Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08930

Experiment: m.b. nitrite 6 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c08920 and PGA1_c08930 are separated by 1 nucleotidesPGA1_c08930 and PGA1_c08940 overlap by 4 nucleotidesPGA1_c08940 and PGA1_c08950 are separated by 232 nucleotides PGA1_c08920: PGA1_c08920 - 3,4-dihydroxy-2-butanone 4-phosphate synthase RibB, at 922,039 to 923,160 _c08920 PGA1_c08930: PGA1_c08930 - 6,7-dimethyl-8-ribityllumazine synthase RibH, at 923,162 to 923,713 _c08930 PGA1_c08940: PGA1_c08940 - N utilization substance protein B homolog, at 923,710 to 924,201 _c08940 PGA1_c08950: PGA1_c08950 - hypothetical protein, at 924,434 to 924,763 _c08950 Position (kb) 923 924Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 922.174 kb on + strand, within PGA1_c08920at 922.243 kb on - strand, within PGA1_c08920at 922.303 kb on + strand, within PGA1_c08920at 922.368 kb on - strand, within PGA1_c08920at 922.401 kb on - strand, within PGA1_c08920at 922.420 kb on - strand, within PGA1_c08920at 922.422 kb on + strand, within PGA1_c08920at 922.556 kb on - strand, within PGA1_c08920at 922.561 kb on - strand, within PGA1_c08920at 922.718 kb on - strand, within PGA1_c08920at 922.826 kb on - strand, within PGA1_c08920at 922.828 kb on + strand, within PGA1_c08920at 922.836 kb on - strand, within PGA1_c08920at 922.836 kb on - strand, within PGA1_c08920at 922.836 kb on - strand, within PGA1_c08920at 922.915 kb on - strand, within PGA1_c08920at 922.915 kb on - strand, within PGA1_c08920at 922.970 kb on - strand, within PGA1_c08920at 922.986 kb on + strand, within PGA1_c08920at 923.006 kb on + strand, within PGA1_c08920at 923.006 kb on + strand, within PGA1_c08920at 923.014 kb on - strand, within PGA1_c08920at 923.014 kb on - strand, within PGA1_c08920at 923.038 kb on - strand, within PGA1_c08920at 923.053 kb on - strandat 923.111 kb on + strandat 923.111 kb on + strandat 923.111 kb on + strandat 923.119 kb on - strandat 923.119 kb on - strandat 923.119 kb on - strandat 923.119 kb on - strandat 923.119 kb on - strandat 923.119 kb on - strandat 923.119 kb on - strandat 923.153 kb on - strandat 923.171 kb on + strandat 923.179 kb on - strandat 923.303 kb on + strand, within PGA1_c08930at 923.318 kb on - strand, within PGA1_c08930at 923.318 kb on - strand, within PGA1_c08930at 923.318 kb on - strand, within PGA1_c08930at 923.337 kb on + strand, within PGA1_c08930at 923.399 kb on + strand, within PGA1_c08930at 923.407 kb on - strand, within PGA1_c08930at 923.407 kb on - strand, within PGA1_c08930at 923.432 kb on - strand, within PGA1_c08930at 923.442 kb on - strand, within PGA1_c08930at 923.481 kb on + strand, within PGA1_c08930at 923.484 kb on + strand, within PGA1_c08930at 923.488 kb on - strand, within PGA1_c08930at 924.224 kb on + strandat 924.224 kb on + strandat 924.224 kb on + strandat 924.227 kb on + strandat 924.229 kb on + strandat 924.232 kb on - strandat 924.232 kb on - strandat 924.232 kb on - strandat 924.232 kb on - strandat 924.237 kb on + strandat 924.237 kb on - strandat 924.237 kb on - strandat 924.245 kb on - strandat 924.282 kb on + strandat 924.283 kb on - strandat 924.417 kb on + strandat 924.502 kb on - strand, within PGA1_c08950at 924.552 kb on - strand, within PGA1_c08950at 924.581 kb on + strand, within PGA1_c08950at 924.591 kb on - strand, within PGA1_c08950at 924.706 kb on + strand, within PGA1_c08950

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 6 mM
remove
922,174 + PGA1_c08920 0.12 -0.1
922,243 - PGA1_c08920 0.18 -1.0
922,303 + PGA1_c08920 0.24 -1.7
922,368 - PGA1_c08920 0.29 -2.0
922,401 - PGA1_c08920 0.32 +0.1
922,420 - PGA1_c08920 0.34 -2.9
922,422 + PGA1_c08920 0.34 -1.6
922,556 - PGA1_c08920 0.46 -1.2
922,561 - PGA1_c08920 0.47 -1.2
922,718 - PGA1_c08920 0.61 +0.3
922,826 - PGA1_c08920 0.70 -1.9
922,828 + PGA1_c08920 0.70 -2.3
922,836 - PGA1_c08920 0.71 -1.1
922,836 - PGA1_c08920 0.71 -1.0
922,836 - PGA1_c08920 0.71 -2.4
922,915 - PGA1_c08920 0.78 -2.0
922,915 - PGA1_c08920 0.78 +1.2
922,970 - PGA1_c08920 0.83 -0.1
922,986 + PGA1_c08920 0.84 -3.7
923,006 + PGA1_c08920 0.86 -2.4
923,006 + PGA1_c08920 0.86 -0.3
923,014 - PGA1_c08920 0.87 -2.9
923,014 - PGA1_c08920 0.87 -0.4
923,038 - PGA1_c08920 0.89 -1.0
923,053 - -0.6
923,111 + -3.8
923,111 + -0.8
923,111 + -0.2
923,119 - -3.6
923,119 - -0.6
923,119 - -4.1
923,119 - -2.3
923,119 - -1.0
923,119 - -1.2
923,119 - -0.3
923,153 - -3.1
923,171 + -2.0
923,179 - -0.1
923,303 + PGA1_c08930 0.26 +1.1
923,318 - PGA1_c08930 0.28 -1.6
923,318 - PGA1_c08930 0.28 -2.5
923,318 - PGA1_c08930 0.28 -3.1
923,337 + PGA1_c08930 0.32 -0.2
923,399 + PGA1_c08930 0.43 -2.4
923,407 - PGA1_c08930 0.44 +1.4
923,407 - PGA1_c08930 0.44 -1.9
923,432 - PGA1_c08930 0.49 -1.1
923,442 - PGA1_c08930 0.51 -2.6
923,481 + PGA1_c08930 0.58 -0.2
923,484 + PGA1_c08930 0.58 -1.4
923,488 - PGA1_c08930 0.59 -2.5
924,224 + +1.0
924,224 + -1.4
924,224 + -0.6
924,227 + +1.1
924,229 + -0.9
924,232 - -0.5
924,232 - +0.5
924,232 - -0.7
924,232 - +2.4
924,237 + +0.9
924,237 - -0.3
924,237 - -1.4
924,245 - -1.4
924,282 + -0.3
924,283 - +1.0
924,417 + +0.7
924,502 - PGA1_c08950 0.21 -1.7
924,552 - PGA1_c08950 0.36 -3.7
924,581 + PGA1_c08950 0.45 -1.3
924,591 - PGA1_c08950 0.48 +0.1
924,706 + PGA1_c08950 0.82 -0.4

Or see this region's nucleotide sequence