Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c00850

Experiment: m.b. nitrite 6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c00840 and PGA1_c00850 are separated by 326 nucleotidesPGA1_c00850 and PGA1_c00860 are separated by 156 nucleotides PGA1_c00840: PGA1_c00840 - glutathione transferase-like protein, at 83,063 to 84,037 _c00840 PGA1_c00850: PGA1_c00850 - hypothetical protein, at 84,364 to 84,726 _c00850 PGA1_c00860: PGA1_c00860 - cystathionine beta-lyase PatB, at 84,883 to 86,055 _c00860 Position (kb) 84 85Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 83.382 kb on - strand, within PGA1_c00840at 83.383 kb on + strand, within PGA1_c00840at 83.384 kb on + strand, within PGA1_c00840at 83.392 kb on - strand, within PGA1_c00840at 83.450 kb on + strand, within PGA1_c00840at 83.494 kb on - strand, within PGA1_c00840at 83.496 kb on + strand, within PGA1_c00840at 83.517 kb on - strand, within PGA1_c00840at 83.518 kb on + strand, within PGA1_c00840at 83.533 kb on + strand, within PGA1_c00840at 83.541 kb on - strand, within PGA1_c00840at 83.554 kb on + strand, within PGA1_c00840at 83.562 kb on - strand, within PGA1_c00840at 83.562 kb on - strand, within PGA1_c00840at 83.565 kb on + strand, within PGA1_c00840at 83.565 kb on + strand, within PGA1_c00840at 83.565 kb on + strand, within PGA1_c00840at 83.585 kb on - strand, within PGA1_c00840at 83.589 kb on + strand, within PGA1_c00840at 83.592 kb on - strand, within PGA1_c00840at 83.650 kb on + strand, within PGA1_c00840at 83.658 kb on - strand, within PGA1_c00840at 83.663 kb on - strand, within PGA1_c00840at 83.663 kb on - strand, within PGA1_c00840at 83.675 kb on + strand, within PGA1_c00840at 83.675 kb on + strand, within PGA1_c00840at 83.703 kb on - strand, within PGA1_c00840at 83.708 kb on - strand, within PGA1_c00840at 83.721 kb on - strand, within PGA1_c00840at 83.722 kb on - strand, within PGA1_c00840at 83.747 kb on + strand, within PGA1_c00840at 83.748 kb on + strand, within PGA1_c00840at 83.800 kb on - strand, within PGA1_c00840at 83.834 kb on + strand, within PGA1_c00840at 83.841 kb on + strand, within PGA1_c00840at 83.841 kb on + strand, within PGA1_c00840at 83.842 kb on + strand, within PGA1_c00840at 83.849 kb on - strand, within PGA1_c00840at 83.849 kb on - strand, within PGA1_c00840at 83.855 kb on - strand, within PGA1_c00840at 83.908 kb on - strand, within PGA1_c00840at 83.913 kb on + strand, within PGA1_c00840at 84.044 kb on + strandat 84.046 kb on + strandat 84.052 kb on - strandat 84.052 kb on - strandat 84.054 kb on - strandat 84.054 kb on - strandat 84.064 kb on - strandat 84.076 kb on - strandat 84.084 kb on - strandat 84.084 kb on - strandat 84.088 kb on - strandat 84.105 kb on - strandat 84.139 kb on + strandat 84.146 kb on + strandat 84.146 kb on + strandat 84.146 kb on + strandat 84.154 kb on - strandat 84.161 kb on + strandat 84.185 kb on + strandat 84.190 kb on + strandat 84.194 kb on + strandat 84.202 kb on + strandat 84.202 kb on + strandat 84.220 kb on - strandat 84.263 kb on + strandat 