Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c12340

Experiment: m.b. nitrite 8 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. nitrite 8 mM
1,282,213	+		PGA1_c12330	0.67	+0.4
1,282,239	-		PGA1_c12330	0.69	-0.7
1,282,322	-		PGA1_c12330	0.75	-0.4
1,282,516	+		PGA1_c12330	0.89	+0.2
1,282,526	+				+0.5
1,282,534	-				+1.2
1,282,538	+				+3.4
1,282,539	-				+0.2
1,282,577	+				-0.3
1,282,592	-				+3.3
1,282,664	+				+0.7
1,282,741	-				+0.1
1,282,765	-				+1.8
1,282,797	-				-2.9
1,282,797	-				+1.9
1,282,974	-				+1.5
1,282,995	+				-3.2
1,283,006	+				-0.5
1,283,014	-				+0.6
1,283,025	+				-1.0
1,283,035	+				-0.7
1,283,086	-				-0.3
1,283,139	-				+0.0
1,283,302	-		PGA1_c12340	0.22	-1.2
1,283,448	-		PGA1_c12340	0.34	+0.8
1,283,448	-		PGA1_c12340	0.34	+1.7
1,283,510	+		PGA1_c12340	0.39	+0.7
1,283,510	+		PGA1_c12340	0.39	+0.1
1,283,510	-		PGA1_c12340	0.39	+0.7
1,283,544	-		PGA1_c12340	0.42	+2.1
1,283,616	+		PGA1_c12340	0.48	+0.7
1,283,618	-		PGA1_c12340	0.48	+1.4
1,283,648	-		PGA1_c12340	0.50	+2.2
1,283,675	-		PGA1_c12340	0.52	-0.0
1,283,768	-		PGA1_c12340	0.60	-1.1
1,283,817	+		PGA1_c12340	0.64	-0.5
1,283,835	-		PGA1_c12340	0.66	-2.4
1,283,865	+		PGA1_c12340	0.68	+5.2
1,284,071	-		PGA1_c12340	0.85	-1.5
1,284,076	-		PGA1_c12340	0.85	+0.6
1,284,143	+				+0.8
1,284,183	+				-1.8
1,284,183	+				-0.4
1,284,183	+				-1.3
1,284,239	+				-0.3
1,284,239	+				-0.1
1,284,247	-				-0.2
1,284,319	-				+1.1
1,284,319	-				+0.6
1,284,359	-				+1.0
1,284,419	+		PGA1_c12350	0.11	-0.4
1,284,518	+		PGA1_c12350	0.17	-2.2
1,284,526	-		PGA1_c12350	0.17	+2.7
1,284,526	-		PGA1_c12350	0.17	-1.5
1,284,573	-		PGA1_c12350	0.20	+2.5
1,284,625	+		PGA1_c12350	0.23	-2.2
1,284,632	+		PGA1_c12350	0.23	-0.8
1,284,666	+		PGA1_c12350	0.26	+0.3
1,284,666	+		PGA1_c12350	0.26	+0.8
1,284,666	+		PGA1_c12350	0.26	-1.9
1,284,666	+		PGA1_c12350	0.26	-0.4
1,284,666	+		PGA1_c12350	0.26	-1.7
1,284,666	+		PGA1_c12350	0.26	-2.5
1,284,666	+		PGA1_c12350	0.26	+1.0
1,284,674	-		PGA1_c12350	0.26	-0.6
1,284,674	-		PGA1_c12350	0.26	-0.2
1,284,674	-		PGA1_c12350	0.26	-2.1
1,284,674	-		PGA1_c12350	0.26	-2.3
1,284,674	-		PGA1_c12350	0.26	-3.2
1,284,674	-		PGA1_c12350	0.26	+0.3
1,284,674	-		PGA1_c12350	0.26	+0.7
1,284,840	+		PGA1_c12350	0.36	-2.5
1,284,840	+		PGA1_c12350	0.36	+1.1
1,284,972	-		PGA1_c12350	0.44	+1.4
1,285,044	+		PGA1_c12350	0.48	+1.9
1,285,127	-		PGA1_c12350	0.53	+1.4
1,285,171	-		PGA1_c12350	0.56	+0.3