Experiment: Zinc 0.3125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0590 and Sama_0591 are separated by 223 nucleotides Sama_0591 and Sama_0592 are separated by 235 nucleotides
Sama_0590: Sama_0590 - putative TonB-dependent receptor protein (RefSeq), at 736,305 to 738,518
_0590
Sama_0591: Sama_0591 - hypothetical protein (RefSeq), at 738,742 to 739,443
_0591
Sama_0592: Sama_0592 - smc-like chromosome partitioning protein (DUF3584) <small>(from data)</small>, at 739,679 to 743,359
_0592
Position (kb) 738
739
740 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 737.764 kb on + strand, within Sama_0590 at 737.764 kb on + strand, within Sama_0590 at 737.764 kb on + strand, within Sama_0590 at 737.765 kb on - strand, within Sama_0590 at 737.778 kb on - strand, within Sama_0590 at 737.872 kb on + strand, within Sama_0590 at 737.878 kb on + strand, within Sama_0590 at 737.878 kb on + strand, within Sama_0590 at 737.878 kb on + strand, within Sama_0590 at 737.879 kb on - strand, within Sama_0590 at 737.879 kb on - strand, within Sama_0590 at 737.879 kb on - strand, within Sama_0590 at 737.879 kb on - strand, within Sama_0590 at 737.879 kb on - strand, within Sama_0590 at 737.941 kb on + strand, within Sama_0590 at 737.942 kb on - strand, within Sama_0590 at 738.053 kb on + strand, within Sama_0590 at 738.053 kb on + strand, within Sama_0590 at 738.053 kb on + strand, within Sama_0590 at 738.054 kb on - strand, within Sama_0590 at 738.054 kb on - strand, within Sama_0590 at 738.066 kb on + strand, within Sama_0590 at 738.066 kb on + strand, within Sama_0590 at 738.067 kb on - strand, within Sama_0590 at 738.067 kb on - strand, within Sama_0590 at 738.106 kb on + strand, within Sama_0590 at 738.106 kb on + strand, within Sama_0590 at 738.106 kb on + strand, within Sama_0590 at 738.106 kb on + strand, within Sama_0590 at 738.107 kb on - strand, within Sama_0590 at 738.107 kb on - strand, within Sama_0590 at 738.107 kb on - strand, within Sama_0590 at 738.107 kb on - strand, within Sama_0590 at 738.107 kb on - strand, within Sama_0590 at 738.109 kb on + strand, within Sama_0590 at 738.109 kb on + strand, within Sama_0590 at 738.110 kb on - strand, within Sama_0590 at 738.110 kb on - strand, within Sama_0590 at 738.127 kb on + strand, within Sama_0590 at 738.127 kb on + strand, within Sama_0590 at 738.128 kb on - strand, within Sama_0590 at 738.128 kb on - strand, within Sama_0590 at 738.128 kb on - strand, within Sama_0590 at 738.128 kb on - strand, within Sama_0590 at 738.226 kb on + strand, within Sama_0590 at 738.226 kb on + strand, within Sama_0590 at 738.227 kb on - strand, within Sama_0590 at 738.245 kb on + strand, within Sama_0590 at 738.245 kb on + strand, within Sama_0590 at 738.246 kb on - strand, within Sama_0590 at 738.246 kb on - strand, within Sama_0590 at 738.246 kb on - strand, within Sama_0590 at 738.246 kb on - strand, within Sama_0590 at 738.247 kb on + strand, within Sama_0590 at 738.247 kb on + strand, within Sama_0590 at 738.247 kb on + strand, within