84.274 kb on + strandat 84.279 kb on - strandat 84.279 kb on - strandat 84.282 kb on - strandat 84.282 kb on - strandat 84.282 kb on - strandat 84.325 kb on + strandat 84.366 kb on + strandat 84.401 kb on - strand, within PGA1_c00850at 84.412 kb on + strand, within PGA1_c00850at 84.414 kb on + strand, within PGA1_c00850at 84.414 kb on + strand, within PGA1_c00850at 84.415 kb on - strand, within PGA1_c00850at 84.415 kb on - strand, within PGA1_c00850at 84.422 kb on - strand, within PGA1_c00850at 84.422 kb on - strand, within PGA1_c00850at 84.521 kb on + strand, within PGA1_c00850at 84.540 kb on + strand, within PGA1_c00850at 84.607 kb on + strand, within PGA1_c00850at 84.607 kb on + strand, within PGA1_c00850at 84.677 kb on + strand, within PGA1_c00850at 84.687 kb on - strand, within PGA1_c00850at 84.689 kb on + strand, within PGA1_c00850at 84.689 kb on + strand, within PGA1_c00850at 84.699 kb on + strandat 84.728 kb on - strandat 84.736 kb on + strandat 84.739 kb on - strandat 84.756 kb on - strandat 84.765 kb on - strandat 84.856 kb on - strandat 84.864 kb on + strandat 84.864 kb on + strandat 84.872 kb on - strandat 84.872 kb on - strandat 84.872 kb on - strandat 84.882 kb on + strandat 84.926 kb on + strandat 84.926 kb on + strandat 84.927 kb on + strandat 84.934 kb on - strandat 84.934 kb on - strandat 85.026 kb on + strand, within PGA1_c00860at 85.026 kb on + strand, within PGA1_c00860at 85.026 kb on + strand, within PGA1_c00860at 85.026 kb on + strand, within PGA1_c00860at 85.034 kb on - strand, within PGA1_c00860at 85.034 kb on - strand, within PGA1_c00860at 85.034 kb on - strand, within PGA1_c00860at 85.034 kb on - strand, within PGA1_c00860at 85.034 kb on - strand, within PGA1_c00860at 85.034 kb on - strand, within PGA1_c00860at 85.034 kb on - strand, within PGA1_c00860at 85.034 kb on - strand, within PGA1_c00860at 85.034 kb on - strand, within PGA1_c00860at 85.034 kb on - strand, within PGA1_c00860at 85.054 kb on + strand, within PGA1_c00860at 85.054 kb on + strand, within PGA1_c00860at 85.054 kb on + strand, within PGA1_c00860at 85.062 kb on - strand, within PGA1_c00860at 85.062 kb on - strand, within PGA1_c00860at 85.062 kb on - strand, within PGA1_c00860at 85.062 kb on - strand, within PGA1_c00860at 85.062 kb on - strand, within PGA1_c00860at 85.091 kb on - strand, within PGA1_c00860at 85.098 kb on + strand, within PGA1_c00860at 85.102 kb on - strand, within PGA1_c00860at 85.104 kb on + strand, within PGA1_c00860at 85.106 kb on + strand, within PGA1_c00860at 85.112 kb on - strand, within PGA1_c00860at 85.112 kb on - strand, within PGA1_c00860at 85.122 kb on - strand, within PGA1_c00860at 85.122 kb on - strand, within PGA1_c00860at 85.125 kb on + strand, within PGA1_c00860at 85.129 kb on - strand, within PGA1_c00860at 85.145 kb on + strand, within PGA1_c00860at 85.183 kb on - strand, within PGA1_c00860at 85.203 kb on + strand, within PGA1_c00860at 85.210 kb on - strand, within PGA1_c00860at 85.315 kb on + strand, within PGA1_c00860at 85.318 kb on - strand, within