Experiment: m.b. nitrite 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08750 and PGA1_c08755 are separated by 81 nucleotides PGA1_c08755 and PGA1_c08760 overlap by 1 nucleotides PGA1_c08760 and PGA1_c08770 overlap by 8 nucleotides PGA1_c08770 and PGA1_c08780 are separated by 38 nucleotides PGA1_c08780 and PGA1_c08790 are separated by 1 nucleotides
PGA1_c08750: PGA1_c08750 - sarcosine oxidase subunit beta, at 901,787 to 903,040
_c08750
PGA1_c08755: PGA1_c08755 - sarcosine oxidase subunit delta, at 903,122 to 903,382
_c08755
PGA1_c08760: PGA1_c08760 - sarcosine oxidase subunit alpha, at 903,382 to 906,303
_c08760
PGA1_c08770: PGA1_c08770 - putative sarcosine oxidase, subunit gamma, at 906,296 to 906,841
_c08770
PGA1_c08780: PGA1_c08780 - hypothetical protein, at 906,880 to 907,218
_c08780
PGA1_c08790: PGA1_c08790 - DNA primase DnaG, at 907,220 to 909,469
_c08790
Position (kb) 903
904
905
906
907 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 902.394 kb on + strand, within PGA1_c08750 at 902.440 kb on - strand, within PGA1_c08750 at 902.456 kb on + strand, within PGA1_c08750 at 902.456 kb on + strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750 at 902.508 kb on - strand, within PGA1_c08750 at 902.525 kb on + strand, within PGA1_c08750 at 902.525 kb on + strand, within PGA1_c08750 at 902.533 kb on - strand, within PGA1_c08750 at 902.540 kb on + strand, within PGA1_c08750 at 902.577 kb on + strand, within PGA1_c08750 at 902.585 kb on - strand, within PGA1_c08750 at 902.645 kb on - strand, within PGA1_c08750 at 902.670 kb on + strand, within PGA1_c08750 at 902.670 kb on + strand, within PGA1_c08750 at 902.704 kb on - strand, within PGA1_c08750 at 902.856 kb on + strand, within PGA1_c08750 at 902.859 kb on - strand, within PGA1_c08750 at 902.909 kb on - strand, within PGA1_c08750 at 902.911 kb on + strand, within PGA1_c08750 at 902.911 kb on + strand, within PGA1_c08750 at 902.943 kb on - strand at 903.010 kb on + strand at 903.025 kb on + strand at 903.039 kb on + strand at 903.039 kb on + strand at 903.039 kb on + strand at 903.073 kb on + strand at 903.104 kb on + strand at 903.104 kb on + strand at 903.112 kb on - strand at 903.120 kb on - strand at 903.127 kb on - strand at 903.141 kb on + strand at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.221 kb on - strand, within PGA1_c08755 at 903.221 kb on - strand, within PGA1_c08755 at 903.221 kb on - strand, within PGA1_c08755 at 903.221 kb on - strand, within PGA1_c08755 at 903.221 kb on - strand, within PGA1_c08755 at 903.247 kb on + strand, within PGA1_c08755 at 903.301 kb on - strand, within PGA1_c08755 at 903.595 kb on - strand at 903.619 kb on - strand at 903.624 kb on + strand at 903.632 kb on - strand at 903.697 kb on - strand, within PGA1_c08760 at 903.703 kb on + strand, within PGA1_c08760 at 903.754 kb on + strand, within PGA1_c08760 at 903.762 kb on - strand, within PGA1_c08760 at 903.762 kb on - strand, within PGA1_c08760 at 903.764 kb on + strand, within PGA1_c08760 at 903.772 kb on - strand, within PGA1_c08760 at 