Experiment: m.b. nitrite 8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c10750 and PGA1_c10760 are separated by 136 nucleotides PGA1_c10760 and PGA1_c10770 overlap by 4 nucleotides PGA1_c10770 and PGA1_c10780 are separated by 281 nucleotides
PGA1_c10750: PGA1_c10750 - putative peptidoglycan binding peptidase, at 1,110,958 to 1,112,184
_c10750
PGA1_c10760: PGA1_c10760 - protein-L-isoaspartate O-methyltransferase Pcm, at 1,112,321 to 1,112,968
_c10760
PGA1_c10770: PGA1_c10770 - 5'-nucleotidase SurE, at 1,112,965 to 1,113,747
_c10770
PGA1_c10780: PGA1_c10780 - putative short chain dehydrogenase, at 1,114,029 to 1,114,682
_c10780
Position (kb)
1112
1113
1114 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1112.239 kb on - strand at 1112.291 kb on + strand at 1112.291 kb on + strand at 1112.299 kb on - strand at 1112.306 kb on + strand at 1112.309 kb on - strand at 1112.309 kb on - strand at 1112.314 kb on - strand at 1112.314 kb on - strand at 1112.318 kb on + strand at 1112.318 kb on + strand at 1112.829 kb on - strand, within PGA1_c10760 at 1112.983 kb on - strand at 1113.044 kb on + strand, within PGA1_c10770 at 1113.070 kb on - strand, within PGA1_c10770 at 1113.141 kb on - strand, within PGA1_c10770 at 1113.141 kb on - strand, within PGA1_c10770 at 1113.289 kb on + strand, within PGA1_c10770 at 1113.289 kb on + strand, within PGA1_c10770 at 1113.297 kb on - strand, within PGA1_c10770 at 1113.367 kb on - strand, within PGA1_c10770 at 1113.396 kb on - strand, within PGA1_c10770 at 1113.402 kb on + strand, within PGA1_c10770 at 1113.402 kb on + strand, within PGA1_c10770 at 1113.412 kb on + strand, within PGA1_c10770 at 1113.412 kb on + strand, within PGA1_c10770 at 1113.420 kb on - strand, within PGA1_c10770 at 1113.420 kb on - strand, within PGA1_c10770 at 1113.420 kb on - strand, within PGA1_c10770 at 1113.451 kb on - strand, within PGA1_c10770 at 1113.483 kb on - strand, within PGA1_c10770 at 1113.520 kb on - strand, within PGA1_c10770 at 1113.525 kb on - strand, within PGA1_c10770 at 1113.652 kb on - strand, within PGA1_c10770 at 1113.652 kb on - strand, within PGA1_c10770 at 1113.652 kb on - strand, within PGA1_c10770 at 1113.810 kb on + strand at 1113.868 kb on + strand at 1113.883 kb on + strand at 1113.905 kb on + strand at 1113.913 kb on - strand at 1113.954 kb on + strand at 1113.957 kb on - strand at 1114.720 kb on - strand at 1114.720 kb on - strand at 1114.720 kb on - strand at 1114.720 kb on - strand at 1114.728 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 8 mM remove 1,112,239 - +1.6 1,112,291 + +2.6 1,112,291 + +1.4 1,112,299 - -1.6 1,112,306 + -0.4 1,112,309 - -0.0 1,112,309 - -2.2 1,112,314 - -1.3 1,112,314 - -1.2 1,112,318 + -1.0 1,112,318 + -1.2 1,112,829 - PGA1_c10760 0.78 -1.8 1,112,983 - -0.5 1,113,044 + PGA1_c10770 0.10 +0.1 1,113,070 - PGA1_c10770 0.13 -1.2 1,113,141 - PGA1_c10770 0.22 -0.8 1,113,141 - PGA1_c10770 0.22 +1.5 1,113,289 + PGA1_c10770 0.41 +0.8 1,113,289 + PGA1_c10770 0.41 -0.8 1,113,297 - PGA1_c10770 0.42 +2.4 1,113,367 - PGA1_c10770 0.51 +1.5 1,113,396 - PGA1_c10770 0.55 +0.1 1,113,402 + PGA1_c10770 0.56 -2.5 1,113,402 + PGA1_c10770 0.56 -1.5 1,113,412 + PGA1_c10770 0.57 -0.8 1,113,412 + PGA1_c10770 0.57 -2.7 1,113,420 - PGA1_c10770 0.58 -0.0 1,113,420 - PGA1_c10770 0.58 -1.9 1,113,420 - PGA1_c10770 0.58 -3.1 1,113,451 - PGA1_c10770 0.62 -0.8 1,113,483 - PGA1_c10770 0.66 -1.9 1,113,520 - PGA1_c10770 0.71 -3.1 1,113,525 - PGA1_c10770 0.72 -1.5 1,113,652 - PGA1_c10770 0.88 +0.9 1,113,652 - PGA1_c10770 0.88 -1.4 1,113,652 - PGA1_c10770 0.88 -2.2 1,113,810 + -0.9 1,113,868 + -0.2 1,113,883 + +0.5 1,113,905 + +0.3 1,113,913 - -2.6 1,113,954 + -0.2 1,113,957 - +0.7 1,114,720 - +1.7 1,114,720 - -2.3 1,114,720 - +1.2 1,114,720 - +1.8 1,114,728 - +0.7
Or see this region's nucleotide sequence