Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05150

Experiment: m.b. nitrite 6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05140 and PGA1_c05150 are separated by 167 nucleotidesPGA1_c05150 and PGA1_c05160 are separated by 144 nucleotides PGA1_c05140: PGA1_c05140 - D-amino acid dehydrogenase small subunit, at 506,942 to 508,192 _c05140 PGA1_c05150: PGA1_c05150 - chemoreceptor McpA, at 508,360 to 510,642 _c05150 PGA1_c05160: PGA1_c05160 - peptidase M56-like protein, at 510,787 to 511,938 _c05160 Position (kb) 508 509 510 511Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 507.457 kb on + strand, within PGA1_c05140at 507.457 kb on + strand, within PGA1_c05140at 507.457 kb on + strand, within PGA1_c05140at 507.465 kb on - strand, within PGA1_c05140at 507.518 kb on + strand, within PGA1_c05140at 507.525 kb on + strand, within PGA1_c05140at 507.528 kb on - strand, within PGA1_c05140at 507.528 kb on - strand, within PGA1_c05140at 507.533 kb on - strand, within PGA1_c05140at 507.602 kb on + strand, within PGA1_c05140at 507.620 kb on - strand, within PGA1_c05140at 507.647 kb on + strand, within PGA1_c05140at 507.656 kb on + strand, within PGA1_c05140at 507.727 kb on + strand, within PGA1_c05140at 507.734 kb on + strand, within PGA1_c05140at 507.806 kb on - strand, within PGA1_c05140at 507.806 kb on - strand, within PGA1_c05140at 507.806 kb on - strand, within PGA1_c05140at 507.815 kb on + strand, within PGA1_c05140at 507.815 kb on + strand, within PGA1_c05140at 507.869 kb on - strand, within PGA1_c05140at 507.871 kb on + strand, within PGA1_c05140at 507.905 kb on - strand, within PGA1_c05140at 507.955 kb on + strand, within PGA1_c05140at 507.955 kb on + strand, within PGA1_c05140at 507.963 kb on - strand, within PGA1_c05140at 507.965 kb on + strand, within PGA1_c05140at 507.975 kb on + strand, within PGA1_c05140at 508.007 kb on - strand, within PGA1_c05140at 508.064 kb on + strand, within PGA1_c05140at 508.100 kb on - strandat 508.123 kb on + strandat 508.151 kb on - strandat 508.204 kb on + strandat 508.205 kb on + strandat 508.212 kb on + strandat 508.233 kb on + strandat 508.233 kb on + strandat 508.233 kb on + strandat 508.233 kb on + strandat 508.241 kb on - strandat 508.306 kb on + strandat 508.344 kb on + strandat 508.352 kb on - strandat 508.352 kb on - strandat 508.354 kb on + strandat 508.407 kb on + strandat 508.421 kb on - strandat 508.421 kb on - strandat 508.421 kb on - strandat 508.422 kb on + strandat 508.422 kb on + strandat 508.469 kb on - strandat 508.505 kb on + strandat 508.505 kb on + strandat 508.520 kb on - strandat 508.589 kb on + strand, within PGA1_c05150at 508.742 kb on - strand, within PGA1_c05150at 508.752 kb on - strand, within PGA1_c05150at 