Experiment: m.b. nitrite 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08490 and PGA1_c08500 are separated by 235 nucleotides PGA1_c08500 and PGA1_c08510 are separated by 13 nucleotides PGA1_c08510 and PGA1_c08520 overlap by 8 nucleotides PGA1_c08520 and PGA1_c08530 overlap by 4 nucleotides
PGA1_c08490: PGA1_c08490 - Uncharacterized protein conserved in bacteria, at 877,500 to 877,916
_c08490
PGA1_c08500: PGA1_c08500 - hypothetical protein, at 878,152 to 878,655
_c08500
PGA1_c08510: PGA1_c08510 - RNA polymerase sigma factor (ECF01 subgroup, ECF20 subgroup), at 878,669 to 879,328
_c08510
PGA1_c08520: PGA1_c08520 - hypothetical protein, at 879,321 to 879,797
_c08520
PGA1_c08530: PGA1_c08530 - Predicted integral membrane protein, at 879,794 to 880,273
_c08530
Position (kb) 878
879
880 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 877.713 kb on + strand, within PGA1_c08490 at 877.963 kb on + strand at 877.983 kb on + strand at 877.986 kb on - strand at 878.012 kb on - strand at 878.021 kb on + strand at 878.029 kb on + strand at 878.083 kb on + strand at 878.267 kb on + strand, within PGA1_c08500 at 878.329 kb on + strand, within PGA1_c08500 at 878.401 kb on + strand, within PGA1_c08500 at 878.401 kb on + strand, within PGA1_c08500 at 878.404 kb on - strand, within PGA1_c08500 at 878.409 kb on - strand, within PGA1_c08500 at 878.474 kb on + strand, within PGA1_c08500 at 878.512 kb on + strand, within PGA1_c08500 at 878.520 kb on - strand, within PGA1_c08500 at 878.553 kb on - strand, within PGA1_c08500 at 878.606 kb on + strand at 878.621 kb on + strand at 878.719 kb on - strand at 878.736 kb on - strand, within PGA1_c08510 at 878.759 kb on + strand, within PGA1_c08510 at 879.305 kb on + strand at 879.560 kb on + strand, within PGA1_c08520
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 6 mM remove 877,713 + PGA1_c08490 0.51 -2.2 877,963 + -0.2 877,983 + -0.4 877,986 - +1.2 878,012 - +1.9 878,021 + -0.3 878,029 + -0.4 878,083 + +3.3 878,267 + PGA1_c08500 0.23 +1.3 878,329 + PGA1_c08500 0.35 -0.3 878,401 + PGA1_c08500 0.49 -0.2 878,401 + PGA1_c08500 0.49 -1.6 878,404 - PGA1_c08500 0.50 -1.8 878,409 - PGA1_c08500 0.51 -1.7 878,474 + PGA1_c08500 0.64 +0.3 878,512 + PGA1_c08500 0.71 +3.2 878,520 - PGA1_c08500 0.73 -0.2 878,553 - PGA1_c08500 0.80 +0.5 878,606 + -1.2 878,621 + +0.7 878,719 - +0.1 878,736 - PGA1_c08510 0.10 -1.2 878,759 + PGA1_c08510 0.14 -0.6 879,305 + +0.1 879,560 + PGA1_c08520 0.50 +2.0
Or see this region's nucleotide sequence