Strain Fitness in Shewanella amazonensis SB2B

Strain Fitness in Shewanella amazonensis SB2B around Sama_0991

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Zinc 0.3125 mM
				remove
1,197,515	-	Sama_0988	0.84	+0.2
1,197,545	+	Sama_0988	0.87	+0.0
1,197,584	+			-1.1
1,197,584	+			-0.5
1,197,584	+			-1.0
1,197,605	+			-0.4
1,197,605	+			-2.5
1,197,605	+			+0.9
1,197,606	-			+0.2
1,197,614	+			-0.4
1,197,614	+			-0.6
1,197,614	+			-0.3
1,197,615	-			-0.3
1,197,615	-			-0.3
1,197,615	-			+0.9
1,197,632	+			-0.0
1,197,779	+	Sama_0989	0.38	-0.9
1,197,791	+	Sama_0989	0.45	-1.1
1,197,792	-	Sama_0989	0.45	+0.1
1,197,818	+	Sama_0989	0.61	-0.8
1,197,826	-	Sama_0989	0.66	-0.7
1,197,833	+	Sama_0989	0.70	-1.1
1,197,834	-	Sama_0989	0.71	-1.0
1,197,916	-			-1.1
1,197,974	-			-0.8
1,198,019	-			-0.0
1,198,019	-			+0.0
1,198,029	+			-0.8
1,198,029	+			+0.1
1,198,089	+	Sama_0990	0.23	+0.1
1,198,089	+	Sama_0990	0.23	+0.9
1,198,089	+	Sama_0990	0.23	-0.7
1,198,089	+	Sama_0990	0.23	+1.4
1,198,089	+	Sama_0990	0.23	-0.6
1,198,089	+	Sama_0990	0.23	+0.3
1,198,089	+	Sama_0990	0.23	-0.5
1,198,089	+	Sama_0990	0.23	+0.5
1,198,089	+	Sama_0990	0.23	-0.8
1,198,089	+	Sama_0990	0.23	-0.3
1,198,089	+	Sama_0990	0.23	-0.4
1,198,089	+	Sama_0990	0.23	+0.1
1,198,089	+	Sama_0990	0.23	-0.9
1,198,089	+	Sama_0990	0.23	-0.0
1,198,089	+	Sama_0990	0.23	-0.1
1,198,089	+	Sama_0990	0.23	+1.3
1,198,090	-	Sama_0990	0.23	-0.9
1,198,090	-	Sama_0990	0.23	-1.2
1,198,090	-	Sama_0990	0.23	-0.6
1,198,090	-	Sama_0990	0.23	-0.8
1,198,090	-	Sama_0990	0.23	-0.0
1,198,090	-	Sama_0990	0.23	+0.2
1,198,090	-	Sama_0990	0.23	+0.0
1,198,090	-	Sama_0990	0.23	-0.5
1,198,090	-	Sama_0990	0.23	+0.5
1,198,090	-	Sama_0990	0.23	-0.6
1,198,090	-	Sama_0990	0.23	+1.2
1,198,090	-	Sama_0990	0.23	+0.4
1,198,090	-	Sama_0990	0.23	-0.0
1,198,096	+	Sama_0990	0.24	+0.7
1,198,096	+	Sama_0990	0.24	+0.2
1,198,097	-	Sama_0990	0.25	+0.3
1,198,097	-	Sama_0990	0.25	-1.1
1,198,097	-	Sama_0990	0.25	+0.1
1,198,111	-	Sama_0990	0.28	-0.1
1,198,143	+	Sama_0990	0.35	-1.8
1,198,186	-	Sama_0990	0.46	-0.2
1,198,186	-	Sama_0990	0.46	-0.2
1,198,218	+	Sama_0990	0.53	-0.4
1,198,218	+	Sama_0990	0.53	+0.0
1,198,428	+			-0.4
1,198,428	+			-0.5
1,198,429	-			-1.3
1,198,448	+			+0.5
1,198,448	+			+1.0
1,198,448	+			+0.0
1,198,448	+			+0.4
1,198,448	+			+0.1
1,198,448	+			+1.2
1,198,448	+			+0.3
1,198,448	+			-0.5
1,198,448	+			-0.9
1,198,449	-			-0.8
1,198,449	-			-0.4
1,198,449	-			-0.6
1,198,449	-			-0.0
1,198,449	-			+1.0
1,198,449	-			-0.4
1,198,449	-			+0.3
1,198,449	-			-0.8
1,198,449	-			+1.7
1,198,450	+			+0.8