508.800 kb on + strand, within PGA1_c05150at 508.808 kb on - strand, within PGA1_c05150at 508.808 kb on - strand, within PGA1_c05150at 508.825 kb on + strand, within PGA1_c05150at 508.843 kb on - strand, within PGA1_c05150at 508.843 kb on - strand, within PGA1_c05150at 508.848 kb on + strand, within PGA1_c05150at 508.856 kb on - strand, within PGA1_c05150at 508.858 kb on + strand, within PGA1_c05150at 508.866 kb on - strand, within PGA1_c05150at 508.924 kb on - strand, within PGA1_c05150at 508.924 kb on - strand, within PGA1_c05150at 508.935 kb on - strand, within PGA1_c05150at 508.937 kb on - strand, within PGA1_c05150at 508.937 kb on - strand, within PGA1_c05150at 508.962 kb on + strand, within PGA1_c05150at 508.962 kb on + strand, within PGA1_c05150at 508.962 kb on + strand, within PGA1_c05150at 508.962 kb on + strand, within PGA1_c05150at 508.962 kb on + strand, within PGA1_c05150at 508.962 kb on + strand, within PGA1_c05150at 508.988 kb on + strand, within PGA1_c05150at 508.991 kb on + strand, within PGA1_c05150at 509.026 kb on - strand, within PGA1_c05150at 509.071 kb on + strand, within PGA1_c05150at 509.076 kb on + strand, within PGA1_c05150at 509.079 kb on - strand, within PGA1_c05150at 509.084 kb on - strand, within PGA1_c05150at 509.084 kb on - strand, within PGA1_c05150at 509.084 kb on - strand, within PGA1_c05150at 509.174 kb on + strand, within PGA1_c05150at 509.182 kb on - strand, within PGA1_c05150at 509.184 kb on + strand, within PGA1_c05150at 509.232 kb on + strand, within PGA1_c05150at 509.254 kb on - strand, within PGA1_c05150at 509.265 kb on + strand, within PGA1_c05150at 509.306 kb on - strand, within PGA1_c05150at 509.459 kb on - strand, within PGA1_c05150at 509.469 kb on + strand, within PGA1_c05150at 509.487 kb on - strand, within PGA1_c05150at 509.488 kb on - strand, within PGA1_c05150at 509.488 kb on - strand, within PGA1_c05150at 509.588 kb on + strand, within PGA1_c05150at 509.716 kb on + strand, within PGA1_c05150at 509.773 kb on + strand, within PGA1_c05150at 509.825 kb on - strand, within PGA1_c05150at 509.847 kb on + strand, within PGA1_c05150at 509.855 kb on - strand, within PGA1_c05150at 509.875 kb on - strand, within PGA1_c05150at 509.875 kb on - strand, within PGA1_c05150at 509.988 kb on + strand, within PGA1_c05150at 510.008 kb on + strand, within PGA1_c05150at 510.008 kb on + strand, within PGA1_c05150at 510.020 kb on - strand, within PGA1_c05150at 510.044 kb on + strand, within PGA1_c05150at 510.052 kb on - strand, within PGA1_c05150at 510.157 kb on + strand, within PGA1_c05150at 510.163 kb on - strand, within PGA1_c05150at 510.217 kb on - strand, within PGA1_c05150at 510.217 kb on - strand, within PGA1_c05150at 510.258 kb on + strand, within