Sama_0590 at 738.247 kb on + strand, within Sama_0590 at 738.247 kb on + strand, within Sama_0590 at 738.248 kb on - strand, within Sama_0590 at 738.248 kb on - strand, within Sama_0590 at 738.248 kb on - strand, within Sama_0590 at 738.248 kb on - strand, within Sama_0590 at 738.248 kb on - strand, within Sama_0590 at 738.248 kb on - strand, within Sama_0590 at 738.289 kb on + strand, within Sama_0590 at 738.289 kb on + strand, within Sama_0590 at 738.289 kb on + strand, within Sama_0590 at 738.290 kb on - strand, within Sama_0590 at 738.290 kb on - strand, within Sama_0590 at 738.290 kb on - strand, within Sama_0590 at 738.299 kb on + strand at 738.299 kb on + strand at 738.299 kb on + strand at 738.300 kb on - strand at 738.509 kb on + strand at 738.510 kb on - strand at 738.548 kb on - strand at 738.553 kb on + strand at 738.554 kb on - strand at 738.558 kb on + strand at 738.574 kb on + strand at 738.593 kb on + strand at 738.617 kb on + strand at 738.618 kb on - strand at 738.644 kb on + strand at 738.669 kb on + strand at 738.669 kb on + strand at 738.669 kb on + strand at 738.669 kb on + strand at 738.669 kb on + strand at 738.669 kb on + strand at 738.669 kb on + strand at 738.670 kb on - strand at 738.670 kb on - strand at 738.670 kb on - strand at 738.678 kb on + strand at 738.679 kb on - strand at 738.687 kb on + strand at 738.687 kb on + strand at 738.731 kb on + strand at 738.741 kb on + strand at 738.741 kb on + strand at 738.843 kb on + strand, within Sama_0591 at 738.843 kb on + strand, within Sama_0591 at 738.913 kb on + strand, within Sama_0591 at 738.913 kb on + strand, within Sama_0591 at 738.913 kb on + strand, within Sama_0591 at 738.913 kb on + strand, within Sama_0591 at 738.914 kb on - strand, within Sama_0591 at 738.914 kb on - strand, within Sama_0591 at 738.914 kb on - strand, within Sama_0591 at 738.957 kb on - strand, within Sama_0591 at 739.026 kb on + strand, within Sama_0591 at 739.033 kb on + strand, within Sama_0591 at 739.033 kb on + strand, within Sama_0591 at 739.034 kb on - strand, within Sama_0591 at 739.034 kb on - strand, within Sama_0591 at 739.034 kb on - strand, within Sama_0591 at 739.061 kb on + strand, within Sama_0591 at 739.061 kb on + strand, within Sama_0591 at 739.061 kb on + strand, within Sama_0591 at 739.062 kb on - strand, within Sama_0591 at 739.062 kb on - strand, within Sama_0591 at 739.062 kb on - strand, within Sama_0591 at 739.102 kb on + strand, within Sama_0591 at 739.102 kb on + strand, within Sama_0591 at 739.102 kb on + strand, within Sama_0591 at 739.102 kb on + strand, within Sama_0591 at 739.102 kb on + strand, within Sama_0591 at 739.102 kb on + strand, within Sama_0591 at 739.102 kb on + strand, within Sama_0591 at 739.102 kb on + strand, within Sama_0591 at 739.102 kb on + strand, within Sama_0591 at 739.102 kb on + strand, within Sama_0591 at 739.102 kb on + strand, within Sama_0591 at 739.102 kb on + strand, within Sama_0591 at 739.103 kb on - strand, within Sama_0591 at 739.103 kb on - strand, within