Experiment: m.b. acetate 87.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3912 and HP15_3913 overlap by 37 nucleotides HP15_3913 and HP15_3914 are separated by 73 nucleotides
HP15_3912: HP15_3912 - diguanylate cyclase, at 4,140,503 to 4,141,513
_3912
HP15_3913: HP15_3913 - multidrug resistance protein NorM, at 4,141,477 to 4,142,898
_3913
HP15_3914: HP15_3914 - carboxylate/amino acid/amine transporter, at 4,142,972 to 4,143,856
_3914
Position (kb)
4141
4142
4143 Strain fitness (log2 ratio)
-1
0
1 at 4140.514 kb on + strand at 4140.558 kb on - strand at 4140.610 kb on - strand, within HP15_3912 at 4140.657 kb on + strand, within HP15_3912 at 4140.662 kb on + strand, within HP15_3912 at 4140.665 kb on - strand, within HP15_3912 at 4140.670 kb on - strand, within HP15_3912 at 4140.670 kb on - strand, within HP15_3912 at 4140.675 kb on - strand, within HP15_3912 at 4140.773 kb on - strand, within HP15_3912 at 4140.778 kb on - strand, within HP15_3912 at 4140.788 kb on - strand, within HP15_3912 at 4140.901 kb on - strand, within HP15_3912 at 4141.085 kb on + strand, within HP15_3912 at 4141.140 kb on - strand, within HP15_3912 at 4141.212 kb on + strand, within HP15_3912 at 4141.212 kb on + strand, within HP15_3912 at 4141.220 kb on - strand, within HP15_3912 at 4141.220 kb on - strand, within HP15_3912 at 4141.313 kb on + strand, within HP15_3912 at 4141.373 kb on - strand, within HP15_3912 at 4141.435 kb on - strand at 4141.448 kb on + strand at 4141.475 kb on + strand at 4141.567 kb on + strand at 4141.567 kb on + strand at 4141.636 kb on + strand, within HP15_3913 at 4141.643 kb on + strand, within HP15_3913 at 4141.648 kb on + strand, within HP15_3913 at 4141.648 kb on + strand, within HP15_3913 at 4141.649 kb on - strand, within HP15_3913 at 4141.649 kb on - strand, within HP15_3913 at 4141.780 kb on + strand, within HP15_3913 at 4141.788 kb on - strand, within HP15_3913 at 4141.796 kb on + strand, within HP15_3913 at 4141.806 kb on + strand, within HP15_3913 at 4141.822 kb on + strand, within HP15_3913 at 4141.828 kb on - strand, within HP15_3913 at 4141.830 kb on - strand, within HP15_3913 at 4142.364 kb on - strand, within HP15_3913 at 4142.387 kb on - strand, within HP15_3913 at 4142.478 kb on - strand, within HP15_3913 at 4142.489 kb on + strand, within HP15_3913 at 4142.497 kb on - strand, within HP15_3913 at 4142.503 kb on - strand, within HP15_3913 at 4142.614 kb on + strand, within HP15_3913 at 4142.616 kb on + strand, within HP15_3913 at 4142.817 kb on - strand at 4142.818 kb on + strand at 4142.831 kb on - strand at 4142.843 kb on + strand at 4142.888 kb on + strand at 4142.910 kb on - strand at 4142.910 kb on - strand at 4143.099 kb on + strand, within HP15_3914 at 4143.154 kb on - strand, within HP15_3914 at 4143.207 kb on - strand, within HP15_3914 at 4143.234 kb on + strand, within HP15_3914 at 4143.242 kb on + strand, within HP15_3914 at 4143.273 kb on + strand, within HP15_3914 at 4143.281 kb on - strand, within HP15_3914 at 4143.480 kb on - strand, within HP15_3914 at 4143.593 kb on - strand, within HP15_3914 at 4143.627 kb on + strand, within HP15_3914 at 4143.868 kb on + strand at 4143.868 kb on + strand at 4143.876 kb on - strand at 4143.876 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. acetate 87.5 mM remove 4,140,514 + -0.8 4,140,558 - -0.3 4,140,610 - HP15_3912 0.11 -0.3 4,140,657 + HP15_3912 0.15 -0.0 4,140,662 + HP15_3912 0.16 -1.3 4,140,665 - HP15_3912 0.16 +0.1 4,140,670 - HP15_3912 0.17 +1.4 4,140,670 - HP15_3912 0.17 +1.1 4,140,675 - HP15_3912 0.17 -0.5 4,140,773 - HP15_3912 0.27 +0.2 4,140,778 - HP15_3912 0.27 -0.2 4,140,788 - HP15_3912 0.28 -0.2 4,140,901 - HP15_3912 0.39 -0.3 4,141,085 + HP15_3912 0.58 -0.2 4,141,140 - HP15_3912 0.63 +0.8 4,141,212 + HP15_3912 0.70 -0.1 4,141,212 + HP15_3912 0.70 -0.0 4,141,220 - HP15_3912 0.71 -0.2 4,141,220 - HP15_3912 0.71 +0.1 4,141,313 + HP15_3912 0.80 -0.5 4,141,373 - HP15_3912 0.86 -0.4 4,141,435 - +0.4 4,141,448 + +0.0 4,141,475 + -0.4 4,141,567 + -0.6 4,141,567 + -0.6 4,141,636 + HP15_3913 0.11 +0.5 4,141,643 + HP15_3913 0.12 -0.1 4,141,648 + HP15_3913 0.12 +0.0 4,141,648 + HP15_3913 0.12 +0.7 4,141,649 - HP15_3913 0.12 -0.5 4,141,649 - HP15_3913 0.12 +1.4 4,141,780 + HP15_3913 0.21 +0.8 4,141,788 - HP15_3913 0.22 +0.0 4,141,796 + HP15_3913 0.22 -0.1 4,141,806 + HP15_3913 0.23 -1.4 4,141,822 + HP15_3913 0.24 +0.6 4,141,828 - HP15_3913 0.25 +0.8 4,141,830 - HP15_3913 0.25 -0.4 4,142,364 - HP15_3913 0.62 -0.0 4,142,387 - HP15_3913 0.64 -0.4 4,142,478 - HP15_3913 0.70 -0.4 4,142,489 + HP15_3913 0.71 -0.6 4,142,497 - HP15_3913 0.72 -0.3 4,142,503 - HP15_3913 0.72 +0.8 4,142,614 + HP15_3913 0.80 +1.2 4,142,616 + HP15_3913 0.80 -0.5 4,142,817 - -0.1 4,142,818 + +0.4 4,142,831 - -0.1 4,142,843 + +1.1 4,142,888 + +0.5 4,142,910 - -0.5 4,142,910 - -0.2 4,143,099 + HP15_3914 0.14 +0.8 4,143,154 - HP15_3914 0.21 -0.5 4,143,207 - HP15_3914 0.27 -0.0 4,143,234 + HP15_3914 0.30 -0.4 4,143,242 + HP15_3914 0.31 +1.2 4,143,273 + HP15_3914 0.34 -0.6 4,143,281 - HP15_3914 0.35 +0.8 4,143,480 - HP15_3914 0.57 +0.6 4,143,593 - HP15_3914 0.70 +1.0 4,143,627 + HP15_3914 0.74 +1.4 4,143,868 + -0.1 4,143,868 + -0.4 4,143,876 - -0.3 4,143,876 - +0.1
Or see this region's nucleotide sequence