PGA1_c00860at 85.390 kb on + strand, within PGA1_c00860at 85.395 kb on + strand, within PGA1_c00860at 85.398 kb on - strand, within PGA1_c00860at 85.398 kb on - strand, within PGA1_c00860at 85.413 kb on + strand, within PGA1_c00860at 85.413 kb on + strand, within PGA1_c00860at 85.413 kb on + strand, within PGA1_c00860at 85.436 kb on + strand, within PGA1_c00860at 85.476 kb on - strand, within PGA1_c00860at 85.509 kb on + strand, within PGA1_c00860at 85.509 kb on + strand, within PGA1_c00860at 85.509 kb on + strand, within PGA1_c00860at 85.520 kb on + strand, within PGA1_c00860at 85.520 kb on + strand, within PGA1_c00860at 85.520 kb on + strand, within PGA1_c00860at 85.520 kb on + strand, within PGA1_c00860at 85.528 kb on - strand, within PGA1_c00860at 85.557 kb on + strand, within PGA1_c00860at 85.651 kb on - strand, within PGA1_c00860at 85.653 kb on + strand, within PGA1_c00860at 85.661 kb on - strand, within PGA1_c00860at 85.661 kb on - strand, within PGA1_c00860at 85.661 kb on - strand, within PGA1_c00860at 85.680 kb on + strand, within PGA1_c00860at 85.700 kb on + strand, within PGA1_c00860at 85.700 kb on + strand, within PGA1_c00860at 85.700 kb on + strand, within PGA1_c00860at 85.700 kb on + strand, within PGA1_c00860at 85.708 kb on - strand, within PGA1_c00860

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 6 mM
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83,382 - PGA1_c00840 0.33 +0.1
83,383 + PGA1_c00840 0.33 +0.3
83,384 + PGA1_c00840 0.33 -0.4
83,392 - PGA1_c00840 0.34 -1.3
83,450 + PGA1_c00840 0.40 -3.0
83,494 - PGA1_c00840 0.44 +2.2
83,496 + PGA1_c00840 0.44 +1.3
83,517 - PGA1_c00840 0.47 -0.5
83,518 + PGA1_c00840 0.47 +0.4
83,533 + PGA1_c00840 0.48 +0.1
83,541 - PGA1_c00840 0.49 -1.2
83,554 + PGA1_c00840 0.50 -1.8
83,562 - PGA1_c00840 0.51 -0.9
83,562 - PGA1_c00840 0.51 -1.7
83,565 + PGA1_c00840 0.51 -1.4
83,565 + PGA1_c00840 0.51 +0.9
83,565 + PGA1_c00840 0.51 -0.1
83,585 - PGA1_c00840 0.54 +1.3
83,589 + PGA1_c00840 0.54 +1.6
83,592 - PGA1_c00840 0.54 +0.4
83,650 + PGA1_c00840 0.60 -0.7
83,658 - PGA1_c00840 0.61 +1.3
83,663 - PGA1_c00840 0.62 +1.1
83,663 - PGA1_c00840 0.62 -1.0
83,675 + PGA1_c00840 0.63 +1.0
83,675 + PGA1_c00840 0.63 -1.1
83,703 - PGA1_c00840 0.66 +0.0
83,708 - PGA1_c00840 0.66 -3.2
83,721 - PGA1_c00840 0.67 +0.6
83,722 - PGA1_c00840 0.68 -0.2
83,747 + PGA1_c00840 0.70 -0.6
83,748 + PGA1_c00840 0.70 -0.6
83,800 - PGA1_c00840 0.76 -1.1
83,834 + PGA1_c00840 0.79 -1.1
83,841 + PGA1_c00840 0.80 -0.2
83,841 + PGA1_c00840 0.80 +0.7
83,842 + PGA1_c00840 0.80 +1.2
83,849 - PGA1_c00840 0.81 -0.7
83,849 - PGA1_c00840 0.81 -0.1
83,855 - PGA1_c00840 0.81 -3.0
83,908 - PGA1_c00840 0.87 -1.2
83,913 + PGA1_c00840 0.87 +0.3
84,044 + +0.7
84,046 + -2.7
84,052 - +0.1
84,052 - +0.5
84,054 - +0.3
84,054 - +1.8
84,064 - +0.9
84,076 - -0.0
84,084 - -0.4
84,084 - -0.2
84,088 - -0.2
84,105 - -0.5
84,139 + -1.1
84,146 + -0.5
84,146 + -1.1
84,146 + +0.5
84,154 - +0.2
84,161 + -0.2
84,185 + +0.9
84,190 + -1.2
84,194 + -1.4
84,202 + -0.6
84,202 + -0.6
