Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08750

Experiment: m.b. nitrite 6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c08740 and PGA1_c08750 are separated by 304 nucleotidesPGA1_c08750 and PGA1_c08755 are separated by 81 nucleotidesPGA1_c08755 and PGA1_c08760 overlap by 1 nucleotides PGA1_c08740: PGA1_c08740 - glutamate dehydrogenase GluD, at 900,052 to 901,482 _c08740 PGA1_c08750: PGA1_c08750 - sarcosine oxidase subunit beta, at 901,787 to 903,040 _c08750 PGA1_c08755: PGA1_c08755 - sarcosine oxidase subunit delta, at 903,122 to 903,382 _c08755 PGA1_c08760: PGA1_c08760 - sarcosine oxidase subunit alpha, at 903,382 to 906,303 _c08760 Position (kb) 901 902 903 904Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 901.476 kb on + strandat 901.484 kb on - strandat 901.484 kb on - strandat 901.487 kb on + strandat 901.571 kb on - strandat 901.594 kb on + strandat 901.665 kb on + strandat 901.665 kb on + strandat 901.670 kb on + strandat 901.689 kb on + strandat 901.699 kb on + strandat 901.720 kb on + strandat 901.728 kb on - strandat 901.811 kb on - strandat 901.828 kb on - strandat 901.860 kb on + strandat 901.891 kb on + strandat 901.907 kb on + strandat 901.916 kb on - strand, within PGA1_c08750at 901.916 kb on - strand, within PGA1_c08750at 901.943 kb on + strand, within PGA1_c08750at 901.998 kb on + strand, within PGA1_c08750at 902.011 kb on + strand, within PGA1_c08750at 902.049 kb on + strand, within PGA1_c08750at 902.049 kb on + strand, within PGA1_c08750at 902.049 kb on + strand, within PGA1_c08750at 902.056 kb on + strand, within PGA1_c08750at 902.056 kb on + strand, within PGA1_c08750at 902.077 kb on + strand, within PGA1_c08750at 902.078 kb on - strand, within PGA1_c08750at 902.085 kb on - strand, within PGA1_c08750at 902.088 kb on + strand, within PGA1_c08750at 902.088 kb on + strand, within PGA1_c08750at 902.096 kb on - strand, within PGA1_c08750at 902.096 kb on - strand, within PGA1_c08750at 902.154 kb on + strand, within PGA1_c08750at 902.164 kb on + strand, within PGA1_c08750at 902.170 kb on - strand, within PGA1_c08750at 902.172 kb on - strand, within PGA1_c08750at 902.232 kb on + strand, within PGA1_c08750at 902.260 kb on - strand, within PGA1_c08750at 902.308 kb on + strand, within PGA1_c08750at 902.308 kb on - strand, within PGA1_c08750at 902.343 kb on + strand, within PGA1_c08750at 902.361 kb on + strand, within PGA1_c08750at 902.361 kb on + strand, within PGA1_c08750at 902.376 kb on + strand, within PGA1_c08750at 902.394 kb on + strand, within PGA1_c08750at 902.440 kb on - strand, within PGA1_c08750at 902.456 kb on + strand, within PGA1_c08750at 902.456 kb on + strand, within PGA1_c08750at 902.464 kb on - strand, within PGA1_c08750at 902.464 kb on - strand, within PGA1_c08750at 902.464 kb on - strand, within PGA1_c08750at 902.464 kb on - strand, within PGA1_c08750at 902.464 kb on - strand, within PGA1_c08750at 902.464 kb on - strand, within PGA1_c08750at 902.508 kb on - strand, within