1,198,450	+			+0.2
1,198,451	-			+0.9
1,198,451	-			-0.0
1,198,451	-			-0.5
1,198,490	+			-0.5
1,198,490	+			-0.1
1,198,490	+			+0.4
1,198,491	-			-0.1
1,198,491	-			+0.4
1,198,514	-			+0.6
1,198,614	+			+0.9
1,198,614	+			+1.5
1,198,643	-	Sama_0991	0.11	-0.1
1,198,643	-	Sama_0991	0.11	+0.2
1,198,643	-	Sama_0991	0.11	-0.0
1,198,643	-	Sama_0991	0.11	+1.0
1,198,643	-	Sama_0991	0.11	-0.2
1,198,651	+	Sama_0991	0.11	-1.0
1,198,651	+	Sama_0991	0.11	+0.7
1,198,652	-	Sama_0991	0.11	-0.2
1,198,688	+	Sama_0991	0.13	-0.6
1,198,703	+	Sama_0991	0.14	+1.5
1,198,704	-	Sama_0991	0.14	-0.1
1,198,704	-	Sama_0991	0.14	+0.3
1,198,723	-	Sama_0991	0.15	-1.0
1,198,733	-	Sama_0991	0.16	+1.2
1,198,733	-	Sama_0991	0.16	-0.2
1,198,860	+	Sama_0991	0.23	-2.0
1,198,861	-	Sama_0991	0.23	+0.1
1,198,861	-	Sama_0991	0.23	-2.3
1,198,894	+	Sama_0991	0.25	-0.1
1,198,895	-	Sama_0991	0.25	-0.3
1,198,895	-	Sama_0991	0.25	+0.0
1,198,969	+	Sama_0991	0.29	-0.2
1,198,969	+	Sama_0991	0.29	-1.1
1,198,969	+	Sama_0991	0.29	-0.1
1,199,057	+	Sama_0991	0.34	-0.5
1,199,058	-	Sama_0991	0.34	-1.2
1,199,058	-	Sama_0991	0.34	+0.4
1,199,059	+	Sama_0991	0.34	+0.8
1,199,060	-	Sama_0991	0.35	-0.8
1,199,060	-	Sama_0991	0.35	+0.9
1,199,060	-	Sama_0991	0.35	+1.5
1,199,094	-	Sama_0991	0.36	-0.9
1,199,124	+	Sama_0991	0.38	-0.8
1,199,125	-	Sama_0991	0.38	-0.5
1,199,164	+	Sama_0991	0.40	-0.1
1,199,164	+	Sama_0991	0.40	+0.3
1,199,164	+	Sama_0991	0.40	+0.5
1,199,165	-	Sama_0991	0.40	+1.0
1,199,165	-	Sama_0991	0.40	-0.3
1,199,184	+	Sama_0991	0.42	+0.6
1,199,184	+	Sama_0991	0.42	+1.2
1,199,184	+	Sama_0991	0.42	+1.8
1,199,184	+	Sama_0991	0.42	-0.2
1,199,185	-	Sama_0991	0.42	-1.1
1,199,187	-	Sama_0991	0.42	-0.7
1,199,204	+	Sama_0991	0.43	+0.6
1,199,285	-	Sama_0991	0.47	+0.1
1,199,290	+	Sama_0991	0.48	-1.0
1,199,290	+	Sama_0991	0.48	+0.8
1,199,290	+	Sama_0991	0.48	-0.4
1,199,290	+	Sama_0991	0.48	+0.7
1,199,291	-	Sama_0991	0.48	+0.9
1,199,291	-	Sama_0991	0.48	+0.6
1,199,291	-	Sama_0991	0.48	-0.8
1,199,291	-	Sama_0991	0.48	+1.0
1,199,291	-	Sama_0991	0.48	+0.7
1,199,393	+	Sama_0991	0.53	-0.7
1,199,393	+	Sama_0991	0.53	-0.6
1,199,393	+	Sama_0991	0.53	-1.4
1,199,393	+	Sama_0991	0.53	+0.2
1,199,394	-	Sama_0991	0.53	+0.1
1,199,508	+	Sama_0991	0.60	-0.5
1,199,514	+	Sama_0991	0.60	-1.5
1,199,514	+	Sama_0991	0.60	-2.0
1,199,514	+	Sama_0991	0.60	+1.5
1,199,514	+	Sama_0991	0.60	+0.1
1,199,515	-	Sama_0991	0.60	+0.5
1,199,515	-	Sama_0991	0.60	+0.2
1,199,515	-	Sama_0991	0.60	-1.1
1,199,515	-	Sama_0991	0.60	+0.5
1,199,515	-	Sama_0991	0.60	+0.1
1,199,581	+	Sama_0991	0.64	+0.2
