Experiment: m.b. nitrite 8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01040 and PGA1_c01050 are separated by 63 nucleotides PGA1_c01050 and PGA1_c01060 overlap by 4 nucleotides PGA1_c01060 and PGA1_c01070 overlap by 4 nucleotides PGA1_c01070 and PGA1_c01080 are separated by 6 nucleotides
PGA1_c01040: PGA1_c01040 - holo-[acyl-carrier-protein] synthase AcpS, at 98,502 to 98,933
_c01040
PGA1_c01050: PGA1_c01050 - putative signal peptidase I, at 98,997 to 99,833
_c01050
PGA1_c01060: PGA1_c01060 - ribonuclease 3, at 99,830 to 100,516
_c01060
PGA1_c01070: PGA1_c01070 - GTP-binding protein Era, at 100,513 to 101,418
_c01070
PGA1_c01080: PGA1_c01080 - Uncharacterized conserved protein, at 101,425 to 101,754
_c01080
Position (kb) 99
100
101 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 98.855 kb on + strand, within PGA1_c01040 at 98.855 kb on + strand, within PGA1_c01040 at 98.855 kb on + strand, within PGA1_c01040 at 98.863 kb on - strand, within PGA1_c01040 at 98.867 kb on + strand, within PGA1_c01040 at 98.875 kb on - strand, within PGA1_c01040 at 99.838 kb on + strand at 99.846 kb on - strand at 99.846 kb on - strand at 99.999 kb on - strand, within PGA1_c01060 at 100.182 kb on - strand, within PGA1_c01060 at 100.198 kb on + strand, within PGA1_c01060 at 100.255 kb on + strand, within PGA1_c01060 at 100.263 kb on - strand, within PGA1_c01060 at 100.300 kb on + strand, within PGA1_c01060 at 100.345 kb on + strand, within PGA1_c01060 at 100.425 kb on + strand, within PGA1_c01060 at 100.425 kb on + strand, within PGA1_c01060 at 101.399 kb on + strand at 101.444 kb on + strand at 101.465 kb on - strand, within PGA1_c01080 at 101.465 kb on - strand, within PGA1_c01080
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 8 mM remove 98,855 + PGA1_c01040 0.82 -0.6 98,855 + PGA1_c01040 0.82 -2.1 98,855 + PGA1_c01040 0.82 +0.9 98,863 - PGA1_c01040 0.84 -2.7 98,867 + PGA1_c01040 0.84 -0.6 98,875 - PGA1_c01040 0.86 +0.8 99,838 + -0.0 99,846 - +1.0 99,846 - -0.6 99,999 - PGA1_c01060 0.25 -0.6 100,182 - PGA1_c01060 0.51 +0.6 100,198 + PGA1_c01060 0.54 -1.6 100,255 + PGA1_c01060 0.62 +2.1 100,263 - PGA1_c01060 0.63 +1.8 100,300 + PGA1_c01060 0.68 +0.8 100,345 + PGA1_c01060 0.75 -2.9 100,425 + PGA1_c01060 0.87 -0.3 100,425 + PGA1_c01060 0.87 -2.2 101,399 + +1.8 101,444 + +2.8 101,465 - PGA1_c01080 0.12 +2.6 101,465 - PGA1_c01080 0.12 +3.3
Or see this region's nucleotide sequence