Strain Fitness in Marinobacter adhaerens HP15 around HP15_3913

Experiment: m.b. acetate 87.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3912 and HP15_3913 overlap by 37 nucleotidesHP15_3913 and HP15_3914 are separated by 73 nucleotides HP15_3912: HP15_3912 - diguanylate cyclase, at 4,140,503 to 4,141,513 _3912 HP15_3913: HP15_3913 - multidrug resistance protein NorM, at 4,141,477 to 4,142,898 _3913 HP15_3914: HP15_3914 - carboxylate/amino acid/amine transporter, at 4,142,972 to 4,143,856 _3914 Position (kb) 4141 4142 4143Strain fitness (log2 ratio) -1 0 1at 4140.514 kb on + strandat 4140.558 kb on - strandat 4140.610 kb on - strand, within HP15_3912at 4140.657 kb on + strand, within HP15_3912at 4140.662 kb on + strand, within HP15_3912at 4140.665 kb on - strand, within HP15_3912at 4140.670 kb on - strand, within HP15_3912at 4140.670 kb on - strand, within HP15_3912at 4140.675 kb on - strand, within HP15_3912at 4140.773 kb on - strand, within HP15_3912at 4140.778 kb on - strand, within HP15_3912at 4140.788 kb on - strand, within HP15_3912at 4140.901 kb on - strand, within HP15_3912at 4141.085 kb on + strand, within HP15_3912at 4141.140 kb on - strand, within HP15_3912at 4141.212 kb on + strand, within HP15_3912at 4141.212 kb on + strand, within HP15_3912at 4141.220 kb on - strand, within HP15_3912at 4141.220 kb on - strand, within HP15_3912at 4141.313 kb on + strand, within HP15_3912at 4141.373 kb on - strand, within HP15_3912at 4141.435 kb on - strandat 4141.448 kb on + strandat 4141.475 kb on + strandat 4141.567 kb on + strandat 4141.567 kb on + strandat 4141.636 kb on + strand, within HP15_3913at 4141.643 kb on + strand, within HP15_3913at 4141.648 kb on + strand, within HP15_3913at 4141.648 kb on + strand, within HP15_3913at 4141.649 kb on - strand, within HP15_3913at 4141.649 kb on - strand, within HP15_3913at 4141.780 kb on + strand, within HP15_3913at 4141.788 kb on - strand, within HP15_3913at 4141.796 kb on + strand, within HP15_3913at 4141.806 kb on + strand, within HP15_3913at 4141.822 kb on + strand, within HP15_3913at 4141.828 kb on - strand, within HP15_3913at 4141.830 kb on - strand, within HP15_3913at 4142.364 kb on - strand, within HP15_3913at 4142.387 kb on - strand, within HP15_3913at 4142.478 kb on - strand, within HP15_3913at 4142.489 kb on + strand, within HP15_3913at 4142.497 kb on - strand, within HP15_3913at 4142.503 kb on - strand, within HP15_3913at 4142.614 kb on + strand, within HP15_3913at 4142.616 kb on + strand, within HP15_3913at 4142.817 kb on - strandat 4142.818 kb on + strandat 4142.831 kb on - strandat 4142.843 kb on + strandat 4142.888 kb on + strandat 4142.910 kb on - strandat 4142.910 kb on - strandat 4143.099 kb on + strand, within HP15_3914at 4143.154 kb on - strand, within HP15_3914at 4143.207 kb on - strand, within HP15_3914at 4143.234 kb on + strand, within HP15_3914at 4143.242 kb on + strand, within HP15_3914at 4143.273 kb on + strand, within HP15_3914at 4143.281 kb on - strand, within HP15_3914at 4143.480 kb on - strand, within HP15_3914at 4143.593 kb on - strand, within HP15_3914at 4143.627 kb on + strand, within HP15_3914at 4143.868 kb on + strandat 4143.868 kb on + strandat 4143.876 kb on - strandat 4143.876 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. acetate 87.5 mM
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4,140,514 + -0.8
4,140,558 - -0.3
4,140,610 - HP15_3912 0.11 -0.3
4,140,657 + HP15_3912 0.15 -0.0
4,140,662 + HP15_3912 0.16 -1.3
4,140,665 - HP15_3912 0.16 +0.1
4,140,670 - HP15_3912 0.17 +1.4
4,140,670 - HP15_3912 0.17 +1.1
4,140,675 - HP15_3912 0.17 -0.5
4,140,773 - HP15_3912 0.27 +0.2
4,140,778 - HP15_3912 0.27 -0.2
4,140,788 - HP15_3912 0.28 -0.2
4,140,901 - HP15_3912 0.39 -0.3
4,141,085 + HP15_3912 0.58 -0.2
4,141,140 - HP15_3912 0.63 +0.8
4,141,212 + HP15_3912 0.70 -0.1
4,141,212 + HP15_3912 0.70 -0.0
4,141,220 - HP15_3912 0.71 -0.2
4,141,220 - HP15_3912 0.71 +0.1
4,141,313 + HP15_3912 0.80 -0.5
4,141,373 - HP15_3912 0.86 -0.4
4,141,435 - +0.4
4,141,448 + +0.0
4,141,475 + -0.4
4,141,567 + -0.6
4,141,567 + -0.6
4,141,636 + HP15_3913 0.11 +0.5
4,141,643 + HP15_3913 0.12 -0.1
4,141,648 + HP15_3913 0.12 +0.0
4,141,648 + HP15_3913 0.12 +0.7
4,141,649 - HP15_3913 0.12 -0.5
4,141,649 - HP15_3913 0.12 +1.4
4,141,780 + HP15_3913 0.21 +0.8
4,141,788 - HP15_3913 0.22 +0.0
4,141,796 + HP15_3913 0.22 -0.1
4,141,806 + HP15_3913 0.23 -1.4
4,141,822 + HP15_3913 0.24 +0.6
4,141,828 - HP15_3913 0.25 +0.8
4,141,830 - HP15_3913 0.25 -0.4
4,142,364 - HP15_3913 0.62 -0.0
4,142,387 - HP15_3913 0.64 -0.4
4,142,478 - HP15_3913 0.70 -0.4
4,142,489 + HP15_3913 0.71 -0.6
4,142,497 - HP15_3913 0.72 -0.3
4,142,503 - HP15_3913 0.72 +0.8
4,142,614 + HP15_3913 0.80 +1.2
4,142,616 + HP15_3913 0.80 -0.5
4,142,817 - -0.1
4,142,818 + +0.4
4,142,831 - -0.1
4,142,843 + +1.1
4,142,888 + +0.5
4,142,910 - -0.5
4,142,910 - -0.2
4,143,099 + HP15_3914 0.14 +0.8
4,143,154 - HP15_3914 0.21 -0.5
4,143,207 - HP15_3914 0.27 -0.0
4,143,234 + HP15_3914 0.30 -0.4
4,143,242 + HP15_3914 0.31 +1.2
4,143,273 + HP15_3914 0.34 -0.6
4,143,281 - HP15_3914 0.35 +0.8
4,143,480 - HP15_3914 0.57 +0.6
4,143,593 - HP15_3914 0.70 +1.0
4,143,627 + HP15_3914 0.74 +1.4
4,143,868 + -0.1
4,143,868 + -0.4
4,143,876 - -0.3
4,143,876 - +0.1

Or see this region's nucleotide sequence