Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c11850

Experiment: m.b. nitrite 8 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. nitrite 8 mM
1,227,403	-		PGA1_c11830	0.39	-0.2
1,227,451	+		PGA1_c11830	0.52	+1.8
1,227,457	-		PGA1_c11830	0.53	-0.5
1,227,463	+		PGA1_c11830	0.55	+0.5
1,227,479	+		PGA1_c11830	0.59	+0.5
1,227,506	+		PGA1_c11830	0.67	+1.2
1,227,506	-		PGA1_c11830	0.67	-1.6
1,227,614	-				-2.2
1,227,645	-				+0.9
1,228,268	+				+1.1
1,228,429	+				+1.6
1,228,453	-		PGA1_c11850	0.11	+1.7
1,228,477	-		PGA1_c11850	0.14	-1.8
1,228,498	-		PGA1_c11850	0.17	-2.5
1,228,503	-		PGA1_c11850	0.18	-0.7
1,228,503	-		PGA1_c11850	0.18	-2.4
1,228,553	+		PGA1_c11850	0.25	-1.8
1,228,610	-		PGA1_c11850	0.34	-1.0
1,228,732	-		PGA1_c11850	0.52	+0.1
1,228,820	-		PGA1_c11850	0.65	-0.8
1,228,820	-		PGA1_c11850	0.65	+0.7
1,228,864	-		PGA1_c11850	0.71	-1.0
1,228,866	+		PGA1_c11850	0.72	+1.4
1,228,879	-		PGA1_c11850	0.73	-1.3
1,228,913	+		PGA1_c11850	0.78	-1.4
1,228,986	-		PGA1_c11850	0.89	-1.5
1,229,037	-				-0.3
1,229,134	-				+0.7
1,229,174	+		PGA1_c11860	0.13	+0.0
1,229,174	+		PGA1_c11860	0.13	-1.5
1,229,182	-		PGA1_c11860	0.16	+0.2
1,229,202	-		PGA1_c11860	0.23	-0.6
1,229,262	+		PGA1_c11860	0.44	-0.5
1,229,262	+		PGA1_c11860	0.44	-3.5
1,229,262	+		PGA1_c11860	0.44	-1.4
1,229,269	+		PGA1_c11860	0.46	-1.6
1,229,270	-		PGA1_c11860	0.47	-0.9
1,229,270	-		PGA1_c11860	0.47	-3.0
1,229,291	+		PGA1_c11860	0.54	-1.7
1,229,296	+		PGA1_c11860	0.56	+1.1
1,229,299	-		PGA1_c11860	0.57	-0.8
1,229,299	-		PGA1_c11860	0.57	+1.2
1,229,299	-		PGA1_c11860	0.57	-0.6
1,229,301	+		PGA1_c11860	0.58	+0.3
1,229,301	+		PGA1_c11860	0.58	+1.6
1,229,301	+		PGA1_c11860	0.58	-2.5
1,229,309	-		PGA1_c11860	0.60	+0.9
1,229,400	+				+0.8
1,229,408	-				-2.6
1,229,409	-				+0.3
1,229,415	+				-1.9
1,229,452	-				-1.0
1,229,506	-				+1.0
1,229,507	-				+1.3
1,229,561	+				-0.1
1,229,582	-				+1.8
1,229,674	-		PGA1_c11870	0.13	+2.3
1,229,682	-		PGA1_c11870	0.14	+1.1
1,229,692	-		PGA1_c11870	0.15	+1.7
1,229,765	+		PGA1_c11870	0.20	-0.0
1,229,765	+		PGA1_c11870	0.20	+3.2
1,229,765	+		PGA1_c11870	0.20	+1.8
1,229,773	-		PGA1_c11870	0.21	+1.7
1,229,773	-		PGA1_c11870	0.21	-0.3
1,229,773	-		PGA1_c11870	0.21	+3.4
1,229,773	-		PGA1_c11870	0.21	+2.2
1,229,773	-		PGA1_c11870	0.21	+0.5
1,229,773	-		PGA1_c11870	0.21	+2.7
1,229,773	-		PGA1_c11870	0.21	+1.0
1,229,773	-		PGA1_c11870	0.21	+1.6
1,229,792	+		PGA1_c11870	0.22	+2.4
1,229,792	+		PGA1_c11870	0.22	+3.2
1,229,807	-		PGA1_c11870	0.24	+2.5
1,229,829	-		PGA1_c11870	0.25	+2.1
1,229,865	+		PGA1_c11870	0.28	+1.8
1,229,873	-		PGA1_c11870	0.29	+4.3
1,229,981	+		PGA1_c11870	0.37	+1.8
1,229,999	-		PGA1_c11870	0.38	+1.7
1,230,001	-		PGA1_c11870	0.38	+1.7