Experiment: m.b. nitrite 8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01030 and PGA1_c01040 are separated by 59 nucleotides PGA1_c01040 and PGA1_c01050 are separated by 63 nucleotides PGA1_c01050 and PGA1_c01060 overlap by 4 nucleotides PGA1_c01060 and PGA1_c01070 overlap by 4 nucleotides
PGA1_c01030: PGA1_c01030 - pyridoxine 5'-phosphate synthase PdxJ, at 97,681 to 98,442
_c01030
PGA1_c01040: PGA1_c01040 - holo-[acyl-carrier-protein] synthase AcpS, at 98,502 to 98,933
_c01040
PGA1_c01050: PGA1_c01050 - putative signal peptidase I, at 98,997 to 99,833
_c01050
PGA1_c01060: PGA1_c01060 - ribonuclease 3, at 99,830 to 100,516
_c01060
PGA1_c01070: PGA1_c01070 - GTP-binding protein Era, at 100,513 to 101,418
_c01070
Position (kb) 98
99
100 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 98.481 kb on - strand at 98.488 kb on + strand at 98.491 kb on - strand at 98.496 kb on - strand at 98.496 kb on - strand at 98.496 kb on - strand at 98.498 kb on + strand at 98.505 kb on + strand at 98.513 kb on + strand at 98.554 kb on + strand, within PGA1_c01040 at 98.599 kb on + strand, within PGA1_c01040 at 98.607 kb on - strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.609 kb on + strand, within PGA1_c01040 at 98.616 kb on + strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.617 kb on - strand, within PGA1_c01040 at 98.654 kb on + strand, within PGA1_c01040 at 98.685 kb on - strand, within PGA1_c01040 at 98.697 kb on + strand, within PGA1_c01040 at 98.697 kb on + strand, within PGA1_c01040 at 98.800 kb on + strand, within PGA1_c01040 at 98.855 kb on + strand, within PGA1_c01040 at 98.855 kb on + strand, within PGA1_c01040 at 98.855 kb on + strand, within PGA1_c01040 at 98.863 kb on - strand, within PGA1_c01040 at 98.867 kb on + strand, within PGA1_c01040 at 98.875 kb on - strand, within PGA1_c01040 at 99.838 kb on + strand at 99.846 kb on - strand at 99.846 kb on - strand at 99.999 kb on - strand, within PGA1_c01060 at 100.182 kb on - strand, within PGA1_c01060 at 100.198 kb on + strand, within PGA1_c01060 at 100.255 kb on + strand, within PGA1_c01060 at 100.263 kb on - strand, within PGA1_c01060 at 100.300 kb on + strand, within PGA1_c01060 at 100.345 kb on + strand, within PGA1_c01060 at 100.425 kb on + strand, within PGA1_c01060 at 100.425 kb on + strand, within PGA1_c01060
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 8 mM remove 98,481 - +0.6 98,488 + -0.4 98,491 - -2.3 98,496 - +0.3 98,496 - +2.1 98,496 - +0.3 98,498 + -0.3 98,505 + +1.3 98,513 + +0.2 98,554 + PGA1_c01040 0.12 -1.1 98,599 + PGA1_c01040 0.22 -1.2 98,607 - PGA1_c01040 0.24 +1.0 98,609 + PGA1_c01040 0.25 +0.6 98,609 + PGA1_c01040 0.25 -1.5 98,609 + PGA1_c01040 0.25 -0.8 98,609 + PGA1_c01040 0.25 -1.3 98,609 + PGA1_c01040 0.25 -1.8 98,609 + PGA1_c01040 0.25 +0.6 98,609 + PGA1_c01040 0.25 +1.2 98,609 + PGA1_c01040 0.25 -1.6 98,609 + PGA1_c01040 0.25 +0.4 98,609 + PGA1_c01040 0.25 +0.2 98,609 + PGA1_c01040 0.25 +0.2 98,609 + PGA1_c01040 0.25 -0.3 98,609 + PGA1_c01040 0.25 +0.1 98,616 + PGA1_c01040 0.26 +1.2 98,617 - PGA1_c01040 0.27 +1.2 98,617 - PGA1_c01040 0.27 -1.4 98,617 - PGA1_c01040 0.27 +1.7 98,617 - PGA1_c01040 0.27 -1.2 98,617 - PGA1_c01040 0.27 -0.1 98,617 - PGA1_c01040 0.27 -0.0 98,617 - PGA1_c01040 0.27 -0.6 98,617 - PGA1_c01040 0.27 +0.2 98,617 - PGA1_c01040 0.27 -1.0 98,617 - PGA1_c01040 0.27 +0.3 98,617 - PGA1_c01040 0.27 +1.5 98,617 - PGA1_c01040 0.27 -0.9 98,617 - PGA1_c01040 0.27 +0.7 98,617 - PGA1_c01040 0.27 -1.7 98,617 - PGA1_c01040 0.27 -1.8 98,617 - PGA1_c01040 0.27 +0.1 98,617 - PGA1_c01040 0.27 +0.3 98,617 - PGA1_c01040 0.27 -2.7 98,654 + PGA1_c01040 0.35 -1.7 98,685 - PGA1_c01040 0.42 +0.2 98,697 + PGA1_c01040 0.45 +0.4 98,697 + PGA1_c01040 0.45 +1.2 98,800 + PGA1_c01040 0.69 +0.4 98,855 + PGA1_c01040 0.82 -0.6 98,855 + PGA1_c01040 0.82 -2.1 98,855 + PGA1_c01040 0.82 +0.9 98,863 - PGA1_c01040 0.84 -2.7 98,867 + PGA1_c01040 0.84 -0.6 98,875 - PGA1_c01040 0.86 +0.8 99,838 + -0.0 99,846 - +1.0 99,846 - -0.6 99,999 - PGA1_c01060 0.25 -0.6 100,182 - PGA1_c01060 0.51 +0.6 100,198 + PGA1_c01060 0.54 -1.6 100,255 + PGA1_c01060 0.62 +2.1 100,263 - PGA1_c01060 0.63 +1.8 100,300 + PGA1_c01060 0.68 +0.8 100,345 + PGA1_c01060 0.75 -2.9 100,425 + PGA1_c01060 0.87 -0.3 100,425 + PGA1_c01060 0.87 -2.2
Or see this region's nucleotide sequence