Experiment: m.b. nitrite 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08890 and PGA1_c08900 are separated by 96 nucleotides PGA1_c08900 and PGA1_c08910 are separated by 245 nucleotides
PGA1_c08890: PGA1_c08890 - putative capsule polysaccharide export outer membrane protein, at 918,319 to 919,455
_c08890
PGA1_c08900: PGA1_c08900 - putative capsule polysaccharide export protein KpsS, at 919,552 to 920,844
_c08900
PGA1_c08910: PGA1_c08910 - riboflavin synthase alpha chain, at 921,090 to 921,683
_c08910
Position (kb) 919
920
921 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 918.607 kb on + strand, within PGA1_c08890 at 918.610 kb on - strand, within PGA1_c08890 at 918.699 kb on + strand, within PGA1_c08890 at 918.712 kb on + strand, within PGA1_c08890 at 918.765 kb on - strand, within PGA1_c08890 at 919.092 kb on + strand, within PGA1_c08890 at 919.095 kb on - strand, within PGA1_c08890 at 919.100 kb on - strand, within PGA1_c08890 at 919.194 kb on - strand, within PGA1_c08890 at 919.220 kb on - strand, within PGA1_c08890 at 919.343 kb on + strand at 919.348 kb on + strand at 919.351 kb on - strand at 919.380 kb on + strand at 919.433 kb on + strand at 919.447 kb on + strand at 919.493 kb on + strand at 919.500 kb on + strand at 919.505 kb on + strand at 919.513 kb on - strand at 919.513 kb on - strand at 919.513 kb on - strand at 919.513 kb on - strand at 919.513 kb on - strand at 919.592 kb on + strand at 919.685 kb on + strand, within PGA1_c08900 at 919.703 kb on - strand, within PGA1_c08900 at 919.713 kb on - strand, within PGA1_c08900 at 919.737 kb on - strand, within PGA1_c08900 at 919.815 kb on - strand, within PGA1_c08900 at 919.950 kb on + strand, within PGA1_c08900 at 919.958 kb on - strand, within PGA1_c08900 at 919.958 kb on - strand, within PGA1_c08900 at 920.051 kb on + strand, within PGA1_c08900 at 920.054 kb on - strand, within PGA1_c08900 at 920.110 kb on + strand, within PGA1_c08900 at 920.112 kb on - strand, within PGA1_c08900 at 920.121 kb on + strand, within PGA1_c08900 at 920.129 kb on - strand, within PGA1_c08900 at 920.306 kb on - strand, within PGA1_c08900 at 920.336 kb on - strand, within PGA1_c08900 at 920.369 kb on - strand, within PGA1_c08900 at 920.374 kb on - strand, within PGA1_c08900 at 920.380 kb on - strand, within PGA1_c08900 at 920.540 kb on - strand, within PGA1_c08900 at 920.562 kb on - strand, within PGA1_c08900 at 920.575 kb on + strand, within PGA1_c08900 at 920.575 kb on + strand, within PGA1_c08900 at 920.583 kb on - strand, within PGA1_c08900 at 920.583 kb on - strand, within PGA1_c08900 at 920.611 kb on + strand, within PGA1_c08900 at 920.632 kb on - strand, within PGA1_c08900 at 920.651 kb on - strand, within PGA1_c08900 at 920.653 kb on + strand, within PGA1_c08900 at 920.656 kb on - strand, within PGA1_c08900 at 920.661 kb on - strand, within PGA1_c08900 at 920.709 kb on + strand, within PGA1_c08900 at 920.731 kb on + strand at 920.766 kb on + strand at 920.784 kb on - strand at 920.790 kb on + strand at 920.823 kb on + strand at 920.875 kb on + strand at 920.886 kb on + strand at 920.914 kb on + strand at 920.914 kb on + strand at 920.914 kb on + strand at 920.919 kb on + strand at 920.922 kb on - strand at 920.922 kb on - strand at 920.922 kb on - strand at 920.927 kb on - strand at 920.927 kb on - strand at 920.927 kb on - strand at 920.942 kb on + strand at 920.945 kb on - strand at 921.663 kb on - strand at 921.708 kb on + strand at 921.708 kb on + strand at 921.750 kb on + strand at 921.760 kb on - strand at 921.839 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 6 mM remove 918,607 + PGA1_c08890 0.25 +0.8 918,610 - PGA1_c08890 0.26 -2.0 918,699 + PGA1_c08890 0.33 +0.6 918,712 + PGA1_c08890 0.35 +0.4 918,765 - PGA1_c08890 0.39 +0.0 919,092 + PGA1_c08890 0.68 -0.6 919,095 - PGA1_c08890 0.68 +0.4 919,100 - PGA1_c08890 0.69 -1.7 919,194 - PGA1_c08890 0.77 +1.1 919,220 - PGA1_c08890 0.79 +2.1 919,343 + -0.4 919,348 + -1.2 919,351 - +1.5 919,380 + +1.1 919,433 + +0.1 919,447 + -1.3 919,493 + +0.5 919,500 + -0.7 919,505 + -3.0 919,513 - +0.5 919,513 - +1.1 919,513 - +0.1 919,513 - -1.3 919,513 - -3.5 919,592 + -3.0 919,685 + PGA1_c08900 0.10 +0.3 919,703 - PGA1_c08900 0.12 -2.1 919,713 - PGA1_c08900 0.12 -1.0 919,737 - PGA1_c08900 0.14 -2.5 919,815 - PGA1_c08900 0.20 -1.5 919,950 + PGA1_c08900 0.31 -0.4 919,958 - PGA1_c08900 0.31 -0.0 919,958 - PGA1_c08900 0.31 -3.2 920,051 + PGA1_c08900 0.39 +0.7 920,054 - PGA1_c08900 0.39 -0.4 920,110 + PGA1_c08900 0.43 -1.5 920,112 - PGA1_c08900 0.43 +1.3 920,121 + PGA1_c08900 0.44 -0.7 920,129 - PGA1_c08900 0.45 +0.7 920,306 - PGA1_c08900 0.58 +0.1 920,336 - PGA1_c08900 0.61 -1.8 920,369 - PGA1_c08900 0.63 -0.7 920,374 - PGA1_c08900 0.64 +0.1 920,380 - PGA1_c08900 0.64 +0.7 920,540 - PGA1_c08900 0.76 +0.5 920,562 - PGA1_c08900 0.78 +0.4 920,575 + PGA1_c08900 0.79 +1.0 920,575 + PGA1_c08900 0.79 +1.0 920,583 - PGA1_c08900 0.80 -1.5 920,583 - PGA1_c08900 0.80 -0.5 920,611 + PGA1_c08900 0.82 -0.4 920,632 - PGA1_c08900 0.84 +2.3 920,651 - PGA1_c08900 0.85 -0.6 920,653 + PGA1_c08900 0.85 -0.7 920,656 - PGA1_c08900 0.85 +2.5 920,661 - PGA1_c08900 0.86 +0.1 920,709 + PGA1_c08900 0.89 -0.3 920,731 + +1.4 920,766 + -3.3 920,784 - -0.4 920,790 + -0.4 920,823 + -1.9 920,875 + +0.8 920,886 + -0.1 920,914 + -0.8 920,914 + +0.6 920,914 + -3.6 920,919 + +0.2 920,922 - +1.3 920,922 - -0.9 920,922 - -0.5 920,927 - +0.3 920,927 - -0.5 920,927 - -0.9 920,942 + -1.7 920,945 - -0.3 921,663 - +0.5 921,708 + +0.1 921,708 + -0.0 921,750 + -0.1 921,760 - +0.7 921,839 - -1.0
Or see this region's nucleotide sequence