Strain Fitness in Shewanella amazonensis SB2B around Sama_2033

Experiment: Zinc 0.3125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_2032 and Sama_2033 are separated by 132 nucleotidesSama_2033 and Sama_2034 overlap by 8 nucleotidesSama_2034 and Sama_2035 are separated by 145 nucleotides Sama_2032: Sama_2032 - chemotaxis protein CheV (RefSeq), at 2,470,301 to 2,471,317 _2032 Sama_2033: Sama_2033 - lipoprotein Blc (RefSeq), at 2,471,450 to 2,471,980 _2033 Sama_2034: Sama_2034 - methyltransferase (RefSeq), at 2,471,973 to 2,472,581 _2034 Sama_2035: Sama_2035 - ATP-dependent protease La (RefSeq), at 2,472,727 to 2,473,281 _2035 Position (kb) 2471 2472Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2470.493 kb on - strand, within Sama_2032at 2470.493 kb on - strand, within Sama_2032at 2470.493 kb on - strand, within Sama_2032at 2470.493 kb on - strand, within Sama_2032at 2470.493 kb on - strand, within Sama_2032at 2470.746 kb on - strand, within Sama_2032at 2470.759 kb on - strand, within Sama_2032at 2470.825 kb on - strand, within Sama_2032at 2470.851 kb on + strand, within Sama_2032at 2470.851 kb on + strand, within Sama_2032at 2470.852 kb on - strand, within Sama_2032at 2470.852 kb on - strand, within Sama_2032at 2470.852 kb on - strand, within Sama_2032at 2470.855 kb on + strand, within Sama_2032at 2470.855 kb on + strand, within Sama_2032at 2470.855 kb on + strand, within Sama_2032at 2470.856 kb on - strand, within Sama_2032at 2470.856 kb on - strand, within Sama_2032at 2470.887 kb on - strand, within Sama_2032at 2470.887 kb on - strand, within Sama_2032at 2470.904 kb on - strand, within Sama_2032at 2470.913 kb on - strand, within Sama_2032at 2470.913 kb on - strand, within Sama_2032at 2470.913 kb on - strand, within Sama_2032at 2470.913 kb on - strand, within Sama_2032at 2470.957 kb on - strand, within Sama_2032at 2470.969 kb on + strand, within Sama_2032at 2470.970 kb on - strand, within Sama_2032at 2471.026 kb on + strand, within Sama_2032at 2471.027 kb on - strand, within Sama_2032at 2471.234 kb on + strandat 2471.283 kb on - strandat 2471.283 kb on - strandat 2471.325 kb on + strandat 2471.326 kb on - strandat 2471.366 kb on - strandat 2471.411 kb on + strandat 2471.412 kb on - strandat 2471.412 kb on - strandat 2471.427 kb on + strandat 2471.434 kb on + strandat 2471.449 kb on + strandat 2471.450 kb on - strandat 2471.489 kb on + strandat 2471.489 kb on + strandat 2471.490 kb on - strandat 2471.544 kb on + strand, within Sama_2033at 2471.545 kb on - strand, within Sama_2033at 2471.552 kb on + strand, within Sama_2033at 2471.553 kb on - strand, within Sama_2033at 2471.607 kb on + strand, within Sama_2033at 2471.627 kb on + strand, within Sama_2033at 2471.648 kb on - strand, within Sama_2033at 2471.648 kb on - strand, within Sama_2033at 2471.649 kb on - strand, within Sama_2033at 2471.655 kb on + strand, within Sama_2033at 2471.655 kb on + strand, within Sama_2033at 2471.658 kb on + strand, within Sama_2033at 2471.771 kb on + strand, within Sama_2033at 2471.780 kb on + strand, within Sama_2033at 2471.855 kb on + strand, within Sama_2033at 2471.855 kb on + strand, within Sama_2033at 2471.911 kb on + strand, within Sama_2033at 2472.075 kb on - strand, within Sama_2034at 2472.188 kb on + strand, within Sama_2034at 2472.189 kb on - strand, within Sama_2034at 2472.498 kb on + strand, within Sama_2034at 2472.499 kb on - strand, within Sama_2034at 2472.548 kb on + strandat 2472.549 kb on - strandat 2472.581 kb on + strandat 2472.582 kb on - strandat 2472.608 kb on + strandat 2472.608 kb on + strandat 2472.686 kb on - strandat 2472.688 kb on + strandat 2472.688 kb on + strandat 2472.688 kb on + strandat 2472.688 kb on + strandat 2472.688 kb on + strandat 2472.689 kb on - strandat 2472.689 kb on - strandat 2472.689 kb on - strandat 2472.689 kb on - strandat 2472.692 kb on + strandat 2472.692 kb on + strandat 2472.692 kb on + strandat 2472.692 kb on + strandat 2472.693 kb on - strandat 2472.693 kb on - strandat 2472.693 kb on - strandat 2472.693 kb on - strandat 2472.727 kb on - strandat 2472.750 kb on - strandat 2472.806 kb on - strand, within Sama_2035at 2472.806 kb on - strand, within Sama_2035at 2472.858 kb on + strand, within Sama_2035at 2472.858 kb on + strand, within Sama_2035at 2472.858 kb on + strand, within Sama_2035at 2472.858 kb on + strand, within Sama_2035at 2472.858 kb on + strand, within Sama_2035at 2472.858 kb on + strand, within Sama_2035at 2472.859 kb on - strand, within Sama_2035at 2472.859 kb on - strand, within Sama_2035at 2472.859 kb on - strand, within Sama_2035at 2472.859 kb on - strand, within Sama_2035at 2472.859 kb on - strand, within Sama_2035at 2472.864 kb on - strand, within Sama_2035at 2472.883 kb on - strand, within Sama_2035at 2472.939 kb on - strand, within Sama_2035at 2472.947 kb on + strand, within Sama_2035at 2472.963 kb on - strand, within Sama_2035

