736	-		PGA1_c13710	0.62	-1.1
1,415,752	+		PGA1_c13710	0.63	-1.5
1,415,777	+		PGA1_c13710	0.64	+1.0
1,415,785	+		PGA1_c13710	0.64	-0.6
1,415,795	+		PGA1_c13710	0.65	+0.3
1,415,822	+		PGA1_c13710	0.66	-0.7
1,415,837	+		PGA1_c13710	0.66	+0.2
1,415,845	-		PGA1_c13710	0.67	-0.7
1,415,852	+		PGA1_c13710	0.67	+0.5
1,416,057	-		PGA1_c13710	0.75	+0.7
1,416,062	-		PGA1_c13710	0.75	+0.6
1,416,097	-		PGA1_c13710	0.77	-2.0
1,416,106	-		PGA1_c13710	0.77	+0.1
1,416,106	-		PGA1_c13710	0.77	-1.1
1,416,154	+		PGA1_c13710	0.79	+0.4
1,416,159	+		PGA1_c13710	0.79	+0.1
1,416,167	-		PGA1_c13710	0.80	-2.1
1,416,167	-		PGA1_c13710	0.80	+1.5
1,416,169	+		PGA1_c13710	0.80	+0.3
1,416,169	+		PGA1_c13710	0.80	-3.0
1,416,177	-		PGA1_c13710	0.80	-0.1
1,416,266	+		PGA1_c13710	0.84	-0.3
1,416,322	-		PGA1_c13710	0.86	-2.9
1,416,331	+		PGA1_c13710	0.86	-1.8
1,416,331	+		PGA1_c13710	0.86	-1.9
1,416,339	-		PGA1_c13710	0.87	+0.5
1,416,405	-		PGA1_c13710	0.89	+0.5
1,416,405	-		PGA1_c13710	0.89	-3.2
1,416,419	+		PGA1_c13710	0.90	+1.2
1,416,426	-				+1.3
1,416,427	-				-0.9
1,416,459	-				+0.2
1,416,556	+				-0.3
1,416,636	+				+1.0
1,416,644	-				+0.7
1,416,652	+				-0.6
1,416,652	+				+0.5
1,416,652	-				-2.8
1,416,652	-				+0.2
1,416,660	-				-3.6
1,416,663	+				+1.0
1,416,741	+				+0.2
1,416,767	+		PGA1_c13720	0.11	-0.5
1,416,767	+		PGA1_c13720	0.11	+0.1
1,416,767	-		PGA1_c13720	0.11	+1.6
1,416,775	-		PGA1_c13720	0.12	+0.3
1,416,827	+		PGA1_c13720	0.18	+0.9
1,416,835	-		PGA1_c13720	0.19	+1.3
1,416,835	-		PGA1_c13720	0.19	-2.3
1,416,840	-		PGA1_c13720	0.20	+2.1
1,416,869	+		PGA1_c13720	0.23	+1.1
1,416,906	+		PGA1_c13720	0.27	+0.8
1,416,906	+		PGA1_c13720	0.27	+1.5
1,416,906	+		PGA1_c13720	0.27	+0.2
1,416,914	-		PGA1_c13720	0.28	-1.7
1,416,914	-		PGA1_c13720	0.28	+0.6
1,416,999	+		PGA1_c13720	0.38	+1.2
1,416,999	+		PGA1_c13720	0.38	+0.9
1,417,000	+		PGA1_c13720	0.38	+0.2
1,417,007	-		PGA1_c13720	0.39	-0.4
1,417,007	-		PGA1_c13720	0.39	+1.6
1,417,069	+		PGA1_c13720	0.46	+0.7
1,417,100	-		PGA1_c13720	0.49	-0.1
1,417,109	+		PGA1_c13720	0.50	+0.6
1,417,110	-		PGA1_c13720	0.50	+0.3
1,417,175	-		PGA1_c13720	0.58	+0.2
