Experiment: m.b. nitrite 8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c13130 and PGA1_c13140 are separated by 45 nucleotides PGA1_c13140 and PGA1_c13150 are separated by 103 nucleotides
PGA1_c13130: PGA1_c13130 - TRAP transporter, subunit DctM, at 1,357,033 to 1,358,508
_c13130
PGA1_c13140: PGA1_c13140 - putative TRAP transporter extracellular solute binding protein, family 7, at 1,358,554 to 1,359,612
_c13140
PGA1_c13150: PGA1_c13150 - di-haem cytochrome c peroxidase-like protein, at 1,359,716 to 1,361,515
_c13150
Position (kb)
1358
1359
1360 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1357.565 kb on + strand, within PGA1_c13130 at 1357.577 kb on + strand, within PGA1_c13130 at 1357.585 kb on - strand, within PGA1_c13130 at 1357.655 kb on + strand, within PGA1_c13130 at 1357.714 kb on + strand, within PGA1_c13130 at 1357.886 kb on + strand, within PGA1_c13130 at 1357.894 kb on - strand, within PGA1_c13130 at 1358.107 kb on - strand, within PGA1_c13130 at 1358.313 kb on + strand, within PGA1_c13130 at 1358.313 kb on + strand, within PGA1_c13130 at 1358.332 kb on + strand, within PGA1_c13130 at 1358.361 kb on + strand at 1358.372 kb on + strand at 1358.397 kb on + strand at 1358.453 kb on + strand at 1358.590 kb on + strand at 1358.590 kb on + strand at 1358.590 kb on + strand at 1358.590 kb on + strand at 1358.598 kb on - strand at 1358.611 kb on - strand at 1358.629 kb on + strand at 1358.674 kb on + strand, within PGA1_c13140 at 1358.682 kb on - strand, within PGA1_c13140 at 1358.682 kb on - strand, within PGA1_c13140 at 1358.684 kb on + strand, within PGA1_c13140 at 1358.684 kb on + strand, within PGA1_c13140 at 1358.692 kb on - strand, within PGA1_c13140 at 1358.692 kb on - strand, within PGA1_c13140 at 1358.692 kb on - strand, within PGA1_c13140 at 1358.692 kb on - strand, within PGA1_c13140 at 1358.692 kb on - strand, within PGA1_c13140 at 1358.735 kb on + strand, within PGA1_c13140 at 1358.768 kb on - strand, within PGA1_c13140 at 1358.840 kb on + strand, within PGA1_c13140 at 1358.840 kb on + strand, within PGA1_c13140 at 1358.850 kb on + strand, within PGA1_c13140 at 1358.853 kb on - strand, within PGA1_c13140 at 1358.858 kb on - strand, within PGA1_c13140 at 1358.858 kb on - strand, within PGA1_c13140 at 1358.863 kb on - strand, within PGA1_c13140 at 1358.866 kb on + strand, within PGA1_c13140 at 1358.872 kb on + strand, within PGA1_c13140 at 1359.065 kb on - strand, within PGA1_c13140 at 1359.072 kb on - strand, within PGA1_c13140 at 1359.108 kb on + strand, within PGA1_c13140 at 1359.128 kb on + strand, within PGA1_c13140 at 1359.136 kb on - strand, within PGA1_c13140 at 1359.146 kb on + strand, within PGA1_c13140 at 1359.146 kb on + strand, within PGA1_c13140 at 1359.146 kb on + strand, within PGA1_c13140 at 1359.149 kb on - strand, within PGA1_c13140 at 1359.154 kb on - strand, within PGA1_c13140 at 1359.164 kb on - strand, within PGA1_c13140 at 1359.180 kb on + strand, within PGA1_c13140 at 1359.181 kb on + strand, within PGA1_c13140 at 1359.198 kb on - strand, within PGA1_c13140 at 1359.217 kb on + strand, within PGA1_c13140 at 1359.248 kb on + strand, within PGA1_c13140 at 1359.275 kb on - strand, within PGA1_c13140 at 1359.293 kb on - strand, within PGA1_c13140 at 1359.305 kb on - strand, within PGA1_c13140 at 1359.344 kb on - strand, within PGA1_c13140 at 1359.359 kb on - strand, within PGA1_c13140 at 1359.400 kb on + strand, within PGA1_c13140 at 1359.400 kb on + strand, within PGA1_c13140 at 1359.545 kb on + strand at 1359.549 kb on + strand at 1359.614 kb on - strand at 1359.651 kb on - strand at 1359.656 kb on - strand at 1359.656 kb on - strand at 1359.686 kb on + strand at 1359.686 kb on + strand at 1359.687 kb on + strand at 1359.715 kb on - strand at 1359.822 kb on - strand at 1359.843 kb on + strand at 1359.957 kb on - strand, within PGA1_c13150 at 1359.969 kb on - strand, within PGA1_c13150 at 1360.059 kb on + strand, within PGA1_c13150 at 1360.059 kb on + strand, within PGA1_c13150 at 1360.128 kb on + strand, within PGA1_c13150 at 1360.136 kb on - strand, within PGA1_c13150 at 1360.136 kb on - strand, within PGA1_c13150 at 1360.136 kb on - strand, within PGA1_c13150 at 1360.136 kb on - strand, within PGA1_c13150 at 1360.183 kb on + strand, within PGA1_c13150 at 1360.185 kb on + strand, within PGA1_c13150 at 1360.185 kb on + strand, within PGA1_c13150 at 1360.191 kb on - strand, within PGA1_c13150 at 1360.196 kb on - strand, within PGA1_c13150 at 1360.286 kb on - strand, within PGA1_c13150 at 1360.286 kb on - strand, within PGA1_c13150 at 1360.364 kb on - strand, within PGA1_c13150 at 1360.412 kb on + strand, within PGA1_c13150 at 1360.510 kb on + strand, within PGA1_c13150 at 1360.510 kb on + strand, within PGA1_c13150 at 1360.547 kb on + strand, within PGA1_c13150 at 1360.552 kb on + strand, within PGA1_c13150 at 1360.560 kb on - strand, within PGA1_c13150 at 1360.560 kb on - strand, within PGA1_c13150
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 8 mM remove 1,357,565 + PGA1_c13130 0.36 +0.2 1,357,577 + PGA1_c13130 0.37 +2.2 1,357,585 - PGA1_c13130 0.37 +0.3 1,357,655 + PGA1_c13130 0.42 -0.2 1,357,714 + PGA1_c13130 0.46 +0.3 1,357,886 + PGA1_c13130 0.58 -1.1 1,357,894 - PGA1_c13130 0.58 +0.1 1,358,107 - PGA1_c13130 0.73 -2.0 1,358,313 + PGA1_c13130 0.87 -0.1 1,358,313 + PGA1_c13130 0.87 +0.3 1,358,332 + PGA1_c13130 0.88 -0.2 1,358,361 + -2.9 1,358,372 + -0.3 