PGA1_c05150at 510.354 kb on + strand, within PGA1_c05150at 510.355 kb on + strand, within PGA1_c05150at 510.373 kb on - strand, within PGA1_c05150at 510.445 kb on - strandat 510.463 kb on - strandat 510.544 kb on - strandat 510.602 kb on + strandat 510.633 kb on - strandat 510.643 kb on + strandat 510.651 kb on - strandat 510.686 kb on + strandat 510.690 kb on - strandat 510.849 kb on - strandat 510.866 kb on + strandat 510.957 kb on - strand, within PGA1_c05160at 510.967 kb on - strand, within PGA1_c05160at 510.992 kb on - strand, within PGA1_c05160at 511.030 kb on - strand, within PGA1_c05160at 511.193 kb on - strand, within PGA1_c05160at 511.193 kb on - strand, within PGA1_c05160at 511.381 kb on - strand, within PGA1_c05160at 511.416 kb on - strand, within PGA1_c05160at 511.479 kb on - strand, within PGA1_c05160at 511.479 kb on - strand, within PGA1_c05160at 511.510 kb on - strand, within PGA1_c05160at 511.567 kb on - strand, within PGA1_c05160at 511.603 kb on - strand, within PGA1_c05160at 511.638 kb on + strand, within PGA1_c05160at 511.638 kb on + strand, within PGA1_c05160at 511.638 kb on + strand, within PGA1_c05160

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 6 mM
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507,457 + PGA1_c05140 0.41 -0.7
507,457 + PGA1_c05140 0.41 -1.3
507,457 + PGA1_c05140 0.41 -2.8
507,465 - PGA1_c05140 0.42 +0.9
507,518 + PGA1_c05140 0.46 +0.8
507,525 + PGA1_c05140 0.47 -2.1
507,528 - PGA1_c05140 0.47 +0.4
507,528 - PGA1_c05140 0.47 -1.0
507,533 - PGA1_c05140 0.47 -0.6
507,602 + PGA1_c05140 0.53 +1.1
507,620 - PGA1_c05140 0.54 +1.7
507,647 + PGA1_c05140 0.56 -1.1
507,656 + PGA1_c05140 0.57 -0.3
507,727 + PGA1_c05140 0.63 -2.3
507,734 + PGA1_c05140 0.63 -1.8
507,806 - PGA1_c05140 0.69 -0.0
507,806 - PGA1_c05140 0.69 +0.3
507,806 - PGA1_c05140 0.69 -0.4
507,815 + PGA1_c05140 0.70 -1.2
507,815 + PGA1_c05140 0.70 -0.1
507,869 - PGA1_c05140 0.74 +2.4
507,871 + PGA1_c05140 0.74 +0.1
507,905 - PGA1_c05140 0.77 +1.0
507,955 + PGA1_c05140 0.81 +0.5
507,955 + PGA1_c05140 0.81 +2.3
507,963 - PGA1_c05140 0.82 -0.2
507,965 + PGA1_c05140 0.82 +2.1
507,975 + PGA1_c05140 0.83 +0.8
508,007 - PGA1_c05140 0.85 -2.4
508,064 + PGA1_c05140 0.90 +1.0
508,100 - +1.1
508,123 + -1.3
508,151 - -0.9
508,204 + -0.7
508,205 + +1.0
508,212 + +0.6
508,233 + +1.2
508,233 + -0.9
508,233 + -0.4
508,233 + -2.9
508,241 - +0.4
508,306 + +0.9
508,344 + -0.2
508,352 - -0.6
508,352 - +0.5
508,354 + -0.1
508,407 + +0.5
508,421 - -0.2
508,421 - -0.6
508,421 - -0.4
508,422 + +0.1
508,422 + +0.9
508,469 - +0.3
508,505 + -0.3
508,505 + +2.6
508,520 - +0.5
508,589 + PGA1_c05150 0.10 +1.4
508,742 - PGA1_c05150 0.17 -0.9
508,752 - PGA1_c05150 0.17 -1.1
508,800 + PGA1_c05150 0.19 +0.5