Sama_0591 at 739.103 kb on - strand, within Sama_0591 at 739.103 kb on - strand, within Sama_0591 at 739.103 kb on - strand, within Sama_0591 at 739.103 kb on - strand, within Sama_0591 at 739.103 kb on - strand, within Sama_0591 at 739.103 kb on - strand, within Sama_0591 at 739.103 kb on - strand, within Sama_0591 at 739.103 kb on - strand, within Sama_0591 at 739.122 kb on + strand, within Sama_0591 at 739.123 kb on - strand, within Sama_0591 at 739.123 kb on - strand, within Sama_0591 at 739.123 kb on - strand, within Sama_0591 at 739.128 kb on + strand, within Sama_0591 at 739.129 kb on - strand, within Sama_0591 at 739.129 kb on - strand, within Sama_0591 at 739.129 kb on - strand, within Sama_0591 at 739.173 kb on + strand, within Sama_0591 at 739.198 kb on + strand, within Sama_0591 at 739.198 kb on + strand, within Sama_0591 at 739.199 kb on - strand, within Sama_0591 at 739.199 kb on - strand, within Sama_0591 at 739.206 kb on + strand, within Sama_0591 at 739.318 kb on - strand, within Sama_0591 at 739.329 kb on + strand, within Sama_0591 at 739.329 kb on + strand, within Sama_0591 at 739.329 kb on + strand, within Sama_0591 at 739.329 kb on + strand, within Sama_0591 at 739.330 kb on - strand, within Sama_0591 at 739.330 kb on - strand, within Sama_0591 at 739.330 kb on - strand, within Sama_0591 at 739.330 kb on - strand, within Sama_0591 at 739.330 kb on - strand, within Sama_0591 at 739.330 kb on - strand, within Sama_0591 at 739.351 kb on - strand, within Sama_0591 at 739.404 kb on + strand at 739.417 kb on + strand at 739.417 kb on + strand at 739.417 kb on + strand at 739.441 kb on + strand at 739.459 kb on - strand at 739.490 kb on + strand at 739.491 kb on - strand at 739.541 kb on + strand at 739.546 kb on + strand at 739.546 kb on + strand at 739.546 kb on + strand at 739.546 kb on + strand at 739.547 kb on - strand at 739.547 kb on - strand at 739.549 kb on + strand at 739.549 kb on + strand at 739.549 kb on + strand at 739.549 kb on + strand at 739.550 kb on - strand at 739.550 kb on - strand at 739.550 kb on - strand at 739.550 kb on - strand at 739.550 kb on - strand at 739.550 kb on - strand at 739.550 kb on - strand at 739.550 kb on - strand at 739.583 kb on + strand at 739.583 kb on + strand at 739.583 kb on + strand at 739.583 kb on + strand at 739.583 kb on + strand at 739.583 kb on + strand at 739.584 kb on - strand at 739.584 kb on - strand at 739.584 kb on - strand at 739.584 kb on - strand at 739.584 kb on - strand at 739.584 kb on - strand at 739.587 kb on + strand at 739.587 kb on + strand at 739.588 kb on - strand at 739.588 kb on - strand at 739.588 kb on - strand at 739.593 kb on + strand at 739.594 kb on - strand at 739.603 kb on + strand at 739.603 kb on + strand at 739.604 kb on - strand at 739.604 kb on - strand at 739.604 kb on - strand at 739.668 kb on + strand at 739.674 kb on + strand at 739.675 kb on - strand at 739.684 kb on + strand at 739.684 kb on + strand at 739.684 kb on + strand at 739.685 kb on - strand at 739.685 