1,417,185	-		PGA1_c13720	0.59	-1.8
1,417,214	+		PGA1_c13720	0.62	+0.9
1,417,248	+		PGA1_c13720	0.66	+0.3
1,417,360	-		PGA1_c13720	0.79	-0.8
1,417,361	-		PGA1_c13720	0.79	+0.9
1,417,362	+		PGA1_c13720	0.79	-0.1
1,417,365	-		PGA1_c13720	0.80	-1.5
1,417,365	-		PGA1_c13720	0.80	-0.5
1,417,365	-		PGA1_c13720	0.80	+1.5
1,417,393	+		PGA1_c13720	0.83	+0.6
1,417,405	+		PGA1_c13720	0.84	+1.7
1,417,413	-		PGA1_c13720	0.85	-0.8
1,417,413	-		PGA1_c13720	0.85	+1.3
1,417,413	-		PGA1_c13720	0.85	-0.2
1,417,447	-		PGA1_c13720	0.89	+0.9
1,417,461	-				-0.6
1,417,520	+				-1.3
1,417,520	+				-0.0
1,417,523	-				+1.7
1,417,526	-				-0.5
1,417,528	-				+1.6
1,417,576	+				+2.0
1,417,619	-				-0.0
1,417,655	-		PGA1_c13730	0.11	-0.4
1,417,666	+		PGA1_c13730	0.12	+0.5
1,417,666	+		PGA1_c13730	0.12	-0.1
1,417,666	+		PGA1_c13730	0.12	+0.8
1,417,739	-		PGA1_c13730	0.20	-1.0
1,417,798	+		PGA1_c13730	0.25	+0.2
1,417,813	+		PGA1_c13730	0.27	-0.6
1,417,834	+		PGA1_c13730	0.29	+1.5
1,417,894	+		PGA1_c13730	0.35	-1.0
1,417,894	+		PGA1_c13730	0.35	-0.2
1,417,899	+		PGA1_c13730	0.35	+0.5
1,417,902	-		PGA1_c13730	0.36	+0.3
1,417,902	-		PGA1_c13730	0.36	+0.5
1,417,902	-		PGA1_c13730	0.36	-0.1
1,417,902	-		PGA1_c13730	0.36	+1.3
1,417,907	-		PGA1_c13730	0.36	+1.8
1,417,924	+		PGA1_c13730	0.38	+0.0
1,417,929	+		PGA1_c13730	0.38	+1.8
1,417,929	+		PGA1_c13730	0.38	-0.5
1,417,937	-		PGA1_c13730	0.39	+0.1
1,417,943	+		PGA1_c13730	0.40	-1.0
1,417,947	-		PGA1_c13730	0.40	-0.2
1,417,948	-		PGA1_c13730	0.40	-0.7
1,417,968	-		PGA1_c13730	0.42	+2.2
1,418,008	+		PGA1_c13730	0.46	-1.3
1,418,008	+		PGA1_c13730	0.46	-2.0
1,418,013	+		PGA1_c13730	0.47	-1.8
1,418,016	-		PGA1_c13730	0.47	+1.3
1,418,023	+		PGA1_c13730	0.47	-0.7
1,418,023	+		PGA1_c13730	0.47	-0.2
1,418,023	+		PGA1_c13730	0.47	+1.0
1,418,045	-		PGA1_c13730	0.50	-1.9
1,418,120	+		PGA1_c13730	0.57	-1.3
1,418,220	-		PGA1_c13730	0.67	-1.7
1,418,245	-		PGA1_c13730	0.69	+0.8
1,418,245	-		PGA1_c13730	0.69	+0.4
1,418,349	+		PGA1_c13730	0.80	-3.1
1,418,374	-		PGA1_c13730	0.82	-2.4
1,418,450	-		PGA1_c13730	0.89	-1.1
1,418,455	-				+1.0
1,418,455	-				-1.3
1,418,540	+				-0.4