508,808 - PGA1_c05150 0.20 -0.8
508,808 - PGA1_c05150 0.20 +0.0
508,825 + PGA1_c05150 0.20 -2.0
508,843 - PGA1_c05150 0.21 +1.3
508,843 - PGA1_c05150 0.21 -1.4
508,848 + PGA1_c05150 0.21 -0.4
508,856 - PGA1_c05150 0.22 -1.0
508,858 + PGA1_c05150 0.22 -0.9
508,866 - PGA1_c05150 0.22 +0.1
508,924 - PGA1_c05150 0.25 -0.7
508,924 - PGA1_c05150 0.25 +1.4
508,935 - PGA1_c05150 0.25 -2.1
508,937 - PGA1_c05150 0.25 -1.1
508,937 - PGA1_c05150 0.25 +0.1
508,962 + PGA1_c05150 0.26 -0.5
508,962 + PGA1_c05150 0.26 -3.4
508,962 + PGA1_c05150 0.26 -2.5
508,962 + PGA1_c05150 0.26 -1.4
508,962 + PGA1_c05150 0.26 -0.4
508,962 + PGA1_c05150 0.26 -0.1
508,988 + PGA1_c05150 0.28 +1.8
508,991 + PGA1_c05150 0.28 +0.3
509,026 - PGA1_c05150 0.29 +1.4
509,071 + PGA1_c05150 0.31 +1.2
509,076 + PGA1_c05150 0.31 -1.7
509,079 - PGA1_c05150 0.31 +0.6
509,084 - PGA1_c05150 0.32 +0.1
509,084 - PGA1_c05150 0.32 -0.4
509,084 - PGA1_c05150 0.32 -1.0
509,174 + PGA1_c05150 0.36 -0.9
509,182 - PGA1_c05150 0.36 -2.3
509,184 + PGA1_c05150 0.36 -2.1
509,232 + PGA1_c05150 0.38 +3.0
509,254 - PGA1_c05150 0.39 +0.2
509,265 + PGA1_c05150 0.40 +0.6
509,306 - PGA1_c05150 0.41 +0.5
509,459 - PGA1_c05150 0.48 +0.4
509,469 + PGA1_c05150 0.49 -0.3
509,487 - PGA1_c05150 0.49 +0.2
509,488 - PGA1_c05150 0.49 -0.6
509,488 - PGA1_c05150 0.49 +2.4
509,588 + PGA1_c05150 0.54 +0.0
509,716 + PGA1_c05150 0.59 -1.1
509,773 + PGA1_c05150 0.62 +0.6
509,825 - PGA1_c05150 0.64 +0.1
509,847 + PGA1_c05150 0.65 -0.4
509,855 - PGA1_c05150 0.65 +2.7
509,875 - PGA1_c05150 0.66 -3.3
509,875 - PGA1_c05150 0.66 +2.0
509,988 + PGA1_c05150 0.71 -1.2
510,008 + PGA1_c05150 0.72 -1.5
510,008 + PGA1_c05150 0.72 -0.6
510,020 - PGA1_c05150 0.73 +0.5
510,044 + PGA1_c05150 0.74 -0.4
510,052 - PGA1_c05150 0.74 +1.0
510,157 + PGA1_c05150 0.79 -0.8
510,163 - PGA1_c05150 0.79 +0.8
510,217 - PGA1_c05150 0.81 -2.8
510,217 - PGA1_c05150 0.81 -0.3
510,258 + PGA1_c05150 0.83 +0.3
510,354 + PGA1_c05150 0.87 +0.6
510,355 + PGA1_c05150 0.87 -1.8
510,373 - PGA1_c05150 0.88 -0.9
510,445 - +0.3
510,463 - +0.5
510,544 - -1.1
510,602 + +1.1
510,633 - -0.4
510,643 + -2.6
510,651 - -0.1
510,686 + +0.8
510,690 - -2.3
510,849 - -0.6
510,866 + -0.7
510,957 - PGA1_c05160 0.15 -2.9
510,967 - PGA1_c05160 0.16 -0.5
510,992 - PGA1_c05160 0.18 +1.3
511,030 - PGA1_c05160 0.21 +1.0
511,193 - PGA1_c05160 0.35 -1.1
511,193 - PGA1_c05160 0.35 -0.6
511,381 - PGA1_c05160 0.52 +0.8
511,416 - PGA1_c05160 0.55 +0.7
511,479 - PGA1_c05160 0.60 +2.4
511,479 - PGA1_c05160 0.60 +1.7
511,510 - PGA1_c05160 0.63 +2.5
511,567 - PGA1_c05160 0.68 +0.9
511,603 - PGA1_c05160 0.71 +1.7
511,638 + PGA1_c05160 0.74 +1.3
511,638 + PGA1_c05160 0.74 -2.1
511,638 + PGA1_c05160 0.74 +1.0

Or see this region's nucleotide sequence