Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08090

Experiment: m.b. nitrite 6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c08080 and PGA1_c08090 are separated by 4 nucleotidesPGA1_c08090 and PGA1_c08100 overlap by 4 nucleotidesPGA1_c08100 and PGA1_c08110 overlap by 4 nucleotides PGA1_c08080: PGA1_c08080 - putative cobyrinic acid A,C-diamide synthase CobB, at 837,077 to 838,408 _c08080 PGA1_c08090: PGA1_c08090 - precorrin-4 C(11)-methyltransferase CobM, at 838,413 to 839,207 _c08090 PGA1_c08100: PGA1_c08100 - Cobalamin synthesis G C-terminus., at 839,204 to 839,581 _c08100 PGA1_c08110: PGA1_c08110 - precorrin-6Y C(5,15)-methyltransferase, at 839,578 to 840,762 _c08110 Position (kb) 838 839 840Strain fitness (log2 ratio) -1 0 1at 838.439 kb on + strandat 838.490 kb on + strandat 839.217 kb on - strandat 839.217 kb on - strandat 839.574 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 6 mM
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838,439 + -1.2
838,490 + -1.2
839,217 - +0.1
839,217 - +1.2
839,574 + -1.7

Or see this region's nucleotide sequence