Experiment: m.b. nitrite 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00870 and PGA1_c00880 are separated by 75 nucleotides PGA1_c00880 and PGA1_c00890 overlap by 4 nucleotides PGA1_c00890 and PGA1_c00900 are separated by 69 nucleotides PGA1_c00900 and PGA1_c00910 are separated by 12 nucleotides
PGA1_c00870: PGA1_c00870 - peptide deformylase Def, at 86,153 to 86,671
_c00870
PGA1_c00880: PGA1_c00880 - peptide deformylase Def, at 86,747 to 87,256
_c00880
PGA1_c00890: PGA1_c00890 - peptide deformylase Def, at 87,253 to 87,750
_c00890
PGA1_c00900: PGA1_c00900 - methionyl-tRNA formyltransferase Fmt, at 87,820 to 88,725
_c00900
PGA1_c00910: PGA1_c00910 - hypothetical protein, at 88,738 to 88,974
_c00910
Position (kb) 87
88 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 86.628 kb on + strand at 86.696 kb on - strand at 86.705 kb on + strand at 86.711 kb on + strand at 86.711 kb on + strand at 86.711 kb on + strand at 86.711 kb on + strand at 86.713 kb on - strand at 86.720 kb on - strand at 86.791 kb on - strand at 86.889 kb on + strand, within PGA1_c00880 at 86.934 kb on + strand, within PGA1_c00880 at 86.942 kb on - strand, within PGA1_c00880 at 86.957 kb on + strand, within PGA1_c00880 at 86.957 kb on + strand, within PGA1_c00880 at 86.962 kb on + strand, within PGA1_c00880 at 86.965 kb on - strand, within PGA1_c00880 at 86.982 kb on + strand, within PGA1_c00880 at 87.045 kb on + strand, within PGA1_c00880 at 87.045 kb on + strand, within PGA1_c00880 at 87.053 kb on - strand, within PGA1_c00880 at 87.053 kb on - strand, within PGA1_c00880 at 87.117 kb on + strand, within PGA1_c00880 at 87.117 kb on + strand, within PGA1_c00880 at 87.117 kb on + strand, within PGA1_c00880 at 87.117 kb on + strand, within PGA1_c00880 at 87.125 kb on - strand, within PGA1_c00880 at 87.145 kb on - strand, within PGA1_c00880 at 87.162 kb on + strand, within PGA1_c00880 at 87.162 kb on + strand, within PGA1_c00880 at 87.187 kb on - strand, within PGA1_c00880 at 87.189 kb on - strand, within PGA1_c00880 at 87.190 kb on + strand, within PGA1_c00880 at 87.195 kb on + strand, within PGA1_c00880 at 87.203 kb on - strand, within PGA1_c00880 at 87.249 kb on + strand at 87.257 kb on - strand at 87.257 kb on - strand at 87.268 kb on + strand at 87.273 kb on + strand at 87.281 kb on - strand at 87.310 kb on - strand, within PGA1_c00890 at 87.313 kb on - strand, within PGA1_c00890 at 87.341 kb on + strand, within PGA1_c00890 at 87.370 kb on - strand, within PGA1_c00890 at 87.383 kb on + strand, within PGA1_c00890 at 87.395 kb on + strand, within PGA1_c00890 at 87.430 kb on - strand, within PGA1_c00890 at 87.453 kb on + strand, within PGA1_c00890 at 87.463 kb on - strand, within PGA1_c00890 at 87.474 kb on - strand, within PGA1_c00890 at 87.526 kb on + strand, within PGA1_c00890 at 87.527 kb on + strand, within PGA1_c00890 at 87.535 kb on - strand, within PGA1_c00890 at 87.563 kb on - strand, within PGA1_c00890 at 87.592 kb on + strand, within PGA1_c00890 at 87.592 kb on + strand, within PGA1_c00890 at 87.592 kb on + strand, within PGA1_c00890 at 87.610 kb on - strand, within PGA1_c00890 at 87.696 kb on + strand, within PGA1_c00890 at 87.704 kb on - strand at 87.715 kb on + strand at 87.715 kb on + strand at 87.715 kb on + strand at 87.792 kb on + strand at 87.803 kb on + strand at 87.803 kb on + strand at 87.803 kb on + strand at 87.805 kb on + strand at 87.812 kb on + strand at 88.719 kb on + strand at 88.719 kb on - strand at 88.727 kb on + strand at 88.727 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 6 mM remove 86,628 + -2.1 86,696 - -1.7 86,705 + -1.2 86,711 + -1.2 86,711 + -3.8 86,711 + -0.9 86,711 + +0.3 86,713 - -0.2 86,720 - -2.7 86,791 - -1.5 86,889 + PGA1_c00880 0.28 -1.8 86,934 + PGA1_c00880 0.37 -3.4 86,942 - PGA1_c00880 0.38 -0.9 86,957 + PGA1_c00880 0.41 -0.7 86,957 + PGA1_c00880 0.41 -0.9 86,962 + PGA1_c00880 0.42 -2.4 86,965 - PGA1_c00880 0.43 +0.2 86,982 + PGA1_c00880 0.46 -2.7 87,045 + PGA1_c00880 0.58 -1.8 87,045 + PGA1_c00880 0.58 -1.3 87,053 - PGA1_c00880 0.60 -1.8 87,053 - PGA1_c00880 0.60 -3.4 87,117 + PGA1_c00880 0.73 -1.0 87,117 + PGA1_c00880 0.73 -1.5 87,117 + PGA1_c00880 0.73 +0.6 87,117 + PGA1_c00880 0.73 -0.9 87,125 - PGA1_c00880 0.74 -3.1 87,145 - PGA1_c00880 0.78 -2.7 87,162 + PGA1_c00880 0.81 -3.4 87,162 + PGA1_c00880 0.81 -0.4 87,187 - PGA1_c00880 0.86 -1.7 87,189 - PGA1_c00880 0.87 -0.9 87,190 + PGA1_c00880 0.87 +0.0 87,195 + PGA1_c00880 0.88 -1.2 87,203 - PGA1_c00880 0.89 -2.4 87,249 + -3.8 87,257 - -0.9 87,257 - -2.3 87,268 + -2.4 87,273 + -0.6 87,281 - +0.8 87,310 - PGA1_c00890 0.11 -2.8 87,313 - PGA1_c00890 0.12 -2.0 87,341 + PGA1_c00890 0.18 -3.6 87,370 - PGA1_c00890 0.23 +0.4 87,383 + PGA1_c00890 0.26 -1.9 87,395 + PGA1_c00890 0.29 -3.1 87,430 - PGA1_c00890 0.36 -0.9 87,453 + PGA1_c00890 0.40 -2.2 87,463 - PGA1_c00890 0.42 +0.2 87,474 - PGA1_c00890 0.44 -1.0 87,526 + PGA1_c00890 0.55 -1.1 87,527 + PGA1_c00890 0.55 +2.0 87,535 - PGA1_c00890 0.57 -1.0 87,563 - PGA1_c00890 0.62 -1.7 87,592 + PGA1_c00890 0.68 +1.3 87,592 + PGA1_c00890 0.68 -0.3 87,592 + PGA1_c00890 0.68 -2.2 87,610 - PGA1_c00890 0.72 -1.4 87,696 + PGA1_c00890 0.89 -0.7 87,704 - -1.0 87,715 + -1.2 87,715 + -0.9 87,715 + -0.7 87,792 + +0.8 87,803 + +0.4 87,803 + -1.0 87,803 + -1.1 87,805 + -1.1 87,812 + +0.1 88,719 + +0.2 88,719 - -0.9 88,727 + +0.5 88,727 - -0.0
Or see this region's nucleotide sequence