Experiment: m.b. nitrite 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04000 and PGA1_c04010 are separated by 162 nucleotides PGA1_c04010 and PGA1_c04020 are separated by 86 nucleotides PGA1_c04020 and PGA1_c04030 are separated by 126 nucleotides PGA1_c04030 and PGA1_c04040 are separated by 62 nucleotides
PGA1_c04000: PGA1_c04000 - nitrogen fixation protein nifU-like protein, at 386,678 to 387,241
_c04000
PGA1_c04010: PGA1_c04010 - putative universal stress protein, at 387,404 to 387,859
_c04010
PGA1_c04020: PGA1_c04020 - putative branched-chain-amino-acid aminotransferase, at 387,946 to 388,812
_c04020
PGA1_c04030: PGA1_c04030 - phenylacetic acid degradation protein paaA-like protein, at 388,939 to 389,706
_c04030
PGA1_c04040: PGA1_c04040 - phenylacetic acid degradation NADH oxidoreductase PaaE, at 389,769 to 390,842
_c04040
Position (kb) 387
388
389 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 387.259 kb on - strand at 387.259 kb on - strand at 387.259 kb on - strand at 387.259 kb on - strand at 387.341 kb on + strand at 387.349 kb on - strand at 387.349 kb on - strand at 387.349 kb on - strand at 387.349 kb on - strand at 387.381 kb on - strand at 387.514 kb on - strand, within PGA1_c04010 at 387.601 kb on - strand, within PGA1_c04010 at 387.629 kb on + strand, within PGA1_c04010 at 387.828 kb on + strand at 387.875 kb on - strand at 387.883 kb on - strand at 387.901 kb on + strand at 387.912 kb on + strand at 387.917 kb on - strand at 387.971 kb on + strand at 387.973 kb on - strand at 388.147 kb on - strand, within PGA1_c04020 at 388.212 kb on + strand, within PGA1_c04020 at 388.338 kb on + strand, within PGA1_c04020 at 388.373 kb on - strand, within PGA1_c04020 at 388.388 kb on - strand, within PGA1_c04020 at 388.422 kb on - strand, within PGA1_c04020 at 388.446 kb on + strand, within PGA1_c04020 at 388.446 kb on + strand, within PGA1_c04020 at 388.454 kb on - strand, within PGA1_c04020 at 388.502 kb on - strand, within PGA1_c04020 at 388.645 kb on - strand, within PGA1_c04020 at 388.665 kb on + strand, within PGA1_c04020 at 388.665 kb on + strand, within PGA1_c04020 at 388.665 kb on + strand, within PGA1_c04020 at 388.673 kb on - strand, within PGA1_c04020 at 388.688 kb on - strand, within PGA1_c04020 at 388.917 kb on - strand at 388.922 kb on - strand at 388.969 kb on - strand at 389.013 kb on + strand at 389.013 kb on + strand at 389.013 kb on + strand at 389.021 kb on - strand, within PGA1_c04030 at 389.021 kb on - strand, within PGA1_c04030 at 389.021 kb on - strand, within PGA1_c04030 at 389.033 kb on + strand, within PGA1_c04030 at 389.045 kb on + strand, within PGA1_c04030 at 389.064 kb on + strand, within PGA1_c04030 at 389.071 kb on + strand, within PGA1_c04030 at 389.168 kb on - strand, within PGA1_c04030 at 389.169 kb on - strand, within PGA1_c04030 at 389.194 kb on + strand, within PGA1_c04030 at 389.202 kb on - strand, within PGA1_c04030 at 389.202 kb on - strand, within PGA1_c04030 at 389.323 kb on - strand, within PGA1_c04030 at 389.343 kb on + strand, within PGA1_c04030 at 389.371 kb on + strand, within PGA1_c04030 at 389.379 kb on - strand, within PGA1_c04030 at 389.379 kb on - strand, within PGA1_c04030 at 389.390 kb on - strand, within PGA1_c04030 at 389.401 kb on - strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.408 kb on + strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.416 kb on - strand, within PGA1_c04030 at 389.456 kb on + strand, within PGA1_c04030 at 389.474 kb on + strand, within PGA1_c04030 at 389.516 kb on + strand, within PGA1_c04030 at 389.562 kb on + strand, within PGA1_c04030 at 389.619 kb on - strand, within PGA1_c04030 at 389.629 kb on - strand, within PGA1_c04030 at 389.648 kb on - strand at 389.717 kb on + strand at 389.723 kb on - strand at 389.725 kb on - strand at 389.806 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 6 mM remove 387,259 - +0.2 387,259 - -0.9 387,259 - -0.8 387,259 - +0.3 387,341 + -1.7 387,349 - +0.4 387,349 - -2.5 387,349 - -1.2 387,349 - +1.6 387,381 - -0.4 387,514 - PGA1_c04010 0.24 +3.4 387,601 - PGA1_c04010 0.43 +0.6 387,629 + PGA1_c04010 0.49 -0.6 387,828 + -1.2 387,875 - +0.7 387,883 - -1.1 387,901 + -1.9 387,912 + +0.5 387,917 - +1.1 387,971 + +0.2 387,973 - -2.4 388,147 - PGA1_c04020 0.23 +0.9 388,212 + PGA1_c04020 0.31 -0.8 388,338 + PGA1_c04020 0.45 +1.8 388,373 - PGA1_c04020 0.49 +2.6 388,388 - PGA1_c04020 0.51 +0.3 388,422 - PGA1_c04020 0.55 +1.6 388,446 + PGA1_c04020 0.58 +1.3 388,446 + PGA1_c04020 0.58 +0.7 388,454 - PGA1_c04020 0.59 -0.1 388,502 - PGA1_c04020 0.64 +0.1 388,645 - PGA1_c04020 0.81 -3.6 388,665 + PGA1_c04020 0.83 -0.2 388,665 + PGA1_c04020 0.83 +0.8 388,665 + PGA1_c04020 0.83 +1.0 388,673 - PGA1_c04020 0.84 -1.0 388,688 - PGA1_c04020 0.86 -2.2 388,917 - +1.3 388,922 - +1.5 388,969 - -0.0 389,013 + +0.5 389,013 + -0.0 389,013 + +0.4 389,021 - PGA1_c04030 0.11 +0.3 389,021 - PGA1_c04030 0.11 +0.1 389,021 - PGA1_c04030 0.11 +1.8 389,033 + PGA1_c04030 0.12 +0.3 389,045 + PGA1_c04030 0.14 -0.2 389,064 + PGA1_c04030 0.16 +0.9 389,071 + PGA1_c04030 0.17 -1.2 389,168 - PGA1_c04030 0.30 -0.5 389,169 - PGA1_c04030 0.30 +0.7 389,194 + PGA1_c04030 0.33 -1.0 389,202 - PGA1_c04030 0.34 +0.4 389,202 - PGA1_c04030 0.34 +0.0 389,323 - PGA1_c04030 0.50 +1.1 389,343 + PGA1_c04030 0.53 -0.7 389,371 + PGA1_c04030 0.56 -2.4 389,379 - PGA1_c04030 0.57 +0.3 389,379 - PGA1_c04030 0.57 -2.3 389,390 - PGA1_c04030 0.59 -1.9 389,401 - PGA1_c04030 0.60 +0.6 389,408 + PGA1_c04030 0.61 -0.9 389,408 + PGA1_c04030 0.61 -2.4 389,408 + PGA1_c04030 0.61 +0.6 389,408 + PGA1_c04030 0.61 +0.5 389,408 + PGA1_c04030 0.61 -0.7 389,408 + PGA1_c04030 0.61 +0.4 389,408 + PGA1_c04030 0.61 +1.4 389,408 + PGA1_c04030 0.61 -2.4 389,408 + PGA1_c04030 0.61 +1.1 389,408 + PGA1_c04030 0.61 +0.0 389,408 + PGA1_c04030 0.61 +0.0 389,408 + PGA1_c04030 0.61 +0.3 389,416 - PGA1_c04030 0.62 -0.2 389,416 - PGA1_c04030 0.62 +0.0 389,416 - PGA1_c04030 0.62 +0.1 389,416 - PGA1_c04030 0.62 +0.1 389,416 - PGA1_c04030 0.62 -1.7 389,416 - PGA1_c04030 0.62 -0.3 389,416 - PGA1_c04030 0.62 -0.4 389,416 - PGA1_c04030 0.62 -0.8 389,416 - PGA1_c04030 0.62 -0.7 389,416 - PGA1_c04030 0.62 +0.6 389,416 - PGA1_c04030 0.62 -0.7 389,416 - PGA1_c04030 0.62 +0.2 389,456 + PGA1_c04030 0.67 -1.8 389,474 + PGA1_c04030 0.70 -1.5 389,516 + PGA1_c04030 0.75 -2.7 389,562 + PGA1_c04030 0.81 -1.1 389,619 - PGA1_c04030 0.89 -1.7 389,629 - PGA1_c04030 0.90 -1.3 389,648 - +0.9 389,717 + -0.2 389,723 - -0.4 389,725 - -0.2 389,806 + -0.7
Or see this region's nucleotide sequence