Experiment: m.b. nitrite 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05760 and PGA1_c05770 overlap by 4 nucleotides PGA1_c05770 and PGA1_c05780 are separated by 183 nucleotides PGA1_c05780 and PGA1_c05790 are separated by 148 nucleotides
PGA1_c05760: PGA1_c05760 - putative tyrosine recombinase XerC, at 589,712 to 590,647
_c05760
PGA1_c05770: PGA1_c05770 - Uncharacterized protein conserved in bacteria, at 590,644 to 591,351
_c05770
PGA1_c05780: PGA1_c05780 - transaldolase Tal, at 591,535 to 592,188
_c05780
PGA1_c05790: PGA1_c05790 - primosomal protein N, at 592,337 to 594,532
_c05790
Position (kb) 590
591
592 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 589.669 kb on - strand at 589.669 kb on - strand at 589.706 kb on - strand at 589.708 kb on + strand at 589.708 kb on + strand at 589.708 kb on + strand at 589.716 kb on - strand at 589.716 kb on - strand at 589.716 kb on - strand at 589.716 kb on - strand at 589.770 kb on + strand at 589.770 kb on + strand at 589.778 kb on - strand at 589.778 kb on - strand at 589.961 kb on + strand, within PGA1_c05760 at 590.062 kb on - strand, within PGA1_c05760 at 590.124 kb on - strand, within PGA1_c05760 at 590.227 kb on - strand, within PGA1_c05760 at 590.331 kb on - strand, within PGA1_c05760 at 590.467 kb on + strand, within PGA1_c05760 at 590.469 kb on + strand, within PGA1_c05760 at 590.549 kb on + strand, within PGA1_c05760 at 590.557 kb on - strand at 590.564 kb on - strand at 590.705 kb on + strand at 590.713 kb on - strand at 590.949 kb on - strand, within PGA1_c05770 at 590.956 kb on + strand, within PGA1_c05770 at 590.958 kb on + strand, within PGA1_c05770 at 590.971 kb on - strand, within PGA1_c05770 at 590.992 kb on - strand, within PGA1_c05770 at 591.038 kb on + strand, within PGA1_c05770 at 591.038 kb on + strand, within PGA1_c05770 at 591.038 kb on + strand, within PGA1_c05770 at 591.085 kb on + strand, within PGA1_c05770 at 591.093 kb on - strand, within PGA1_c05770 at 591.110 kb on - strand, within PGA1_c05770 at 591.243 kb on + strand, within PGA1_c05770 at 591.311 kb on + strand at 591.352 kb on - strand at 591.365 kb on - strand at 591.368 kb on + strand at 591.368 kb on + strand at 591.387 kb on + strand at 591.397 kb on - strand at 591.452 kb on + strand at 591.457 kb on + strand at 591.457 kb on + strand at 591.460 kb on - strand at 591.460 kb on - strand at 591.460 kb on - strand at 591.460 kb on - strand at 591.465 kb on - strand at 591.465 kb on - strand at 591.516 kb on - strand at 592.217 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 6 mM remove 589,669 - +3.0 589,669 - +0.1 589,706 - +1.3 589,708 + -2.7 589,708 + +0.8 589,708 + -3.1 589,716 - -0.1 589,716 - +0.1 589,716 - -1.8 589,716 - -1.1 589,770 + +1.5 589,770 + -2.5 589,778 - +1.6 589,778 - -1.6 589,961 + PGA1_c05760 0.27 -2.1 590,062 - PGA1_c05760 0.37 -1.0 590,124 - PGA1_c05760 0.44 -0.2 590,227 - PGA1_c05760 0.55 -3.5 590,331 - PGA1_c05760 0.66 +0.5 590,467 + PGA1_c05760 0.81 +1.2 590,469 + PGA1_c05760 0.81 -2.3 590,549 + PGA1_c05760 0.89 -2.5 590,557 - -0.9 590,564 - -3.4 590,705 + +0.6 590,713 - -1.4 590,949 - PGA1_c05770 0.43 -2.1 590,956 + PGA1_c05770 0.44 -2.1 590,958 + PGA1_c05770 0.44 -3.2 590,971 - PGA1_c05770 0.46 +1.8 590,992 - PGA1_c05770 0.49 -2.4 591,038 + PGA1_c05770 0.56 -1.3 591,038 + PGA1_c05770 0.56 -0.2 591,038 + PGA1_c05770 0.56 -1.3 591,085 + PGA1_c05770 0.62 -2.7 591,093 - PGA1_c05770 0.63 +0.3 591,110 - PGA1_c05770 0.66 -1.4 591,243 + PGA1_c05770 0.85 -0.8 591,311 + -2.0 591,352 - +0.4 591,365 - +0.2 591,368 + -0.8 591,368 + -0.9 591,387 + +0.7 591,397 - +1.4 591,452 + +2.2 591,457 + -0.3 591,457 + -1.4 591,460 - +0.5 591,460 - +1.4 591,460 - +1.3 591,460 - +0.7 591,465 - +1.2 591,465 - +0.0 591,516 - -0.6 592,217 - -2.1
Or see this region's nucleotide sequence