1,358,397 + -0.5 1,358,453 + -0.5 1,358,590 + -1.5 1,358,590 + -0.5 1,358,590 + +0.9 1,358,590 + +0.4 1,358,598 - -1.6 1,358,611 - -0.7 1,358,629 + +1.5 1,358,674 + PGA1_c13140 0.11 +0.5 1,358,682 - PGA1_c13140 0.12 +0.6 1,358,682 - PGA1_c13140 0.12 +0.0 1,358,684 + PGA1_c13140 0.12 +0.3 1,358,684 + PGA1_c13140 0.12 -0.1 1,358,692 - PGA1_c13140 0.13 -0.2 1,358,692 - PGA1_c13140 0.13 -1.3 1,358,692 - PGA1_c13140 0.13 +0.2 1,358,692 - PGA1_c13140 0.13 -2.3 1,358,692 - PGA1_c13140 0.13 -0.6 1,358,735 + PGA1_c13140 0.17 +0.3 1,358,768 - PGA1_c13140 0.20 +0.5 1,358,840 + PGA1_c13140 0.27 +0.6 1,358,840 + PGA1_c13140 0.27 -0.6 1,358,850 + PGA1_c13140 0.28 +1.4 1,358,853 - PGA1_c13140 0.28 -0.1 1,358,858 - PGA1_c13140 0.29 +0.9 1,358,858 - PGA1_c13140 0.29 +0.2 1,358,863 - PGA1_c13140 0.29 -0.6 1,358,866 + PGA1_c13140 0.29 +0.2 1,358,872 + PGA1_c13140 0.30 +0.4 1,359,065 - PGA1_c13140 0.48 +0.1 1,359,072 - PGA1_c13140 0.49 -0.6 1,359,108 + PGA1_c13140 0.52 +1.0 1,359,128 + PGA1_c13140 0.54 -1.5 1,359,136 - PGA1_c13140 0.55 +0.3 1,359,146 + PGA1_c13140 0.56 +1.2 1,359,146 + PGA1_c13140 0.56 +0.4 1,359,146 + PGA1_c13140 0.56 +0.9 1,359,149 - PGA1_c13140 0.56 +0.8 1,359,154 - PGA1_c13140 0.57 -0.1 1,359,164 - PGA1_c13140 0.58 -0.8 1,359,180 + PGA1_c13140 0.59 -0.4 1,359,181 + PGA1_c13140 0.59 -1.9 1,359,198 - PGA1_c13140 0.61 +1.6 1,359,217 + PGA1_c13140 0.63 +0.5 1,359,248 + PGA1_c13140 0.66 -3.1 1,359,275 - PGA1_c13140 0.68 -2.2 1,359,293 - PGA1_c13140 0.70 -1.3 1,359,305 - PGA1_c13140 0.71 -0.2 1,359,344 - PGA1_c13140 0.75 +1.1 1,359,359 - PGA1_c13140 0.76 -0.2 1,359,400 + PGA1_c13140 0.80 +0.3 1,359,400 + PGA1_c13140 0.80 +0.7 1,359,545 + -2.6 1,359,549 + -1.9 1,359,614 - -0.1 1,359,651 - -1.5 1,359,656 - +1.0 1,359,656 - -0.6 1,359,686 + -0.5 1,359,686 + +0.4 1,359,687 + -2.6 1,359,715 - -0.9 1,359,822 - -0.3 1,359,843 + -0.1 1,359,957 - PGA1_c13150 0.13 +0.1 1,359,969 - PGA1_c13150 0.14 +1.0 1,360,059 + PGA1_c13150 0.19 -1.1 1,360,059 + PGA1_c13150 0.19 -2.7 1,360,128 + PGA1_c13150 0.23 -1.9 1,360,136 - PGA1_c13150 0.23 -0.1 1,360,136 - PGA1_c13150 0.23 +0.5 1,360,136 - PGA1_c13150 0.23 +0.1 1,360,136 - PGA1_c13150 0.23 +0.7 1,360,183 + PGA1_c13150 0.26 -0.2 1,360,185 + PGA1_c13150 0.26 -3.3 1,360,185 + PGA1_c13150 0.26 +1.2 1,360,191 - PGA1_c13150 0.26 -2.2 1,360,196 - PGA1_c13150 0.27 +3.3 1,360,286 - PGA1_c13150 0.32 -0.4 1,360,286 - PGA1_c13150 0.32 +0.7 1,360,364 - PGA1_c13150 0.36 -1.2 1,360,412 + PGA1_c13150 0.39 -1.3 1,360,510 + PGA1_c13150 0.44 +0.4 1,360,510 + PGA1_c13150 0.44 -1.8 1,360,547 + PGA1_c13150 0.46 +1.8 1,360,552 + PGA1_c13150 0.46 -0.2 1,360,560 - PGA1_c13150 0.47 +1.5 1,360,560 - PGA1_c13150 0.47 +0.2
Or see this region's nucleotide sequence