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 0.3125 mM
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2,470,493 - Sama_2032 0.19 +0.9
2,470,493 - Sama_2032 0.19 +1.1
2,470,493 - Sama_2032 0.19 +0.8
2,470,493 - Sama_2032 0.19 -0.3
2,470,493 - Sama_2032 0.19 +0.5
2,470,746 - Sama_2032 0.44 -1.3
2,470,759 - Sama_2032 0.45 -0.9
2,470,825 - Sama_2032 0.52 +0.2
2,470,851 + Sama_2032 0.54 +1.1
2,470,851 + Sama_2032 0.54 +0.1
2,470,852 - Sama_2032 0.54 -0.1
2,470,852 - Sama_2032 0.54 -1.1
2,470,852 - Sama_2032 0.54 +2.1
2,470,855 + Sama_2032 0.54 -0.2
2,470,855 + Sama_2032 0.54 -1.4
2,470,855 + Sama_2032 0.54 -1.5
2,470,856 - Sama_2032 0.55 -0.9
2,470,856 - Sama_2032 0.55 +1.1
2,470,887 - Sama_2032 0.58 -2.0
2,470,887 - Sama_2032 0.58 +0.6
2,470,904 - Sama_2032 0.59 -1.6
2,470,913 - Sama_2032 0.60 +0.3
2,470,913 - Sama_2032 0.60 -1.2
2,470,913 - Sama_2032 0.60 -0.2
2,470,913 - Sama_2032 0.60 +0.7
2,470,957 - Sama_2032 0.65 +1.1
2,470,969 + Sama_2032 0.66 +0.7
2,470,970 - Sama_2032 0.66 +0.8
2,471,026 + Sama_2032 0.71 -0.2
2,471,027 - Sama_2032 0.71 +0.9
2,471,234 + -0.4
2,471,283 - -1.2
2,471,283 - -2.8
2,471,325 + +1.5
2,471,326 - +0.2
2,471,366 - +0.4
2,471,411 + +0.1
2,471,412 - -0.9
2,471,412 - -0.5
2,471,427 + -1.4
2,471,434 + -0.7
2,471,449 + -1.2
2,471,450 - -1.4
2,471,489 + -0.9
2,471,489 + +0.8
2,471,490 - -0.0
2,471,544 + Sama_2033 0.18 +0.9
2,471,545 - Sama_2033 0.18 -0.1
2,471,552 + Sama_2033 0.19 -1.5
2,471,553 - Sama_2033 0.19 +0.1
2,471,607 + Sama_2033 0.30 +0.7
2,471,627 + Sama_2033 0.33 -1.6
2,471,648 - Sama_2033 0.37 -0.6
2,471,648 - Sama_2033 0.37 +0.1
2,471,649 - Sama_2033 0.37 +1.3
2,471,655 + Sama_2033 0.39 +0.8
2,471,655 + Sama_2033 0.39 -0.2
2,471,658 + Sama_2033 0.39 +0.3
2,471,771 + Sama_2033 0.60 +1.3
2,471,780 + Sama_2033 0.62 -0.7
2,471,855 + Sama_2033 0.76 -0.5
2,471,855 + Sama_2033 0.76 -0.5
2,471,911 + Sama_2033 0.87 +0.1
2,472,075 - Sama_2034 0.17 -1.4
2,472,188 + Sama_2034 0.35 -0.8
2,472,189 - Sama_2034 0.35 -1.7
2,472,498 + Sama_2034 0.86 -1.2
2,472,499 - Sama_2034 0.86 +0.0
2,472,548 + -0.1
2,472,549 - -0.4
2,472,581 + +0.6
2,472,582 - +0.1
2,472,608 + -0.9
2,472,608 + +0.1
2,472,686 - -0.8
2,472,688 + +0.8
2,472,688 + -0.6
2,472,688 + +0.5
2,472,688 + +0.5
2,472,688 + +0.1
2,472,689 - +0.3
2,472,689 - -1.2
2,472,689 - +0.3
2,472,689 - +4.4
2,472,692 + -0.1
2,472,692 + -0.4
2,472,692 + -1.5
2,472,692 + +0.1
2,472,693 - +1.7
2,472,693 - +0.0
2,472,693 - +0.9
2,472,693 - -0.5
2,472,727 - -0.5
2,472,750 - -1.2
2,472,806 - Sama_2035 0.14 -0.5
2,472,806 - Sama_2035 0.14 -0.7
2,472,858 + Sama_2035 0.24 -0.4
2,472,858 + Sama_2035 0.24 +2.1
2,472,858 + Sama_2035 0.24 -1.1
2,472,858 + Sama_2035 0.24 +0.3
2,472,858 + Sama_2035 0.24 +0.5
2,472,858 + Sama_2035 0.24 +2.1
2,472,859 - Sama_2035 0.24 +0.9
2,472,859 - Sama_2035 0.24 -0.7
2,472,859 - Sama_2035 0.24 -0.6
2,472,859 - Sama_2035 0.24 -0.1
2,472,859 - Sama_2035 0.24 -2.8
2,472,864 - Sama_2035 0.25 -1.1
2,472,883 - Sama_2035 0.28 +0.1
2,472,939 - Sama_2035 0.38 -0.1
2,472,947 + Sama_2035 0.40 +0.3
2,472,963 - Sama_2035 0.43 +0.3

Or see this region's nucleotide sequence