Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c13140

Experiment: m.b. nitrite 8 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. nitrite 8 mM
1,357,565	+		PGA1_c13130	0.36	+0.2
1,357,577	+		PGA1_c13130	0.37	+2.2
1,357,585	-		PGA1_c13130	0.37	+0.3
1,357,655	+		PGA1_c13130	0.42	-0.2
1,357,714	+		PGA1_c13130	0.46	+0.3
1,357,886	+		PGA1_c13130	0.58	-1.1
1,357,894	-		PGA1_c13130	0.58	+0.1
1,358,107	-		PGA1_c13130	0.73	-2.0
1,358,313	+		PGA1_c13130	0.87	-0.1
1,358,313	+		PGA1_c13130	0.87	+0.3
1,358,332	+		PGA1_c13130	0.88	-0.2
1,358,361	+				-2.9
1,358,372	+				-0.3
1,358,397	+				-0.5
1,358,453	+				-0.5
1,358,590	+				-1.5
1,358,590	+				-0.5
1,358,590	+				+0.9
1,358,590	+				+0.4
1,358,598	-				-1.6
1,358,611	-				-0.7
1,358,629	+				+1.5
1,358,674	+		PGA1_c13140	0.11	+0.5
1,358,682	-		PGA1_c13140	0.12	+0.6
1,358,682	-		PGA1_c13140	0.12	+0.0
1,358,684	+		PGA1_c13140	0.12	+0.3
1,358,684	+		PGA1_c13140	0.12	-0.1
1,358,692	-		PGA1_c13140	0.13	-0.2
1,358,692	-		PGA1_c13140	0.13	-1.3
1,358,692	-		PGA1_c13140	0.13	+0.2
1,358,692	-		PGA1_c13140	0.13	-2.3
1,358,692	-		PGA1_c13140	0.13	-0.6
1,358,735	+		PGA1_c13140	0.17	+0.3
1,358,768	-		PGA1_c13140	0.20	+0.5
1,358,840	+		PGA1_c13140	0.27	+0.6
1,358,840	+		PGA1_c13140	0.27	-0.6
1,358,850	+		PGA1_c13140	0.28	+1.4
1,358,853	-		PGA1_c13140	0.28	-0.1
1,358,858	-		PGA1_c13140	0.29	+0.9
1,358,858	-		PGA1_c13140	0.29	+0.2
1,358,863	-		PGA1_c13140	0.29	-0.6
1,358,866	+		PGA1_c13140	0.29	+0.2
1,358,872	+		PGA1_c13140	0.30	+0.4
1,359,065	-		PGA1_c13140	0.48	+0.1
1,359,072	-		PGA1_c13140	0.49	-0.6
1,359,108	+		PGA1_c13140	0.52	+1.0
1,359,128	+		PGA1_c13140	0.54	-1.5
1,359,136	-		PGA1_c13140	0.55	+0.3
1,359,146	+		PGA1_c13140	0.56	+1.2
1,359,146	+		PGA1_c13140	0.56	+0.4
1,359,146	+		PGA1_c13140	0.56	+0.9
1,359,149	-		PGA1_c13140	0.56	+0.8
1,359,154	-		PGA1_c13140	0.57	-0.1
1,359,164	-		PGA1_c13140	0.58	-0.8
1,359,180	+		PGA1_c13140	0.59	-0.4
1,359,181	+		PGA1_c13140	0.59	-1.9
1,359,198	-		PGA1_c13140	0.61	+1.6
1,359,217	+		PGA1_c13140	0.63	+0.5
1,359,248	+		PGA1_c13140	0.66	-3.1
1,359,275	-		PGA1_c13140	0.68	-2.2
1,359,293	-		PGA1_c13140	0.70	-1.3
1,359,305	-		PGA1_c13140	0.71	-0.2
1,359,344	-		PGA1_c13140	0.75	+1.1
1,359,359	-		PGA1_c13140	0.76	-0.2
1,359,400	+		PGA1_c13140	0.80	+0.3
1,359,400	+		PGA1_c13140	0.80	+0.7
1,359,545	+				-2.6
1,359,549	+				-1.9
1,359,614	-				-0.1
1,359,651	-				-1.5
1,359,656	-				+1.0
1,359,656	-				-0.6
1,359,686	+				-0.5
1,359,686	+				+0.4
1,359,687	+				-2.6
1,359,715	-				-0.9
1,359,822	-				-0.3
1,359,843	+				-0.1
1,359,957	-		PGA1_c13150	0.13	+0.1
1,359,969	-		PGA1_c13150	0.14	+1.0
1,360,059	+		PGA1_c13150	0.19	-1.1
1,360,059	+		PGA1_c13150	0.19	-2.7
1,360,128	+		PGA1_c13150	0.23	-1.9
1,360,136	-		PGA1_c13150	0.23	-0.1
1,360,136	-		PGA1_c13150	0.23	+0.5
1,360,136	-		PGA1_c13150	0.23	+0.1
1,360,136	-		PGA1_c13150	0.23	+0.7
1,360,183	+		PGA1_c13150	0.26	-0.2
1,360,185	+		PGA1_c13150	0.26	-3.3
1,360,185	+		PGA1_c13150	0.26	+1.2
1,360,191	-		PGA1_c13150	0.26	-2.2
1,360,196	-		PGA1_c13150	0.27	+3.3
1,360,286	-		PGA1_c13150	0.32	-0.4
1,360,286	-		PGA1_c13150	0.32	+0.7
1,360,364	-		PGA1_c13150	0.36	-1.2
1,360,412	+		PGA1_c13150	0.39	-1.3
1,360,510	+		PGA1_c13150	0.44	+0.4
1,360,510	+		PGA1_c13150	0.44	-1.8
1,360,547	+		PGA1_c13150	0.46	+1.8
1,360,552	+		PGA1_c13150	0.46	-0.2
1,360,560	-		PGA1_c13150	0.47	+1.5
1,360,560	-		PGA1_c13150	0.47	+0.2