903.873 kb on - strand, within PGA1_c08760 at 903.873 kb on - strand, within PGA1_c08760 at 903.920 kb on - strand, within PGA1_c08760 at 903.952 kb on + strand, within PGA1_c08760 at 903.957 kb on - strand, within PGA1_c08760 at 904.000 kb on + strand, within PGA1_c08760 at 904.040 kb on - strand, within PGA1_c08760 at 904.057 kb on + strand, within PGA1_c08760 at 904.057 kb on + strand, within PGA1_c08760 at 904.057 kb on + strand, within PGA1_c08760 at 904.057 kb on + strand, within PGA1_c08760 at 904.065 kb on - strand, within PGA1_c08760 at 904.098 kb on - strand, within PGA1_c08760 at 904.189 kb on - strand, within PGA1_c08760 at 904.226 kb on + strand, within PGA1_c08760 at 904.274 kb on + strand, within PGA1_c08760 at 904.278 kb on + strand, within PGA1_c08760 at 904.278 kb on + strand, within PGA1_c08760 at 904.278 kb on + strand, within PGA1_c08760 at 904.278 kb on + strand, within PGA1_c08760 at 904.286 kb on - strand, within PGA1_c08760 at 904.286 kb on - strand, within PGA1_c08760 at 904.339 kb on - strand, within PGA1_c08760 at 904.341 kb on - strand, within PGA1_c08760 at 904.396 kb on - strand, within PGA1_c08760 at 904.404 kb on - strand, within PGA1_c08760 at 904.421 kb on - strand, within PGA1_c08760 at 904.435 kb on + strand, within PGA1_c08760 at 904.440 kb on + strand, within PGA1_c08760 at 904.445 kb on - strand, within PGA1_c08760 at 904.458 kb on + strand, within PGA1_c08760 at 904.466 kb on - strand, within PGA1_c08760 at 904.468 kb on + strand, within PGA1_c08760 at 904.476 kb on - strand, within PGA1_c08760 at 904.476 kb on - strand, within PGA1_c08760 at 904.486 kb on - strand, within PGA1_c08760 at 904.491 kb on - strand, within PGA1_c08760 at 904.491 kb on - strand, within PGA1_c08760 at 904.516 kb on - strand, within PGA1_c08760 at 904.516 kb on - strand, within PGA1_c08760 at 904.573 kb on + strand, within PGA1_c08760 at 904.585 kb on + strand, within PGA1_c08760 at 904.666 kb on + strand, within PGA1_c08760 at 904.754 kb on + strand, within PGA1_c08760 at 904.794 kb on + strand, within PGA1_c08760 at 904.794 kb on + strand, within PGA1_c08760 at 904.802 kb on - strand, within PGA1_c08760 at 904.954 kb on + strand, within PGA1_c08760 at 904.959 kb on + strand, within PGA1_c08760 at 904.967 kb on - strand, within PGA1_c08760 at 905.080 kb on + strand, within PGA1_c08760 at 905.112 kb on + strand, within PGA1_c08760 at 905.120 kb on + strand, within PGA1_c08760 at 905.121 kb on - strand, within PGA1_c08760 at 905.163 kb on + strand, within PGA1_c08760 at 905.163 kb on + strand, within PGA1_c08760 at 905.163 kb on + strand, within PGA1_c08760 at 905.163 kb on + strand, within PGA1_c08760 at 905.163 kb on + strand, within PGA1_c08760 at 905.163 kb on + strand, within PGA1_c08760 at 905.171 kb on - strand, within PGA1_c08760 at 905.171 kb on - strand, within PGA1_c08760 at 905.171 kb on - strand, within PGA1_c08760 at 905.194 kb on - strand, within PGA1_c08760 at 905.194 kb on - strand, within PGA1_c08760 at 905.244 kb on + strand, within PGA1_c08760 at 905.250 kb on - strand, within