Experiment: m.b. nitrite 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05970 and PGA1_c05980 are separated by 184 nucleotides PGA1_c05980 and PGA1_c05990 are separated by 222 nucleotides
PGA1_c05970: PGA1_c05970 - ATP-dependent zinc metalloprotease FtsH, at 609,640 to 611,553
_c05970
PGA1_c05980: PGA1_c05980 - Uncharacterized protein conserved in bacteria, at 611,738 to 612,316
_c05980
PGA1_c05990: PGA1_c05990 - formate--tetrahydrofolate ligase Fhs, at 612,539 to 614,215
_c05990
Position (kb) 611
612
613 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 611.466 kb on - strand at 611.594 kb on + strand at 611.594 kb on + strand at 611.625 kb on + strand at 611.670 kb on + strand at 611.683 kb on + strand at 611.996 kb on + strand, within PGA1_c05980 at 612.047 kb on - strand, within PGA1_c05980 at 612.144 kb on + strand, within PGA1_c05980 at 612.235 kb on - strand, within PGA1_c05980 at 612.237 kb on + strand, within PGA1_c05980 at 612.240 kb on - strand, within PGA1_c05980 at 612.246 kb on + strand, within PGA1_c05980 at 612.264 kb on - strand at 612.330 kb on - strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.396 kb on + strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.404 kb on - strand at 612.498 kb on + strand at 612.542 kb on + strand at 612.575 kb on + strand at 612.575 kb on + strand at 612.575 kb on + strand at 612.575 kb on + strand at 612.583 kb on - strand at 612.662 kb on - strand at 612.773 kb on + strand, within PGA1_c05990 at 612.931 kb on - strand, within PGA1_c05990 at 613.096 kb on + strand, within PGA1_c05990 at 613.139 kb on - strand, within PGA1_c05990 at 613.140 kb on + strand, within PGA1_c05990 at 613.176 kb on - strand, within PGA1_c05990 at 613.195 kb on + strand, within PGA1_c05990 at 613.293 kb on - strand, within PGA1_c05990 at 613.312 kb on + strand, within PGA1_c05990
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 6 mM remove 611,466 - +0.9 611,594 + -0.2 611,594 + +2.9 611,625 + +1.8 611,670 + +0.2 611,683 + +0.7 611,996 + PGA1_c05980 0.45 +1.0 612,047 - PGA1_c05980 0.53 +0.6 612,144 + PGA1_c05980 0.70 +0.9 612,235 - PGA1_c05980 0.86 +2.0 612,237 + PGA1_c05980 0.86 +1.9 612,240 - PGA1_c05980 0.87 +1.1 612,246 + PGA1_c05980 0.88 +0.1 612,264 - +1.0 612,330 - +1.5 612,396 + +4.2 612,396 + +3.1 612,396 + +1.0 612,396 + +2.7 612,396 + +1.9 612,396 + +2.8 612,396 + +2.6 612,396 + +0.2 612,396 + -0.2 612,404 - +1.7 612,404 - +3.9 612,404 - +1.4 612,404 - +0.7 612,404 - +1.1 612,404 - +1.4 612,404 - +1.3 612,404 - +2.0 612,404 - +1.8 612,498 + +3.0 612,542 + +4.1 612,575 + +2.9 612,575 + +2.2 612,575 + +4.6 612,575 + +2.0 612,583 - +1.2 612,662 - +2.3 612,773 + PGA1_c05990 0.14 +4.4 612,931 - PGA1_c05990 0.23 -0.3 613,096 + PGA1_c05990 0.33 +4.1 613,139 - PGA1_c05990 0.36 +2.7 613,140 + PGA1_c05990 0.36 +1.9 613,176 - PGA1_c05990 0.38 +3.4 613,195 + PGA1_c05990 0.39 +2.6 613,293 - PGA1_c05990 0.45 +3.2 613,312 + PGA1_c05990 0.46 -2.1
Or see this region's nucleotide sequence