Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06250

Experiment: m.b. nitrite 6 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c06240 and PGA1_c06250 are separated by 199 nucleotidesPGA1_c06250 and PGA1_c06260 are separated by 122 nucleotides PGA1_c06240: PGA1_c06240 - protein TldD, at 639,446 to 640,867 _c06240 PGA1_c06250: PGA1_c06250 - cytochrome c oxidase subunit 2, at 641,067 to 641,906 _c06250 PGA1_c06260: PGA1_c06260 - protoheme IX farnesyltransferase CtaB, at 642,029 to 642,970 _c06260 Position (kb) 641 642Strain fitness (log2 ratio) -2 -1 0 1at 640.090 kb on + strand, within PGA1_c06240at 640.258 kb on - strand, within PGA1_c06240at 640.258 kb on - strand, within PGA1_c06240at 640.258 kb on - strand, within PGA1_c06240at 640.262 kb on - strand, within PGA1_c06240at 640.572 kb on + strand, within PGA1_c06240at 640.643 kb on + strand, within PGA1_c06240at 640.650 kb on - strand, within PGA1_c06240at 640.749 kb on - strandat 640.816 kb on - strandat 640.821 kb on + strandat 640.860 kb on - strandat 640.868 kb on + strandat 640.916 kb on + strandat 641.061 kb on - strandat 641.895 kb on + strandat 641.908 kb on - strandat 642.049 kb on + strandat 642.175 kb on + strand, within PGA1_c06260at 642.708 kb on - strand, within PGA1_c06260

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 6 mM
remove
640,090 + PGA1_c06240 0.45 +0.9
640,258 - PGA1_c06240 0.57 +1.1
640,258 - PGA1_c06240 0.57 +0.2
640,258 - PGA1_c06240 0.57 +0.7
640,262 - PGA1_c06240 0.57 -1.0
640,572 + PGA1_c06240 0.79 -1.2
640,643 + PGA1_c06240 0.84 +0.6
640,650 - PGA1_c06240 0.85 +1.2
640,749 - -0.4
640,816 - -1.4
640,821 + +1.2
640,860 - -2.3
640,868 + -1.0
640,916 + +0.0
641,061 - -0.0
641,895 + -0.5
641,908 - -1.3
642,049 + -2.5
642,175 + PGA1_c06260 0.15 +1.2
642,708 - PGA1_c06260 0.72 -2.0

Or see this region's nucleotide sequence