PGA1_c08760 at 905.299 kb on + strand, within PGA1_c08760 at 905.318 kb on - strand, within PGA1_c08760 at 905.382 kb on + strand, within PGA1_c08760 at 905.382 kb on + strand, within PGA1_c08760 at 905.382 kb on + strand, within PGA1_c08760 at 905.382 kb on + strand, within PGA1_c08760 at 905.382 kb on + strand, within PGA1_c08760 at 905.382 kb on + strand, within PGA1_c08760 at 905.390 kb on - strand, within PGA1_c08760 at 905.390 kb on - strand, within PGA1_c08760 at 905.448 kb on - strand, within PGA1_c08760 at 905.453 kb on + strand, within PGA1_c08760 at 905.484 kb on + strand, within PGA1_c08760 at 905.507 kb on + strand, within PGA1_c08760 at 905.521 kb on + strand, within PGA1_c08760 at 905.620 kb on - strand, within PGA1_c08760 at 905.631 kb on + strand, within PGA1_c08760 at 905.631 kb on + strand, within PGA1_c08760 at 905.631 kb on + strand, within PGA1_c08760 at 905.631 kb on + strand, within PGA1_c08760 at 905.639 kb on - strand, within PGA1_c08760 at 905.639 kb on - strand, within PGA1_c08760 at 905.711 kb on - strand, within PGA1_c08760 at 905.753 kb on + strand, within PGA1_c08760 at 905.814 kb on + strand, within PGA1_c08760 at 905.821 kb on + strand, within PGA1_c08760 at 905.821 kb on + strand, within PGA1_c08760 at 905.829 kb on - strand, within PGA1_c08760 at 905.843 kb on + strand, within PGA1_c08760 at 905.843 kb on + strand, within PGA1_c08760 at 905.931 kb on - strand, within PGA1_c08760 at 905.953 kb on + strand, within PGA1_c08760 at 905.957 kb on + strand, within PGA1_c08760 at 905.958 kb on + strand, within PGA1_c08760 at 905.961 kb on - strand, within PGA1_c08760 at 906.035 kb on - strand at 906.059 kb on - strand at 906.109 kb on + strand at 906.140 kb on + strand at 906.172 kb on - strand at 906.174 kb on + strand at 906.174 kb on + strand at 906.174 kb on + strand at 906.174 kb on + strand at 906.174 kb on + strand at 906.174 kb on + strand at 906.174 kb on + strand at 906.174 kb on + strand at 906.182 kb on - strand at 906.182 kb on - strand at 906.182 kb on - strand at 906.182 kb on - strand at 906.182 kb on - strand at 906.182 kb on - strand at 906.182 kb on - strand at 906.182 kb on - strand at 906.182 kb on - strand at 906.194 kb on + strand at 906.219 kb on + strand at 906.223 kb on - strand at 906.225 kb on - strand at 906.240 kb on - strand at 906.269 kb on + strand at 906.436 kb on + strand, within PGA1_c08770 at 906.452 kb on + strand, within PGA1_c08770 at 906.522 kb on + strand, within PGA1_c08770 at 906.530 kb on - strand, within PGA1_c08770 at 906.551 kb on + strand, within PGA1_c08770 at 906.555 kb on - strand, within PGA1_c08770 at 906.570 kb on + strand, within PGA1_c08770 at 906.613 kb on + strand, within PGA1_c08770 at 906.623 kb on + strand, within PGA1_c08770 at 906.630 kb on + strand, within PGA1_c08770 at 906.679 kb on + strand, within PGA1_c08770 at 906.688 kb on + strand, within PGA1_c08770 at 906.886 kb on - strand at 906.887 kb on + strand at 906.969 kb on + strand, within PGA1_c08780 at 907.060 kb on + strand, within PGA1_c08780
