Experiment: m.b. nitrite 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08930 and PGA1_c08940 overlap by 4 nucleotides PGA1_c08940 and PGA1_c08950 are separated by 232 nucleotides PGA1_c08950 and PGA1_c08960 are separated by 426 nucleotides PGA1_c08960 and PGA1_c08970 are separated by 19 nucleotides
PGA1_c08930: PGA1_c08930 - 6,7-dimethyl-8-ribityllumazine synthase RibH, at 923,162 to 923,713
_c08930
PGA1_c08940: PGA1_c08940 - N utilization substance protein B homolog, at 923,710 to 924,201
_c08940
PGA1_c08950: PGA1_c08950 - hypothetical protein, at 924,434 to 924,763
_c08950
PGA1_c08960: PGA1_c08960 - DNA repair endonuclease mmcB (DUF1052) <small>(from data)</small>, at 925,190 to 925,645
_c08960
PGA1_c08970: PGA1_c08970 - hypothetical protein, at 925,665 to 925,853
_c08970
Position (kb) 924
925 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 923.442 kb on - strand, within PGA1_c08930 at 923.481 kb on + strand, within PGA1_c08930 at 923.484 kb on + strand, within PGA1_c08930 at 923.488 kb on - strand, within PGA1_c08930 at 924.224 kb on + strand at 924.224 kb on + strand at 924.224 kb on + strand at 924.227 kb on + strand at 924.229 kb on + strand at 924.232 kb on - strand at 924.232 kb on - strand at 924.232 kb on - strand at 924.232 kb on - strand at 924.237 kb on + strand at 924.237 kb on - strand at 924.237 kb on - strand at 924.245 kb on - strand at 924.282 kb on + strand at 924.283 kb on - strand at 924.417 kb on + strand at 924.502 kb on - strand, within PGA1_c08950 at 924.552 kb on - strand, within PGA1_c08950 at 924.581 kb on + strand, within PGA1_c08950 at 924.591 kb on - strand, within PGA1_c08950 at 924.706 kb on + strand, within PGA1_c08950 at 924.947 kb on - strand at 925.023 kb on + strand at 925.137 kb on + strand at 925.202 kb on - strand at 925.206 kb on + strand at 925.214 kb on - strand at 925.248 kb on - strand, within PGA1_c08960 at 925.248 kb on - strand, within PGA1_c08960 at 925.258 kb on - strand, within PGA1_c08960 at 925.321 kb on + strand, within PGA1_c08960 at 925.333 kb on + strand, within PGA1_c08960 at 925.338 kb on + strand, within PGA1_c08960 at 925.346 kb on - strand, within PGA1_c08960 at 925.348 kb on + strand, within PGA1_c08960 at 925.348 kb on + strand, within PGA1_c08960 at 925.393 kb on + strand, within PGA1_c08960 at 925.397 kb on + strand, within PGA1_c08960 at 925.398 kb on + strand, within PGA1_c08960 at 925.401 kb on - strand, within PGA1_c08960 at 925.401 kb on - strand, within PGA1_c08960 at 925.406 kb on - strand, within PGA1_c08960 at 925.433 kb on + strand, within PGA1_c08960 at 925.472 kb on + strand, within PGA1_c08960 at 925.625 kb on + strand at 925.632 kb on - strand at 925.633 kb on - strand at 925.699 kb on + strand, within PGA1_c08970
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 6 mM remove 923,442 - PGA1_c08930 0.51 -2.6 923,481 + PGA1_c08930 0.58 -0.2 923,484 + PGA1_c08930 0.58 -1.4 923,488 - PGA1_c08930 0.59 -2.5 924,224 + +1.0 924,224 + -1.4 924,224 + -0.6 924,227 + +1.1 924,229 + -0.9 924,232 - -0.5 924,232 - +0.5 924,232 - -0.7 924,232 - +2.4 924,237 + +0.9 924,237 - -0.3 924,237 - -1.4 924,245 - -1.4 924,282 + -0.3 924,283 - +1.0 924,417 + +0.7 924,502 - PGA1_c08950 0.21 -1.7 924,552 - PGA1_c08950 0.36 -3.7 924,581 + PGA1_c08950 0.45 -1.3 924,591 - PGA1_c08950 0.48 +0.1 924,706 + PGA1_c08950 0.82 -0.4 924,947 - -0.9 925,023 + -2.6 925,137 + -0.1 925,202 - -0.6 925,206 + +1.9 925,214 - +0.4 925,248 - PGA1_c08960 0.13 -1.7 925,248 - PGA1_c08960 0.13 +0.7 925,258 - PGA1_c08960 0.15 +0.5 925,321 + PGA1_c08960 0.29 +1.2 925,333 + PGA1_c08960 0.31 -1.1 925,338 + PGA1_c08960 0.32 +0.8 925,346 - PGA1_c08960 0.34 +2.4 925,348 + PGA1_c08960 0.35 -2.9 925,348 + PGA1_c08960 0.35 -0.9 925,393 + PGA1_c08960 0.45 -0.5 925,397 + PGA1_c08960 0.45 +0.4 925,398 + PGA1_c08960 0.46 +1.1 925,401 - PGA1_c08960 0.46 -0.7 925,401 - PGA1_c08960 0.46 -0.8 925,406 - PGA1_c08960 0.47 -0.2 925,433 + PGA1_c08960 0.53 -3.1 925,472 + PGA1_c08960 0.62 +1.4 925,625 + -2.0 925,632 - -1.0 925,633 - -0.3 925,699 + PGA1_c08970 0.18 +0.8
Or see this region's nucleotide sequence