84,220 - +0.8
84,263 + -2.0
84,274 + -0.0
84,279 - +1.0
84,279 - -1.2
84,282 - +1.9
84,282 - +0.8
84,282 - +0.7
84,325 + +1.6
84,366 + +0.3
84,401 - PGA1_c00850 0.10 -1.6
84,412 + PGA1_c00850 0.13 -0.2
84,414 + PGA1_c00850 0.14 +0.6
84,414 + PGA1_c00850 0.14 +0.1
84,415 - PGA1_c00850 0.14 -1.2
84,415 - PGA1_c00850 0.14 -1.2
84,422 - PGA1_c00850 0.16 +1.5
84,422 - PGA1_c00850 0.16 -1.4
84,521 + PGA1_c00850 0.43 +0.4
84,540 + PGA1_c00850 0.48 -1.1
84,607 + PGA1_c00850 0.67 +0.7
84,607 + PGA1_c00850 0.67 -2.0
84,677 + PGA1_c00850 0.86 -2.1
84,687 - PGA1_c00850 0.89 -0.6
84,689 + PGA1_c00850 0.90 +0.2
84,689 + PGA1_c00850 0.90 -3.0
84,699 + -0.7
84,728 - +0.3
84,736 + -1.2
84,739 - -0.9
84,756 - -0.8
84,765 - -2.4
84,856 - -1.6
84,864 + +1.5
84,864 + +1.1
84,872 - +0.7
84,872 - -0.5
84,872 - -1.2
84,882 + -0.5
84,926 + -2.3
84,926 + +0.3
84,927 + -0.5
84,934 - -1.1
84,934 - +0.4
85,026 + PGA1_c00860 0.12 +0.2
85,026 + PGA1_c00860 0.12 -0.7
85,026 + PGA1_c00860 0.12 +0.1
85,026 + PGA1_c00860 0.12 -3.0
85,034 - PGA1_c00860 0.13 +1.3
85,034 - PGA1_c00860 0.13 -1.2
85,034 - PGA1_c00860 0.13 -0.1
85,034 - PGA1_c00860 0.13 -0.5
85,034 - PGA1_c00860 0.13 +0.7
85,034 - PGA1_c00860 0.13 +0.1
85,034 - PGA1_c00860 0.13 -1.3
85,034 - PGA1_c00860 0.13 +0.0
85,034 - PGA1_c00860 0.13 -1.6
85,034 - PGA1_c00860 0.13 +0.3
85,054 + PGA1_c00860 0.15 -3.4
85,054 + PGA1_c00860 0.15 -0.2
85,054 + PGA1_c00860 0.15 -0.7
85,062 - PGA1_c00860 0.15 +0.5
85,062 - PGA1_c00860 0.15 -0.5
85,062 - PGA1_c00860 0.15 +0.7
85,062 - PGA1_c00860 0.15 +0.5
85,062 - PGA1_c00860 0.15 +0.5
85,091 - PGA1_c00860 0.18 +1.1
85,098 + PGA1_c00860 0.18 -0.1
85,102 - PGA1_c00860 0.19 -1.5
85,104 + PGA1_c00860 0.19 -0.1
85,106 + PGA1_c00860 0.19 -2.4
85,112 - PGA1_c00860 0.20 +0.3
85,112 - PGA1_c00860 0.20 -0.6
85,122 - PGA1_c00860 0.20 -0.0
85,122 - PGA1_c00860 0.20 +1.0
85,125 + PGA1_c00860 0.21 -0.4
85,129 - PGA1_c00860 0.21 -1.5
85,145 + PGA1_c00860 0.22 -0.6
85,183 - PGA1_c00860 0.26 -2.1
85,203 + PGA1_c00860 0.27 -0.7
85,210 - PGA1_c00860 0.28 -1.9
85,315 + PGA1_c00860 0.37 -0.8
85,318 - PGA1_c00860 0.37 -0.7
85,390 + PGA1_c00860 0.43 -0.1
85,395 + PGA1_c00860 0.44 +0.6
85,398 - PGA1_c00860 0.44 -1.3
85,398 - PGA1_c00860 0.44 -1.1
85,413 + PGA1_c00860 0.45 +0.2
85,413 + PGA1_c00860 0.45 -0.4
85,413 + PGA1_c00860 0.45 +0.2
85,436 + PGA1_c00860 0.47 -1.1
85,476 - PGA1_c00860 0.51 +0.2
85,509 + PGA1_c00860 0.53 -1.7
85,509 + PGA1_c00860 0.53 -1.5
85,509 + PGA1_c00860 0.53 -1.3
85,520 + PGA1_c00860 0.54 -1.1
85,520 + PGA1_c00860 0.54 -0.1
85,520 + PGA1_c00860 0.54 +0.9
85,520 + PGA1_c00860 0.54 +1.3
85,528 - PGA1_c00860 0.55 -0.6
85,557 + PGA1_c00860 0.57 +0.6
85,651 - PGA1_c00860 0.65 -0.2
85,653 + PGA1_c00860 0.66 +0.3
85,661 - PGA1_c00860 0.66 -1.8
85,661 - PGA1_c00860 0.66 -0.7
85,661 - PGA1_c00860 0.66 -0.5
85,680 + PGA1_c00860 0.68 +0.5
85,700 + PGA1_c00860 0.70 -0.7
85,700 + PGA1_c00860 0.70 -0.1
85,700 + PGA1_c00860 0.70 +0.5
85,700 + PGA1_c00860 0.70 -0.2
85,708 - PGA1_c00860 0.70 -1.5

Or see this region's nucleotide sequence