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 6 mM remove 902,394 + PGA1_c08750 0.48 -2.3 902,440 - PGA1_c08750 0.52 -2.0 902,456 + PGA1_c08750 0.53 -1.6 902,456 + PGA1_c08750 0.53 -1.2 902,464 - PGA1_c08750 0.54 -0.1 902,464 - PGA1_c08750 0.54 -1.4 902,464 - PGA1_c08750 0.54 +1.8 902,464 - PGA1_c08750 0.54 -0.0 902,464 - PGA1_c08750 0.54 +0.6 902,464 - PGA1_c08750 0.54 -0.7 902,508 - PGA1_c08750 0.57 +0.7 902,525 + PGA1_c08750 0.59 +0.7 902,525 + PGA1_c08750 0.59 +0.4 902,533 - PGA1_c08750 0.59 -3.4 902,540 + PGA1_c08750 0.60 -0.6 902,577 + PGA1_c08750 0.63 +0.0 902,585 - PGA1_c08750 0.64 +0.1 902,645 - PGA1_c08750 0.68 -2.3 902,670 + PGA1_c08750 0.70 -0.6 902,670 + PGA1_c08750 0.70 -2.3 902,704 - PGA1_c08750 0.73 -3.0 902,856 + PGA1_c08750 0.85 -0.2 902,859 - PGA1_c08750 0.85 -2.9 902,909 - PGA1_c08750 0.89 -0.9 902,911 + PGA1_c08750 0.90 +0.1 902,911 + PGA1_c08750 0.90 +2.0 902,943 - +0.8 903,010 + +0.6 903,025 + +0.7 903,039 + +1.1 903,039 + +1.0 903,039 + +2.4 903,073 + +1.0 903,104 + -0.9 903,104 + +1.3 903,112 - +1.4 903,120 - -1.0 903,127 - -1.2 903,141 + -1.4 903,213 + PGA1_c08755 0.35 -2.1 903,213 + PGA1_c08755 0.35 +0.3 903,213 + PGA1_c08755 0.35 +0.8 903,213 + PGA1_c08755 0.35 +1.5 903,213 + PGA1_c08755 0.35 +0.4 903,213 + PGA1_c08755 0.35 -1.1 903,213 + PGA1_c08755 0.35 -0.6 903,213 + PGA1_c08755 0.35 -2.6 903,213 + PGA1_c08755 0.35 -0.5 903,213 + PGA1_c08755 0.35 +0.1 903,221 - PGA1_c08755 0.38 -2.1 903,221 - PGA1_c08755 0.38 +0.1 903,221 - PGA1_c08755 0.38 -0.0 903,221 - PGA1_c08755 0.38 -1.3 903,221 - PGA1_c08755 0.38 -1.6 903,247 + PGA1_c08755 0.48 -1.2 903,301 - PGA1_c08755 0.69 +1.8 903,595 - -1.1 903,619 - -1.4 903,624 + -0.5 903,632 - +1.1 903,697 - PGA1_c08760 0.11 -0.3 903,703 + PGA1_c08760 0.11 +1.0 903,754 + PGA1_c08760 0.13 +0.1 903,762 - PGA1_c08760 0.13 -0.4 903,762 - PGA1_c08760 0.13 -0.4 903,764 + PGA1_c08760 0.13 -1.3 903,772 - PGA1_c08760 0.13 +2.0 903,873 - PGA1_c08760 0.17 +1.4 903,873 - PGA1_c08760 0.17 +1.4 903,920 - PGA1_c08760 0.18 -1.2 903,952 + PGA1_c08760 0.20 +1.8 903,957 - PGA1_c08760 0.20 -1.4 904,000 + PGA1_c08760 0.21 -0.6 904,040 - PGA1_c08760 0.23 -0.6 904,057 + PGA1_c08760 0.23 +1.1 904,057 + PGA1_c08760 0.23 +1.5 904,057 + PGA1_c08760 0.23 +1.1 904,057 + PGA1_c08760 0.23 -0.2 904,065 - PGA1_c08760 0.23 +0.3 904,098 - PGA1_c08760 0.25 +0.1 904,189 - PGA1_c08760 0.28 -1.1 904,226 + PGA1_c08760 0.29 -2.3 904,274 + PGA1_c08760 0.31 -1.9 904,278 + PGA1_c08760 0.31 +4.3 904,278 + PGA1_c08760 0.31 +0.2 904,278 + PGA1_c08760 0.31 +0.9 904,278 + PGA1_c08760 0.31 -1.6 904,286 - PGA1_c08760 0.31 +0.2 904,286 - PGA1_c08760 0.31 -0.4 904,339 - PGA1_c08760 0.33 +1.9 904,341 - PGA1_c08760 0.33 -2.2 904,396 - PGA1_c08760 0.35 -1.8 904,404 - PGA1_c08760 0.35 +0.7 904,421 - PGA1_c08760 0.36 -0.8 904,435 + PGA1_c08760 0.36 +0.2 904,440 + PGA1_c08760 0.36 -2.6 904,445 - PGA1_c08760 0.36 -0.8 904,458 + PGA1_c08760 0.37 -0.5 904,466 - PGA1_c08760 0.37 +0.4 904,468 + PGA1_c08760 0.37 +1.1 904,476 - PGA1_c08760 0.37 +0.8 904,476 - PGA1_c08760 0.37 -0.7 904,486 - PGA1_c08760 