PGA1_c08750at 902.525 kb on + strand, within PGA1_c08750at 902.525 kb on + strand, within PGA1_c08750at 902.533 kb on - strand, within PGA1_c08750at 902.540 kb on + strand, within PGA1_c08750at 902.577 kb on + strand, within PGA1_c08750at 902.585 kb on - strand, within PGA1_c08750at 902.645 kb on - strand, within PGA1_c08750at 902.670 kb on + strand, within PGA1_c08750at 902.670 kb on + strand, within PGA1_c08750at 902.704 kb on - strand, within PGA1_c08750at 902.856 kb on + strand, within PGA1_c08750at 902.859 kb on - strand, within PGA1_c08750at 902.909 kb on - strand, within PGA1_c08750at 902.911 kb on + strand, within PGA1_c08750at 902.911 kb on + strand, within PGA1_c08750at 902.943 kb on - strandat 903.010 kb on + strandat 903.025 kb on + strandat 903.039 kb on + strandat 903.039 kb on + strandat 903.039 kb on + strandat 903.073 kb on + strandat 903.104 kb on + strandat 903.104 kb on + strandat 903.112 kb on - strandat 903.120 kb on - strandat 903.127 kb on - strandat 903.141 kb on + strandat 903.213 kb on + strand, within PGA1_c08755at 903.213 kb on + strand, within PGA1_c08755at 903.213 kb on + strand, within PGA1_c08755at 903.213 kb on + strand, within PGA1_c08755at 903.213 kb on + strand, within PGA1_c08755at 903.213 kb on + strand, within PGA1_c08755at 903.213 kb on + strand, within PGA1_c08755at 903.213 kb on + strand, within PGA1_c08755at 903.213 kb on + strand, within PGA1_c08755at 903.213 kb on + strand, within PGA1_c08755at 903.221 kb on - strand, within PGA1_c08755at 903.221 kb on - strand, within PGA1_c08755at 903.221 kb on - strand, within PGA1_c08755at 903.221 kb on - strand, within PGA1_c08755at 903.221 kb on - strand, within PGA1_c08755at 903.247 kb on + strand, within PGA1_c08755at 903.301 kb on - strand, within PGA1_c08755at 903.595 kb on - strandat 903.619 kb on - strandat 903.624 kb on + strandat 903.632 kb on - strandat 903.697 kb on - strand, within PGA1_c08760at 903.703 kb on + strand, within PGA1_c08760at 903.754 kb on + strand, within PGA1_c08760at 903.762 kb on - strand, within PGA1_c08760at 903.762 kb on - strand, within PGA1_c08760at 903.764 kb on + strand, within PGA1_c08760at 903.772 kb on - strand, within PGA1_c08760at 903.873 kb on - strand, within PGA1_c08760at 903.873 kb on - strand, within PGA1_c08760at 903.920 kb on - strand, within PGA1_c08760at 903.952 kb on + strand, within PGA1_c08760at 903.957 kb on - strand, within PGA1_c08760at 904.000 kb on + strand, within PGA1_c08760at 904.040 kb on - strand, within PGA1_c08760

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 6 mM
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901,476 + +0.6
901,484 - -0.6
901,484 - -0.2
901,487 + +0.3
901,571 - -2.1
901,594 + -0.1
901,665 + -1.2
901,665 + -0.5
901,670 + +0.8
901,689 + +1.1
901,699 + +0.2
901,720 + +1.4
901,728 - -2.2
901,811 - +2.9
901,828 - +0.9
901,860 + -0.9
901,891 + -1.2
901,907 + -0.9
901,916 - PGA1_c08750 0.10 +1.5
901,916 - PGA1_c08750 0.10 -1.0
