Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06240

Experiment: m.b. nitrite 6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c06230 and PGA1_c06240 are separated by 319 nucleotidesPGA1_c06240 and PGA1_c06250 are separated by 199 nucleotides PGA1_c06230: PGA1_c06230 - putative protein Smf, at 637,888 to 639,126 _c06230 PGA1_c06240: PGA1_c06240 - protein TldD, at 639,446 to 640,867 _c06240 PGA1_c06250: PGA1_c06250 - cytochrome c oxidase subunit 2, at 641,067 to 641,906 _c06250 Position (kb) 639 640 641Strain fitness (log2 ratio) -2 -1 0 1 2 3at 638.492 kb on + strand, within PGA1_c06230at 638.492 kb on + strand, within PGA1_c06230at 638.531 kb on - strand, within PGA1_c06230at 638.531 kb on - strand, within PGA1_c06230at 638.531 kb on - strand, within PGA1_c06230at 638.531 kb on - strand, within PGA1_c06230at 638.569 kb on - strand, within PGA1_c06230at 638.569 kb on - strand, within PGA1_c06230at 638.592 kb on + strand, within PGA1_c06230at 638.652 kb on + strand, within PGA1_c06230at 638.675 kb on + strand, within PGA1_c06230at 638.677 kb on - strand, within PGA1_c06230at 638.772 kb on - strand, within PGA1_c06230at 638.785 kb on - strand, within PGA1_c06230at 638.930 kb on + strand, within PGA1_c06230at 638.954 kb on + strand, within PGA1_c06230at 638.962 kb on - strand, within PGA1_c06230at 638.977 kb on + strand, within PGA1_c06230at 639.032 kb on + strandat 639.088 kb on - strandat 639.089 kb on + strandat 639.090 kb on - strandat 639.095 kb on - strandat 639.097 kb on - strandat 639.116 kb on - strandat 639.130 kb on - strandat 639.155 kb on + strandat 639.158 kb on - strandat 639.160 kb on + strandat 639.163 kb on + strandat 639.168 kb on - strandat 639.171 kb on + strandat 639.277 kb on + strandat 639.301 kb on + strandat 639.431 kb on - strandat 639.443 kb on + strandat 639.443 kb on + strandat 639.451 kb on - strandat 639.451 kb on - strandat 639.451 kb on - strandat 639.451 kb on - strandat 639.451 kb on - strandat 639.479 kb on + strandat 639.515 kb on + strandat 639.516 kb on + strandat 639.516 kb on + strandat 639.551 kb on + strandat 639.624 kb on + strand, within PGA1_c06240at 639.632 kb on - strand, within PGA1_c06240at 639.632 kb on - strand, within PGA1_c06240at 639.672 kb on + strand, within PGA1_c06240at 639.732 kb on + strand, within PGA1_c06240at 639.753 kb on + strand, within PGA1_c06240at 639.790 kb on + strand, within PGA1_c06240at 639.790 kb on + strand, within PGA1_c06240at 639.790 kb on + strand, within PGA1_c06240at 639.790 kb on + strand, within PGA1_c06240at 639.790 kb on + strand, within PGA1_c06240at 639.798 kb on - strand, within PGA1_c06240at 639.798 kb on - strand, within PGA1_c06240at 639.798 kb on - strand, within PGA1_c06240at 639.798 kb on - strand, within PGA1_c06240at 639.811 kb on - strand, within