Experiment: m.b. nitrite 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08900 and PGA1_c08910 are separated by 245 nucleotides PGA1_c08910 and PGA1_c08920 are separated by 355 nucleotides
PGA1_c08900: PGA1_c08900 - putative capsule polysaccharide export protein KpsS, at 919,552 to 920,844
_c08900
PGA1_c08910: PGA1_c08910 - riboflavin synthase alpha chain, at 921,090 to 921,683
_c08910
PGA1_c08920: PGA1_c08920 - 3,4-dihydroxy-2-butanone 4-phosphate synthase RibB, at 922,039 to 923,160
_c08920
Position (kb) 921
922 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 920.110 kb on + strand, within PGA1_c08900 at 920.112 kb on - strand, within PGA1_c08900 at 920.121 kb on + strand, within PGA1_c08900 at 920.129 kb on - strand, within PGA1_c08900 at 920.306 kb on - strand, within PGA1_c08900 at 920.336 kb on - strand, within PGA1_c08900 at 920.369 kb on - strand, within PGA1_c08900 at 920.374 kb on - strand, within PGA1_c08900 at 920.380 kb on - strand, within PGA1_c08900 at 920.540 kb on - strand, within PGA1_c08900 at 920.562 kb on - strand, within PGA1_c08900 at 920.575 kb on + strand, within PGA1_c08900 at 920.575 kb on + strand, within PGA1_c08900 at 920.583 kb on - strand, within PGA1_c08900 at 920.583 kb on - strand, within PGA1_c08900 at 920.611 kb on + strand, within PGA1_c08900 at 920.632 kb on - strand, within PGA1_c08900 at 920.651 kb on - strand, within PGA1_c08900 at 920.653 kb on + strand, within PGA1_c08900 at 920.656 kb on - strand, within PGA1_c08900 at 920.661 kb on - strand, within PGA1_c08900 at 920.709 kb on + strand, within PGA1_c08900 at 920.731 kb on + strand at 920.766 kb on + strand at 920.784 kb on - strand at 920.790 kb on + strand at 920.823 kb on + strand at 920.875 kb on + strand at 920.886 kb on + strand at 920.914 kb on + strand at 920.914 kb on + strand at 920.914 kb on + strand at 920.919 kb on + strand at 920.922 kb on - strand at 920.922 kb on - strand at 920.922 kb on - strand at 920.927 kb on - strand at 920.927 kb on - strand at 920.927 kb on - strand at 920.942 kb on + strand at 920.945 kb on - strand at 921.663 kb on - strand at 921.708 kb on + strand at 921.708 kb on + strand at 921.750 kb on + strand at 921.760 kb on - strand at 921.839 kb on - strand at 921.849 kb on - strand at 921.849 kb on - strand at 921.875 kb on - strand at 921.878 kb on - strand at 921.880 kb on - strand at 921.903 kb on + strand at 921.903 kb on + strand at 921.910 kb on + strand at 921.910 kb on + strand at 921.930 kb on + strand at 921.956 kb on - strand at 922.008 kb on + strand at 922.016 kb on - strand at 922.016 kb on - strand at 922.016 kb on - strand at 922.023 kb on + strand at 922.044 kb on + strand at 922.060 kb on - strand at 922.174 kb on + strand, within PGA1_c08920 at 922.243 kb on - strand, within PGA1_c08920 at 922.303 kb on + strand, within PGA1_c08920 at 922.368 kb on - strand, within PGA1_c08920 at 922.401 kb on - strand, within PGA1_c08920 at 922.420 kb on - strand, within PGA1_c08920 at 922.422 kb on + strand, within PGA1_c08920 at 922.556 kb on - strand, within PGA1_c08920 at 922.561 kb on - strand, within PGA1_c08920
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 6 mM remove 920,110 + PGA1_c08900 0.43 -1.5 920,112 - PGA1_c08900 0.43 +1.3 920,121 + PGA1_c08900 0.44 -0.7 920,129 - PGA1_c08900 0.45 +0.7 920,306 - PGA1_c08900 0.58 +0.1 920,336 - PGA1_c08900 0.61 -1.8 920,369 - PGA1_c08900 0.63 -0.7 920,374 - PGA1_c08900 0.64 +0.1 920,380 - PGA1_c08900 0.64 +0.7 920,540 - PGA1_c08900 0.76 +0.5 920,562 - PGA1_c08900 0.78 +0.4 920,575 + PGA1_c08900 0.79 +1.0 920,575 + PGA1_c08900 0.79 +1.0 920,583 - PGA1_c08900 0.80 -1.5 920,583 - PGA1_c08900 0.80 -0.5 920,611 + PGA1_c08900 0.82 -0.4 920,632 - PGA1_c08900 0.84 +2.3 920,651 - PGA1_c08900 0.85 -0.6 920,653 + PGA1_c08900 0.85 -0.7 920,656 - PGA1_c08900 0.85 +2.5 920,661 - PGA1_c08900 0.86 +0.1 920,709 + PGA1_c08900 0.89 -0.3 920,731 + +1.4 920,766 + -3.3 920,784 - -0.4 920,790 + -0.4 920,823 + -1.9 920,875 + +0.8 920,886 + -0.1 920,914 + -0.8 920,914 + +0.6 920,914 + -3.6 920,919 + +0.2 920,922 - +1.3 920,922 - -0.9 920,922 - -0.5 920,927 - +0.3 920,927 - -0.5 920,927 - -0.9 920,942 + -1.7 920,945 - -0.3 921,663 - +0.5 921,708 + +0.1 921,708 + -0.0 921,750 + -0.1 921,760 - +0.7 921,839 - -1.0 921,849 - -0.9 921,849 - +0.5 921,875 - -3.1 921,878 - +1.1 921,880 - -0.6 921,903 + +0.6 921,903 + +0.4 921,910 + -0.1 921,910 + +0.7 921,930 + -2.6 921,956 - -0.8 922,008 + -0.7 922,016 - -4.1 922,016 - -2.1 922,016 - -0.4 922,023 + -3.7 922,044 + -2.8 922,060 - -2.3 922,174 + PGA1_c08920 0.12 -0.1 922,243 - PGA1_c08920 0.18 -1.0 922,303 + PGA1_c08920 0.24 -1.7 922,368 - PGA1_c08920 0.29 -2.0 922,401 - PGA1_c08920 0.32 +0.1 922,420 - PGA1_c08920 0.34 -2.9 922,422 + PGA1_c08920 0.34 -1.6 922,556 - PGA1_c08920 0.46 -1.2 922,561 - PGA1_c08920 0.47 -1.2
Or see this region's nucleotide sequence