Experiment: m.b. nitrite 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08910 and PGA1_c08920 are separated by 355 nucleotides PGA1_c08920 and PGA1_c08930 are separated by 1 nucleotides PGA1_c08930 and PGA1_c08940 overlap by 4 nucleotides
PGA1_c08910: PGA1_c08910 - riboflavin synthase alpha chain, at 921,090 to 921,683
_c08910
PGA1_c08920: PGA1_c08920 - 3,4-dihydroxy-2-butanone 4-phosphate synthase RibB, at 922,039 to 923,160
_c08920
PGA1_c08930: PGA1_c08930 - 6,7-dimethyl-8-ribityllumazine synthase RibH, at 923,162 to 923,713
_c08930
PGA1_c08940: PGA1_c08940 - N utilization substance protein B homolog, at 923,710 to 924,201
_c08940
Position (kb) 922
923
924 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 921.663 kb on - strand at 921.708 kb on + strand at 921.708 kb on + strand at 921.750 kb on + strand at 921.760 kb on - strand at 921.839 kb on - strand at 921.849 kb on - strand at 921.849 kb on - strand at 921.875 kb on - strand at 921.878 kb on - strand at 921.880 kb on - strand at 921.903 kb on + strand at 921.903 kb on + strand at 921.910 kb on + strand at 921.910 kb on + strand at 921.930 kb on + strand at 921.956 kb on - strand at 922.008 kb on + strand at 922.016 kb on - strand at 922.016 kb on - strand at 922.016 kb on - strand at 922.023 kb on + strand at 922.044 kb on + strand at 922.060 kb on - strand at 922.174 kb on + strand, within PGA1_c08920 at 922.243 kb on - strand, within PGA1_c08920 at 922.303 kb on + strand, within PGA1_c08920 at 922.368 kb on - strand, within PGA1_c08920 at 922.401 kb on - strand, within PGA1_c08920 at 922.420 kb on - strand, within PGA1_c08920 at 922.422 kb on + strand, within PGA1_c08920 at 922.556 kb on - strand, within PGA1_c08920 at 922.561 kb on - strand, within PGA1_c08920 at 922.718 kb on - strand, within PGA1_c08920 at 922.826 kb on - strand, within PGA1_c08920 at 922.828 kb on + strand, within PGA1_c08920 at 922.836 kb on - strand, within PGA1_c08920 at 922.836 kb on - strand, within PGA1_c08920 at 922.836 kb on - strand, within PGA1_c08920 at 922.915 kb on - strand, within PGA1_c08920 at 922.915 kb on - strand, within PGA1_c08920 at 922.970 kb on - strand, within PGA1_c08920 at 922.986 kb on + strand, within PGA1_c08920 at 923.006 kb on + strand, within PGA1_c08920 at 923.006 kb on + strand, within PGA1_c08920 at 923.014 kb on - strand, within PGA1_c08920 at 923.014 kb on - strand, within PGA1_c08920 at 923.038 kb on - strand, within PGA1_c08920 at 923.053 kb on - strand at 923.111 kb on + strand at 923.111 kb on + strand at 923.111 kb on + strand at 923.119 kb on - strand at 923.119 kb on - strand at 923.119 kb on - strand at 923.119 kb on - strand at 923.119 kb on - strand at 923.119 kb on - strand at 923.119 kb on - strand at 923.153 kb on - strand at 923.171 kb on + strand at 923.179 kb on - strand at 923.303 kb on + strand, within PGA1_c08930 at 923.318 kb on - strand, within PGA1_c08930 at 923.318 kb on - strand, within PGA1_c08930 at 923.318 kb on - strand, within PGA1_c08930 at 923.337 kb on + strand, within PGA1_c08930 at 923.399 kb on + strand, within PGA1_c08930 at 923.407 kb on - strand, within PGA1_c08930 at 923.407 kb on - strand, within PGA1_c08930 at 923.432 kb on - strand, within PGA1_c08930 at 923.442 kb on - strand, within PGA1_c08930 at 923.481 kb on + strand, within PGA1_c08930 at 923.484 kb on + strand, within PGA1_c08930 at 923.488 kb on - strand, within PGA1_c08930
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 6 mM remove 921,663 - +0.5 921,708 + +0.1 921,708 + -0.0 921,750 + -0.1 921,760 - +0.7 921,839 - -1.0 921,849 - -0.9 921,849 - +0.5 921,875 - -3.1 921,878 - +1.1 921,880 - -0.6 921,903 + +0.6 921,903 + +0.4 921,910 + -0.1 921,910 + +0.7 921,930 + -2.6 921,956 - -0.8 922,008 + -0.7 922,016 - -4.1 922,016 - -2.1 922,016 - -0.4 922,023 + -3.7 922,044 + -2.8 922,060 - -2.3 922,174 + PGA1_c08920 0.12 -0.1 922,243 - PGA1_c08920 0.18 -1.0 922,303 + PGA1_c08920 0.24 -1.7 922,368 - PGA1_c08920 0.29 -2.0 922,401 - PGA1_c08920 0.32 +0.1 922,420 - PGA1_c08920 0.34 -2.9 922,422 + PGA1_c08920 0.34 -1.6 922,556 - PGA1_c08920 0.46 -1.2 922,561 - PGA1_c08920 0.47 -1.2 922,718 - PGA1_c08920 0.61 +0.3 922,826 - PGA1_c08920 0.70 -1.9 922,828 + PGA1_c08920 0.70 -2.3 922,836 - PGA1_c08920 0.71 -1.1 922,836 - PGA1_c08920 0.71 -1.0 922,836 - PGA1_c08920 0.71 -2.4 922,915 - PGA1_c08920 0.78 -2.0 922,915 - PGA1_c08920 0.78 +1.2 922,970 - PGA1_c08920 0.83 -0.1 922,986 + PGA1_c08920 0.84 -3.7 923,006 + PGA1_c08920 0.86 -2.4 923,006 + PGA1_c08920 0.86 -0.3 923,014 - PGA1_c08920 0.87 -2.9 923,014 - PGA1_c08920 0.87 -0.4 923,038 - PGA1_c08920 0.89 -1.0 923,053 - -0.6 923,111 + -3.8 923,111 + -0.8 923,111 + -0.2 923,119 - -3.6 923,119 - -0.6 923,119 - -4.1 923,119 - -2.3 923,119 - -1.0 923,119 - -1.2 923,119 - -0.3 923,153 - -3.1 923,171 + -2.0 923,179 - -0.1 923,303 + PGA1_c08930 0.26 +1.1 923,318 - PGA1_c08930 0.28 -1.6 923,318 - PGA1_c08930 0.28 -2.5 923,318 - PGA1_c08930 0.28 -3.1 923,337 + PGA1_c08930 0.32 -0.2 923,399 + PGA1_c08930 0.43 -2.4 923,407 - PGA1_c08930 0.44 +1.4 923,407 - PGA1_c08930 0.44 -1.9 923,432 - PGA1_c08930 0.49 -1.1 923,442 - PGA1_c08930 0.51 -2.6 923,481 + PGA1_c08930 0.58 -0.2 923,484 + PGA1_c08930 0.58 -1.4 923,488 - PGA1_c08930 0.59 -2.5
Or see this region's nucleotide sequence