0.38 +0.4 904,491 - PGA1_c08760 0.38 +0.4 904,491 - PGA1_c08760 0.38 +0.7 904,516 - PGA1_c08760 0.39 -1.2 904,516 - PGA1_c08760 0.39 -2.4 904,573 + PGA1_c08760 0.41 -1.9 904,585 + PGA1_c08760 0.41 -1.3 904,666 + PGA1_c08760 0.44 -0.9 904,754 + PGA1_c08760 0.47 -0.3 904,794 + PGA1_c08760 0.48 +0.6 904,794 + PGA1_c08760 0.48 +0.4 904,802 - PGA1_c08760 0.49 -0.4 904,954 + PGA1_c08760 0.54 -0.9 904,959 + PGA1_c08760 0.54 -0.2 904,967 - PGA1_c08760 0.54 +3.1 905,080 + PGA1_c08760 0.58 -0.6 905,112 + PGA1_c08760 0.59 -0.4 905,120 + PGA1_c08760 0.59 +1.0 905,121 - PGA1_c08760 0.60 +0.0 905,163 + PGA1_c08760 0.61 -0.2 905,163 + PGA1_c08760 0.61 +1.1 905,163 + PGA1_c08760 0.61 +0.1 905,163 + PGA1_c08760 0.61 +1.0 905,163 + PGA1_c08760 0.61 -0.7 905,163 + PGA1_c08760 0.61 -0.4 905,171 - PGA1_c08760 0.61 -0.9 905,171 - PGA1_c08760 0.61 +0.5 905,171 - PGA1_c08760 0.61 -0.4 905,194 - PGA1_c08760 0.62 -0.2 905,194 - PGA1_c08760 0.62 -0.7 905,244 + PGA1_c08760 0.64 +0.2 905,250 - PGA1_c08760 0.64 +1.0 905,299 + PGA1_c08760 0.66 +0.9 905,318 - PGA1_c08760 0.66 -2.7 905,382 + PGA1_c08760 0.68 -0.5 905,382 + PGA1_c08760 0.68 +0.3 905,382 + PGA1_c08760 0.68 +0.6 905,382 + PGA1_c08760 0.68 -0.3 905,382 + PGA1_c08760 0.68 +1.1 905,382 + PGA1_c08760 0.68 -0.8 905,390 - PGA1_c08760 0.69 +0.0 905,390 - PGA1_c08760 0.69 +2.4 905,448 - PGA1_c08760 0.71 -1.2 905,453 + PGA1_c08760 0.71 -2.3 905,484 + PGA1_c08760 0.72 +0.7 905,507 + PGA1_c08760 0.73 -3.1 905,521 + PGA1_c08760 0.73 -0.7 905,620 - PGA1_c08760 0.77 -0.4 905,631 + PGA1_c08760 0.77 -0.9 905,631 + PGA1_c08760 0.77 -0.4 905,631 + PGA1_c08760 0.77 +1.7 905,631 + PGA1_c08760 0.77 -0.9 905,639 - PGA1_c08760 0.77 -1.9 905,639 - PGA1_c08760 0.77 +0.4 905,711 - PGA1_c08760 0.80 -0.4 905,753 + PGA1_c08760 0.81 +0.4 905,814 + PGA1_c08760 0.83 +0.9 905,821 + PGA1_c08760 0.83 -1.7 905,821 + PGA1_c08760 0.83 -0.4 905,829 - PGA1_c08760 0.84 -1.0 905,843 + PGA1_c08760 0.84 -1.9 905,843 + PGA1_c08760 0.84 +0.4 905,931 - PGA1_c08760 0.87 -0.1 905,953 + PGA1_c08760 0.88 +0.7 905,957 + PGA1_c08760 0.88 +1.9 905,958 + PGA1_c08760 0.88 -0.9 905,961 - PGA1_c08760 0.88 -2.0 906,035 - +1.7 906,059 - +0.9 906,109 + -0.6 906,140 + -0.9 906,172 - +0.4 906,174 + +0.6 906,174 + -1.2 906,174 + +0.3 906,174 + -1.3 906,174 + +0.6 906,174 + +2.4 906,174 + -2.3 906,174 + +1.7 906,182 - +0.7 906,182 - -1.9 906,182 - -0.2 906,182 - +0.4 906,182 - +0.3 906,182 - +1.7 906,182 - +1.1 906,182 - +0.2 906,182 - -1.1 906,194 + +0.3 906,219 + -1.0 906,223 - -3.8 906,225 - -0.2 906,240 - -2.6 906,269 + -1.6 906,436 + PGA1_c08770 0.26 +0.5 906,452 + PGA1_c08770 0.29 -1.9 906,522 + PGA1_c08770 0.41 -0.0 906,530 - PGA1_c08770 0.43 +0.1 906,551 + PGA1_c08770 0.47 -0.1 906,555 - PGA1_c08770 0.47 +1.5 906,570 + PGA1_c08770 0.50 +2.0 906,613 + PGA1_c08770 0.58 +0.9 906,623 + PGA1_c08770 0.60 -1.8 906,630 + PGA1_c08770 0.61 -0.6 906,679 + PGA1_c08770 0.70 +0.7 906,688 + PGA1_c08770 0.72 +0.1 906,886 - -3.1 906,887 + -2.0 906,969 + PGA1_c08780 0.26 +1.1 907,060 + PGA1_c08780 0.53 -0.5
Or see this region's nucleotide sequence