901,943 + PGA1_c08750 0.12 -2.6
901,998 + PGA1_c08750 0.17 -0.1
902,011 + PGA1_c08750 0.18 +0.7
902,049 + PGA1_c08750 0.21 +1.2
902,049 + PGA1_c08750 0.21 -0.9
902,049 + PGA1_c08750 0.21 -1.0
902,056 + PGA1_c08750 0.21 -0.2
902,056 + PGA1_c08750 0.21 -0.4
902,077 + PGA1_c08750 0.23 +0.4
902,078 - PGA1_c08750 0.23 +0.5
902,085 - PGA1_c08750 0.24 +0.1
902,088 + PGA1_c08750 0.24 +1.4
902,088 + PGA1_c08750 0.24 +0.9
902,096 - PGA1_c08750 0.25 -0.7
902,096 - PGA1_c08750 0.25 +0.5
902,154 + PGA1_c08750 0.29 +1.0
902,164 + PGA1_c08750 0.30 +0.6
902,170 - PGA1_c08750 0.31 -1.5
902,172 - PGA1_c08750 0.31 -2.1
902,232 + PGA1_c08750 0.35 +0.1
902,260 - PGA1_c08750 0.38 +0.3
902,308 + PGA1_c08750 0.42 -1.6
902,308 - PGA1_c08750 0.42 +0.0
902,343 + PGA1_c08750 0.44 -0.1
902,361 + PGA1_c08750 0.46 +0.9
902,361 + PGA1_c08750 0.46 -2.9
902,376 + PGA1_c08750 0.47 +0.4
902,394 + PGA1_c08750 0.48 -2.3
902,440 - PGA1_c08750 0.52 -2.0
902,456 + PGA1_c08750 0.53 -1.6
902,456 + PGA1_c08750 0.53 -1.2
902,464 - PGA1_c08750 0.54 -0.1
902,464 - PGA1_c08750 0.54 -1.4
902,464 - PGA1_c08750 0.54 +1.8
902,464 - PGA1_c08750 0.54 -0.0
902,464 - PGA1_c08750 0.54 +0.6
902,464 - PGA1_c08750 0.54 -0.7
902,508 - PGA1_c08750 0.57 +0.7
902,525 + PGA1_c08750 0.59 +0.7
902,525 + PGA1_c08750 0.59 +0.4
902,533 - PGA1_c08750 0.59 -3.4
902,540 + PGA1_c08750 0.60 -0.6
902,577 + PGA1_c08750 0.63 +0.0
902,585 - PGA1_c08750 0.64 +0.1
902,645 - PGA1_c08750 0.68 -2.3
902,670 + PGA1_c08750 0.70 -0.6
902,670 + PGA1_c08750 0.70 -2.3
902,704 - PGA1_c08750 0.73 -3.0
902,856 + PGA1_c08750 0.85 -0.2
902,859 - PGA1_c08750 0.85 -2.9
902,909 - PGA1_c08750 0.89 -0.9
902,911 + PGA1_c08750 0.90 +0.1
902,911 + PGA1_c08750 0.90 +2.0
902,943 - +0.8
903,010 + +0.6
903,025 + +0.7
903,039 + +1.1
903,039 + +1.0
903,039 + +2.4
903,073 + +1.0
903,104 + -0.9
903,104 + +1.3
903,112 - +1.4
903,120 - -1.0
903,127 - -1.2
903,141 + -1.4
903,213 + PGA1_c08755 0.35 -2.1
903,213 + PGA1_c08755 0.35 +0.3
903,213 + PGA1_c08755 0.35 +0.8
903,213 + PGA1_c08755 0.35 +1.5
903,213 + PGA1_c08755 0.35 +0.4
903,213 + PGA1_c08755 0.35 -1.1
903,213 + PGA1_c08755 0.35 -0.6
903,213 + PGA1_c08755 0.35 -2.6
903,213 + PGA1_c08755 0.35 -0.5
903,213 + PGA1_c08755 0.35 +0.1
903,221 - PGA1_c08755 0.38 -2.1
903,221 - PGA1_c08755 0.38 +0.1
903,221 - PGA1_c08755 0.38 -0.0
903,221 - PGA1_c08755 0.38 -1.3
903,221 - PGA1_c08755 0.38 -1.6
903,247 + PGA1_c08755 0.48 -1.2
903,301 - PGA1_c08755 0.69 +1.8
903,595 - -1.1
903,619 - -1.4
903,624 + -0.5
903,632 - +1.1
903,697 - PGA1_c08760 0.11 -0.3
903,703 + PGA1_c08760 0.11 +1.0
903,754 + PGA1_c08760 0.13 +0.1
903,762 - PGA1_c08760 0.13 -0.4
903,762 - PGA1_c08760 0.13 -0.4
903,764 + PGA1_c08760 0.13 -1.3
903,772 - PGA1_c08760 0.13 +2.0
903,873 - PGA1_c08760 0.17 +1.4
903,873 - PGA1_c08760 0.17 +1.4
903,920 - PGA1_c08760 0.18 -1.2
903,952 + PGA1_c08760 0.20 +1.8
903,957 - PGA1_c08760 0.20 -1.4
904,000 + PGA1_c08760 0.21 -0.6
904,040 - PGA1_c08760 0.23 -0.6

Or see this region's nucleotide sequence