kb on - strand at 739.685 kb on - strand at 739.754 kb on - strand at 739.759 kb on + strand at 739.759 kb on + strand at 739.759 kb on + strand at 739.759 kb on + strand at 739.759 kb on + strand at 739.760 kb on - strand at 739.827 kb on - strand at 739.875 kb on - strand at 739.895 kb on + strand at 739.895 kb on + strand at 739.895 kb on + strand at 739.895 kb on + strand at 739.895 kb on + strand at 739.895 kb on + strand at 739.895 kb on + strand at 739.896 kb on - strand at 739.896 kb on - strand at 739.896 kb on - strand at 739.896 kb on - strand at 739.896 kb on - strand at 739.896 kb on - strand at 739.897 kb on + strand at 739.898 kb on - strand at 739.904 kb on + strand at 739.905 kb on - strand at 739.934 kb on + strand at 739.935 kb on - strand at 739.947 kb on + strand at 739.947 kb on + strand at 739.947 kb on + strand at 739.947 kb on + strand at 739.947 kb on + strand at 739.972 kb on + strand at 739.972 kb on + strand at 740.015 kb on + strand at 740.016 kb on - strand at 740.016 kb on - strand at 740.016 kb on - strand at 740.016 kb on - strand at 740.137 kb on + strand, within Sama_0592 at 740.138 kb on - strand, within Sama_0592 at 740.188 kb on + strand, within Sama_0592 at 740.188 kb on + strand, within Sama_0592 at 740.188 kb on + strand, within Sama_0592 at 740.189 kb on - strand, within Sama_0592 at 740.195 kb on + strand, within Sama_0592 at 740.195 kb on + strand, within Sama_0592 at 740.195 kb on + strand, within Sama_0592 at 740.195 kb on + strand, within Sama_0592 at 740.195 kb on + strand, within Sama_0592 at 740.195 kb on + strand, within Sama_0592 at 740.196 kb on - strand, within Sama_0592 at 740.196 kb on - strand, within Sama_0592 at 740.235 kb on + strand, within Sama_0592 at 740.235 kb on + strand, within Sama_0592 at 740.236 kb on - strand, within Sama_0592 at 740.334 kb on + strand, within Sama_0592 at 740.356 kb on + strand, within Sama_0592 at 740.398 kb on + strand, within Sama_0592 at 740.398 kb on + strand, within Sama_0592 at 740.398 kb on + strand, within Sama_0592 at 740.398 kb on + strand, within Sama_0592
Per-strain Table
Position Strand Gene LocusTag Fraction Zinc 0.3125 mM remove 737,764 + Sama_0590 0.66 -0.4 737,764 + Sama_0590 0.66 -1.1 737,764 + Sama_0590 0.66 -0.6 737,765 - Sama_0590 0.66 +0.1 737,778 - Sama_0590 0.67 -0.6 737,872 + Sama_0590 0.71 +0.0 737,878 + Sama_0590 0.71 +0.8 737,878 + Sama_0590 0.71 -0.1 737,878 + Sama_0590 0.71 -1.2 737,879 - Sama_0590 0.71 -1.9 737,879 - Sama_0590 0.71 +3.4 737,879 - Sama_0590 0.71 +0.5 737,879 - Sama_0590 0.71 -1.5 737,879 - Sama_0590 0.71 -1.4 737,941 + Sama_0590 0.74 +0.6 737,942 - Sama_0590 0.74 -1.2 738,053 + Sama_0590 0.79 -0.3 738,053 + Sama_0590 0.79 -0.6 738,053 + Sama_0590 0.79 -0.4 738,054 - Sama_0590 0.79 +0.1 738,054 - Sama_0590 0.79 -1.5 738,066 + Sama_0590 0.80 -0.3 738,066 + Sama_0590 0.80 +0.3 738,067 - Sama_0590 0.80 +0.2 738,067 - Sama_0590 0.80 +0.1 738,106 + Sama_0590 0.81 +0.1 738,106 + Sama_0590 0.81 -0.5 738,106 + Sama_0590 0.81 -0.4 738,106 + Sama_0590 0.81 +1.4 738,107 - Sama_0590 0.81 -0.2 738,107 - Sama_0590 0.81 -0.3 738,107 - Sama_0590 0.81 -1.6 738,107 - Sama_0590 0.81 +0.0 738,107 - Sama_0590 0.81 -0.4 738,109 + Sama_0590 0.81 +0.6 738,109 + Sama_0590 0.81 +1.2 738,110 - Sama_0590 0.82 -0.8 738,110 - Sama_0590 0.82 +0.4 738,127 + Sama_0590 0.82 -0.4 738,127 + Sama_0590 0.82 -0.2 738,128 - Sama_0590 0.82 -0.2 738,128 - Sama_0590 0.82 -0.4 738,128 - Sama_0590 0.82 -0.8 738,128 - Sama_0590 0.82 -0.3 738,226 + Sama_0590 0.87 -0.3 738,226 + Sama_0590 0.87 -0.8 738,227 - Sama_0590 0.87 -0.4 738,245 + Sama_0590 0.88 +1.2 738,245 + Sama_0590 0.88 +0.9 738,246 - Sama_0590 0.88 -1.2 738,246 - Sama_0590 0.88 -0.3 738,246 - Sama_0590 0.88 -1.9 738,246 - Sama_0590 0.88 -0.7 738,247 + Sama_0590 0.88 -1.6 738,247 + Sama_0590 0.88 +0.8 738,247 + Sama_0590 0.88 -1.2 738,247 + Sama_0590 0.88 +0.6 738,247 + Sama_0590 0.88 +0.5 738,248 - Sama_0590 0.88 +0.4 738,248 - Sama_0590 0.88 -1.8 738,248 - Sama_0590 0.88 -1.1 738,248 - Sama_0590 0.88 +0.5 738,248 - Sama_0590 0.88 -2.0 738,248 - Sama_0590 0.88 -0.2 738,289 + Sama_0590 0.90 +0.2 738,289 + Sama_0590 0.90 -0.5 738,289 + Sama_0590 0.90 -0.1 738,290 - Sama_0590 0.90 -0.4 738,290 - Sama_0590 0.90 -0.7 738,290 - Sama_0590 0.90 +1.4 738,299 + -0.3 738,299 + +1.8 738,299 + -0.0 738,300 - +0.2 738,509 + +0.4 738,510 - -2.2 738,548 - -0.4 738,553 + -1.1 738,554 - -0.9 738,558 + -0.7 738,574 + +0.3 738,593 + +0.4 738,617 + -0.4 738,618 - -1.3 738,644 + -1.1 738,669 + -0.7 738,669 + -0.4 738,669 + +0.1 738,669 + +0.6 738,669 + -1.4 738,669 + +0.3 738,669 + -0.9 738,670 - +0.6 738,670 - -1.3 738,670 - -1.3 738,678 + +0.9 738,679 - -1.4 738,687 + +1.2 738,687 + +0.1 738,731 + -0.4 738,741 + -1.6 738,741 + -1.2 738,843 + Sama_0591 0.14 -1.4 738,843 + Sama_0591 0.14 +0.5 738,913 + Sama_0591 0.24 -0.6 738,913 + Sama_0591 0.24 -1.7 738,913 + Sama_0591 0.24 -0.9 738,913 + Sama_0591 0.24 -0.5 738,914 - Sama_0591 0.25 -1.1 738,914 - Sama_0591 0.25 +1.4 738,914 - Sama_0591 0.25 -1.1 738,957 - Sama_0591 0.31 -0.9 739,026 + Sama_0591 0.40 -0.5 739,033 + Sama_0591 0.41 -1.6 739,033 + Sama_0591 0.41 -0.9 739,034 - Sama_0591 0.42 -1.7 739,034 - Sama_0591 0.42 -1.6 739,034 - Sama_0591 0.42 -0.0 739,061 + Sama_0591 0.45 -1.2 739,061 + Sama_0591 0.45 +0.8 739,061 + Sama_0591 0.45 -0.9 739,062 - Sama_0591 0.46 -0.6 739,062 - Sama_0591 0.46 -3.1 739,062 - Sama_0591 0.46 -2.2 739,102 + Sama_0591 0.51 +0.1 739,102 + Sama_0591 0.51 -0.4 739,102 + Sama_0591 0.51 -1.4 739,102 + Sama_0591 0.51 -0.6 739,102 + Sama_0591 0.51 -0.8 739,102 + Sama_0591 0.51 -0.2 739,102 + Sama_0591 0.51 -1.4 739,102 + Sama_0591 0.51 +2.1 739,102 + Sama_0591 0.51 -1.6 739,102 + Sama_0591 0.51 -0.9 739,102 + Sama_0591 0.51 -1.5 739,102 + Sama_0591 0.51 -1.1 739,103 - Sama_0591 0.51 -0.2 739,103 - Sama_0591 0.51 -0.6 739,103 - Sama_0591 0.51 -1.2 739,103 - Sama_0591 0.51 -0.4 739,103 - Sama_0591 0.51 -0.4 739,103 - Sama_0591 0.51 -1.2 739,103 - Sama_0591 0.51 +1.6 739,103 - Sama_0591 0.51 -0.9 739,103 - Sama_0591 0.51 -0.8 739,103 - Sama_0591 0.51 -1.1 739,122 + Sama_0591 0.54 -1.1 739,123 - Sama_0591 0.54 +0.1 739,123 - Sama_0591 0.54 -1.4 739,123 - Sama_0591 0.54 -0.4 739,128 + Sama_0591 0.55 +0.5 739,129 - Sama_0591 0.55 -1.4 739,129 - Sama_0591 0.55 +0.4 739,129 - Sama_0591 0.55 -0.6 739,173 + Sama_0591 0.61 +0.3 739,198 + Sama_0591 0.65 +0.1 739,198 + Sama_0591 0.65 -1.6 739,199 - Sama_0591 0.65 -1.8 739,199 - Sama_0591 0.65 -1.3 739,206 + Sama_0591 0.66 -0.6 739,318 - Sama_0591 0.82 -1.3 739,329 + Sama_0591 0.84 +0.0 739,329 + Sama_0591 0.84 -0.3 739,329 + Sama_0591 0.84 +0.9 739,329 + Sama_0591 0.84 -0.6 739,330 - Sama_0591 0.84 +0.7 739,330 - Sama_0591 0.84 -0.9 739,330 - Sama_0591 0.84 -0.4 739,330 - Sama_0591 0.84 +0.3 739,330 - Sama_0591 0.84 +0.6 739,330 - Sama_0591 0.84 +1.1 739,351 - Sama_0591 0.87 +0.4 739,404 + +0.6 739,417 + -0.9 739,417 + +1.0 739,417 + -1.4 739,441 + +0.6 739,459 - -0.5 739,490 + +1.1 739,491 - -0.6 739,541 + -0.5 739,546 + +0.2 739,546 + -0.7 739,546 + -1.2 739,546 + -0.4 739,547 - -0.1 739,547 - -2.2 739,549 + +1.4 739,549 + -0.4 739,549 + -1.2 739,549 + +0.2 739,550 - +0.8 739,550 - -1.6 739,550 - -0.1 739,550 - -1.2 739,550 - +0.1 739,550 - -1.5 739,550 - -1.5 739,550 - -0.8 739,583 + -0.6 739,583 + -0.2 739,583 + -0.2 739,583 + -0.7 739,583 + +1.3 739,583 + +0.8 739,584 - +0.5 739,584 - -0.1 739,584 - +0.1 739,584 - -0.1 739,584 - -0.6 739,584 - -0.9 739,587 + +0.5 739,587 + +1.4 739,588 - -0.9 739,588 - -1.2 739,588 - -0.4 739,593 + +0.8 739,594 - -0.8 739,603 + -0.1 739,603 + -0.7 739,604 - -1.2 739,604 - -1.3 739,604 - +0.8 739,668 + +0.3 739,674 + -0.1 739,675 - -1.3 739,684 + -1.1 739,684 + +1.6 739,684 + +0.0 739,685 - -1.0 739,685 - +0.8 739,685 - +1.1 739,754 - -0.6 739,759 + +0.3 739,759 + -0.6 739,759 + +2.0 739,759 + +0.3 739,759 + -0.0 739,760 - -0.6 739,827 - -0.8 739,875 - -0.4 739,895 + -1.2 739,895 + +1.1 739,895 + -1.9 739,895 + +1.4 739,895 + +0.9 739,895 + +0.4 739,895 + +0.3 739,896 - -1.0 739,896 - -0.1 739,896 - -0.8 739,896 - +1.0 739,896 - -1.4 739,896 - -0.8 739,897 + -2.3 739,898 - +0.3 739,904 + +1.0 739,905 - -0.4 739,934 + +0.3 739,935 - -0.4 739,947 + +0.6 739,947 + +0.7 739,947 + -0.2 739,947 + -0.0 739,947 + -0.1 739,972 + +0.2 739,972 + -1.4 740,015 + -0.4 740,016 - +2.0 740,016 - -1.3 740,016 - -1.5 740,016 - -1.0 740,137 + Sama_0592 0.12 +0.7 740,138 - Sama_0592 0.12 -1.0 740,188 + Sama_0592 0.14 -1.3 740,188 + Sama_0592 0.14 -0.2 740,188 + Sama_0592 0.14 -0.9 740,189 - Sama_0592 0.14 -1.3 740,195 + Sama_0592 0.14 -1.2 740,195 + Sama_0592 0.14 +0.1 740,195 + Sama_0592 0.14 -2.4 740,195 + Sama_0592 0.14 +1.0 740,195 + Sama_0592 0.14 -1.6 740,195 + Sama_0592 0.14 +0.5 740,196 - Sama_0592 0.14 +0.6 740,196 - Sama_0592 0.14 +1.1 740,235 + Sama_0592 0.15 -0.0 740,235 + Sama_0592 0.15 +0.2 740,236 - Sama_0592 0.15 -1.3 740,334 + Sama_0592 0.18 -0.2 740,356 + Sama_0592 0.18 -0.2 740,398 + Sama_0592 0.20 -1.4 740,398 + Sama_0592 0.20 -0.6 740,398 + Sama_0592 0.20 -0.0 740,398 + Sama_0592 0.20 -1.4
Or see this region's nucleotide sequence