Experiment: m.b. nitrite 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09200 and PGA1_c09210 are separated by 198 nucleotides PGA1_c09210 and PGA1_c09220 are separated by 392 nucleotides
PGA1_c09200: PGA1_c09200 - putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB, at 944,265 to 945,041
_c09200
PGA1_c09210: PGA1_c09210 - hypothetical protein, at 945,240 to 945,803
_c09210
PGA1_c09220: PGA1_c09220 - Predicted CoA-binding protein, at 946,196 to 946,666
_c09220
Position (kb) 945
946 Strain fitness (log2 ratio) -2
-1
0
1
2 at 944.329 kb on + strand at 944.337 kb on - strand at 944.337 kb on - strand at 944.377 kb on - strand, within PGA1_c09200 at 944.462 kb on - strand, within PGA1_c09200 at 944.537 kb on - strand, within PGA1_c09200 at 944.546 kb on + strand, within PGA1_c09200 at 944.554 kb on - strand, within PGA1_c09200 at 944.619 kb on - strand, within PGA1_c09200 at 944.703 kb on + strand, within PGA1_c09200 at 944.711 kb on - strand, within PGA1_c09200 at 944.711 kb on - strand, within PGA1_c09200 at 944.825 kb on + strand, within PGA1_c09200 at 944.851 kb on + strand, within PGA1_c09200 at 944.859 kb on + strand, within PGA1_c09200 at 944.897 kb on - strand, within PGA1_c09200 at 944.902 kb on - strand, within PGA1_c09200 at 944.910 kb on - strand, within PGA1_c09200 at 944.911 kb on + strand, within PGA1_c09200 at 944.919 kb on - strand, within PGA1_c09200 at 944.924 kb on - strand, within PGA1_c09200 at 944.985 kb on - strand at 945.026 kb on + strand at 945.045 kb on + strand at 945.062 kb on - strand at 945.062 kb on - strand at 945.062 kb on - strand at 945.221 kb on - strand at 945.292 kb on + strand at 945.298 kb on - strand, within PGA1_c09210 at 945.310 kb on - strand, within PGA1_c09210 at 945.320 kb on + strand, within PGA1_c09210 at 945.339 kb on + strand, within PGA1_c09210 at 945.339 kb on + strand, within PGA1_c09210 at 945.339 kb on + strand, within PGA1_c09210 at 945.347 kb on + strand, within PGA1_c09210 at 945.347 kb on - strand, within PGA1_c09210 at 945.347 kb on - strand, within PGA1_c09210 at 945.354 kb on - strand, within PGA1_c09210 at 945.368 kb on - strand, within PGA1_c09210 at 945.549 kb on - strand, within PGA1_c09210 at 945.649 kb on - strand, within PGA1_c09210 at 945.649 kb on - strand, within PGA1_c09210 at 945.701 kb on - strand, within PGA1_c09210 at 945.844 kb on - strand at 945.864 kb on + strand at 945.876 kb on + strand at 945.884 kb on - strand at 946.013 kb on - strand at 946.022 kb on + strand at 946.030 kb on - strand at 946.085 kb on - strand at 946.124 kb on + strand at 946.204 kb on - strand at 946.266 kb on - strand, within PGA1_c09220 at 946.269 kb on + strand, within PGA1_c09220 at 946.329 kb on - strand, within PGA1_c09220 at 946.371 kb on - strand, within PGA1_c09220 at 946.382 kb on + strand, within PGA1_c09220 at 946.451 kb on - strand, within PGA1_c09220 at 946.483 kb on + strand, within PGA1_c09220 at 946.518 kb on + strand, within PGA1_c09220 at 946.518 kb on + strand, within PGA1_c09220 at 946.518 kb on + strand, within PGA1_c09220 at 946.528 kb on + strand, within PGA1_c09220 at 946.546 kb on + strand, within PGA1_c09220 at 946.567 kb on - strand, within PGA1_c09220 at 946.616 kb on + strand, within PGA1_c09220
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 6 mM remove 944,329 + +1.3 944,337 - +2.1 944,337 - +0.5 944,377 - PGA1_c09200 0.14 -0.0 944,462 - PGA1_c09200 0.25 -0.0 944,537 - PGA1_c09200 0.35 -0.5 944,546 + PGA1_c09200 0.36 +1.6 944,554 - PGA1_c09200 0.37 +0.1 944,619 - PGA1_c09200 0.46 -2.0 944,703 + PGA1_c09200 0.56 +1.0 944,711 - PGA1_c09200 0.57 +0.9 944,711 - PGA1_c09200 0.57 +0.4 944,825 + PGA1_c09200 0.72 +0.7 944,851 + PGA1_c09200 0.75 -0.2 944,859 + PGA1_c09200 0.76 +2.2 944,897 - PGA1_c09200 0.81 -1.4 944,902 - PGA1_c09200 0.82 +0.1 944,910 - PGA1_c09200 0.83 -2.6 944,911 + PGA1_c09200 0.83 -0.3 944,919 - PGA1_c09200 0.84 +1.0 944,924 - PGA1_c09200 0.85 +0.1 944,985 - +0.9 945,026 + +0.2 945,045 + +0.7 945,062 - +0.3 945,062 - -0.4 945,062 - -1.9 945,221 - -1.9 945,292 + +1.2 945,298 - PGA1_c09210 0.10 +0.5 945,310 - PGA1_c09210 0.12 +0.9 945,320 + PGA1_c09210 0.14 -0.1 945,339 + PGA1_c09210 0.18 +1.3 945,339 + PGA1_c09210 0.18 +0.7 945,339 + PGA1_c09210 0.18 +0.5 945,347 + PGA1_c09210 0.19 +2.3 945,347 - PGA1_c09210 0.19 -0.7 945,347 - PGA1_c09210 0.19 -0.5 945,354 - PGA1_c09210 0.20 +0.9 945,368 - PGA1_c09210 0.23 +1.1 945,549 - PGA1_c09210 0.55 +1.1 945,649 - PGA1_c09210 0.73 -0.8 945,649 - PGA1_c09210 0.73 +1.4 945,701 - PGA1_c09210 0.82 +0.5 945,844 - +1.7 945,864 + +1.1 945,876 + +0.9 945,884 - -1.9 946,013 - -1.7 946,022 + +0.2 946,030 - +0.6 946,085 - +0.1 946,124 + +0.2 946,204 - +1.8 946,266 - PGA1_c09220 0.15 -0.0 946,269 + PGA1_c09220 0.15 -1.0 946,329 - PGA1_c09220 0.28 -1.1 946,371 - PGA1_c09220 0.37 +1.3 946,382 + PGA1_c09220 0.39 -1.0 946,451 - PGA1_c09220 0.54 +1.4 946,483 + PGA1_c09220 0.61 -2.5 946,518 + PGA1_c09220 0.68 +0.1 946,518 + PGA1_c09220 0.68 +0.0 946,518 + PGA1_c09220 0.68 +1.6 946,528 + PGA1_c09220 0.70 +0.3 946,546 + PGA1_c09220 0.74 +1.7 946,567 - PGA1_c09220 0.79 -1.7 946,616 + PGA1_c09220 0.89 -1.2
Or see this region's nucleotide sequence