PGA1_c06240at 639.868 kb on - strand, within PGA1_c06240at 639.918 kb on + strand, within PGA1_c06240at 640.038 kb on + strand, within PGA1_c06240at 640.090 kb on + strand, within PGA1_c06240at 640.258 kb on - strand, within PGA1_c06240at 640.258 kb on - strand, within PGA1_c06240at 640.258 kb on - strand, within PGA1_c06240at 640.262 kb on - strand, within PGA1_c06240at 640.572 kb on + strand, within PGA1_c06240at 640.643 kb on + strand, within PGA1_c06240at 640.650 kb on - strand, within PGA1_c06240at 640.749 kb on - strandat 640.816 kb on - strandat 640.821 kb on + strandat 640.860 kb on - strandat 640.868 kb on + strandat 640.916 kb on + strandat 641.061 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 6 mM
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638,492 + PGA1_c06230 0.49 +1.2
638,492 + PGA1_c06230 0.49 +0.9
638,531 - PGA1_c06230 0.52 +1.3
638,531 - PGA1_c06230 0.52 -1.2
638,531 - PGA1_c06230 0.52 +1.5
638,531 - PGA1_c06230 0.52 +0.5
638,569 - PGA1_c06230 0.55 -0.5
638,569 - PGA1_c06230 0.55 -1.6
638,592 + PGA1_c06230 0.57 -0.3
638,652 + PGA1_c06230 0.62 -0.3
638,675 + PGA1_c06230 0.64 +1.2
638,677 - PGA1_c06230 0.64 +0.9
638,772 - PGA1_c06230 0.71 +1.5
638,785 - PGA1_c06230 0.72 -0.5
638,930 + PGA1_c06230 0.84 +0.4
638,954 + PGA1_c06230 0.86 -1.0
638,962 - PGA1_c06230 0.87 -1.1
638,977 + PGA1_c06230 0.88 +1.1
639,032 + -0.7
639,088 - +0.3
639,089 + +1.1
639,090 - -0.1
639,095 - +0.3
639,097 - +1.0
639,116 - -0.9
639,130 - -1.6
639,155 + -0.4
639,158 - +2.6
639,160 + -0.3
639,163 + +0.3
639,168 - -0.7
639,171 + +0.7
639,277 + -0.3
639,301 + +0.8
639,431 - -1.1
639,443 + +0.3
639,443 + +2.9
639,451 - +2.2
639,451 - -1.3
639,451 - -0.3
639,451 - -1.5
639,451 - -2.4
639,479 + +1.0
639,515 + +0.2
639,516 + -0.2
639,516 + -0.4
639,551 + -1.6
639,624 + PGA1_c06240 0.13 +0.4
639,632 - PGA1_c06240 0.13 -0.4
639,632 - PGA1_c06240 0.13 -2.7
639,672 + PGA1_c06240 0.16 -2.0
639,732 + PGA1_c06240 0.20 +0.0
639,753 + PGA1_c06240 0.22 -0.4
639,790 + PGA1_c06240 0.24 -2.4
639,790 + PGA1_c06240 0.24 +1.4
639,790 + PGA1_c06240 0.24 +0.7
639,790 + PGA1_c06240 0.24 -2.7
639,790 + PGA1_c06240 0.24 -0.7
639,798 - PGA1_c06240 0.25 +1.8
639,798 - PGA1_c06240 0.25 +3.2
639,798 - PGA1_c06240 0.25 -0.4
639,798 - PGA1_c06240 0.25 -0.7
639,811 - PGA1_c06240 0.26 +1.5
639,868 - PGA1_c06240 0.30 -1.6
639,918 + PGA1_c06240 0.33 -1.4
640,038 + PGA1_c06240 0.42 +1.1
640,090 + PGA1_c06240 0.45 +0.9
640,258 - PGA1_c06240 0.57 +1.1
640,258 - PGA1_c06240 0.57 +0.2
640,258 - PGA1_c06240 0.57 +0.7
640,262 - PGA1_c06240 0.57 -1.0
640,572 + PGA1_c06240 0.79 -1.2
640,643 + PGA1_c06240 0.84 +0.6
640,650 - PGA1_c06240 0.85 +1.2
640,749 - -0.4
640,816 - -1.4
640,821 + +1.2
640,860 - -2.3
640,868 + -1.0
640,916 + +0.0
641,061 - -0.0

Or see this region's nucleotide sequence