1,199,581	+	Sama_0991	0.64	+0.1
1,199,599	+	Sama_0991	0.65	-1.5
1,199,600	-	Sama_0991	0.65	-0.4
1,199,600	-	Sama_0991	0.65	+0.8
1,199,744	+	Sama_0991	0.73	+0.1
1,199,744	+	Sama_0991	0.73	-0.5
1,199,745	-	Sama_0991	0.73	+0.0
1,199,745	-	Sama_0991	0.73	-0.1
1,199,745	-	Sama_0991	0.73	-0.3
1,199,917	-	Sama_0991	0.83	-1.0
1,199,943	+	Sama_0991	0.85	-0.3
1,199,943	+	Sama_0991	0.85	-0.6
1,199,944	-	Sama_0991	0.85	-1.2
1,199,944	-	Sama_0991	0.85	-0.6
1,199,944	-	Sama_0991	0.85	-0.5
1,199,987	+	Sama_0991	0.87	-1.2
1,199,987	+	Sama_0991	0.87	-0.6
1,199,987	+	Sama_0991	0.87	-0.5
1,199,988	-	Sama_0991	0.87	-0.7
1,199,988	-	Sama_0991	0.87	-0.3
1,199,988	-	Sama_0991	0.87	+1.1
1,199,990	+	Sama_0991	0.87	-0.6
1,199,991	-	Sama_0991	0.87	-1.7
1,199,991	-	Sama_0991	0.87	-0.3
1,200,014	+	Sama_0991	0.89	+1.2
1,200,014	+	Sama_0991	0.89	-0.2
1,200,015	-	Sama_0991	0.89	-2.3
1,200,015	-	Sama_0991	0.89	-1.1
1,200,015	-	Sama_0991	0.89	+1.2
1,200,058	-			-1.4
1,200,058	-			+0.3
1,200,058	-			-0.3
1,200,058	-			+0.4
1,200,068	+			+0.2
1,200,095	+			-0.9
1,200,115	-			+0.2
1,200,115	-			+0.6
1,200,187	-			-0.5
1,200,194	+			+0.6
1,200,195	-			-3.0
1,200,195	-			+0.1
1,200,198	+			-0.0
1,200,198	+			-0.1
1,200,198	+			-0.1
1,200,199	-			-1.0
1,200,199	-			-1.0
1,200,203	+			+0.2
1,200,354	+	Sama_0992	0.15	-2.0
1,200,386	+	Sama_0992	0.19	-0.3
1,200,386	+	Sama_0992	0.19	-2.9
1,200,386	+	Sama_0992	0.19	-1.4
1,200,386	+	Sama_0992	0.19	-0.4
1,200,489	-	Sama_0992	0.31	-0.6
1,200,534	-	Sama_0992	0.36	+0.3
1,200,534	-	Sama_0992	0.36	+1.6
1,200,534	-	Sama_0992	0.36	-1.3
1,200,558	-	Sama_0992	0.39	+0.0
1,200,614	+	Sama_0992	0.46	-0.2
1,200,614	+	Sama_0992	0.46	-0.2
1,200,691	+	Sama_0992	0.55	-1.2
1,200,691	+	Sama_0992	0.55	-0.3
1,200,691	+	Sama_0992	0.55	-1.0
1,200,692	-	Sama_0992	0.55	-0.4
1,200,692	-	Sama_0992	0.55	+0.2
1,200,800	+	Sama_0992	0.68	+0.2
1,200,906	+	Sama_0992	0.80	-0.8
1,200,907	-	Sama_0992	0.80	+0.4
1,200,932	+	Sama_0992	0.83	-0.6
1,200,938	+	Sama_0992	0.84	-0.3
1,200,939	-	Sama_0992	0.84	-0.6
1,200,985	-	Sama_0992	0.89	+0.4
1,200,994	+			-0.9
1,200,994	+			+0.5
1,200,994	+			+0.2
1,200,995	-			-0.0
1,200,995	-			-1.1
1,200,995	-			-0.1
1,200,995	-			+1.0
1,200,995	-			-0.0
1,201,100	+			+0.2
1,201,100	+			-0.8
1,201,100	+			-0.5
1,201,100	+			+0.9
1,201,100	+			+0.7
1,201,101	-			-0.7
1,201,101	-			-0.3
1,201,101	-			-1.1
1,201,101	-			-2.7
1,201,107	+			-0.3
1,201,107	+			-1.1
1,201,107	+			-1.0
1,201,107	+			+0.8
1,201,108	-			-0.1
1,201,108	-			-0.1
1,201,161	+			+0.7
1,201,161	+			-0.4

Or see this region's nucleotide sequence