Experiment: m.b. nitrite 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03980 and PGA1_c03990 are separated by 64 nucleotides PGA1_c03990 and PGA1_c04000 overlap by 11 nucleotides PGA1_c04000 and PGA1_c04010 are separated by 162 nucleotides PGA1_c04010 and PGA1_c04020 are separated by 86 nucleotides
PGA1_c03980: PGA1_c03980 - putative acetyltransferase, at 385,611 to 386,027
_c03980
PGA1_c03990: PGA1_c03990 - putative peptidase M22, at 386,092 to 386,688
_c03990
PGA1_c04000: PGA1_c04000 - nitrogen fixation protein nifU-like protein, at 386,678 to 387,241
_c04000
PGA1_c04010: PGA1_c04010 - putative universal stress protein, at 387,404 to 387,859
_c04010
PGA1_c04020: PGA1_c04020 - putative branched-chain-amino-acid aminotransferase, at 387,946 to 388,812
_c04020
Position (kb) 386
387
388 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 385.685 kb on + strand, within PGA1_c03980 at 385.693 kb on - strand, within PGA1_c03980 at 385.726 kb on + strand, within PGA1_c03980 at 385.836 kb on - strand, within PGA1_c03980 at 385.836 kb on - strand, within PGA1_c03980 at 385.838 kb on + strand, within PGA1_c03980 at 385.852 kb on + strand, within PGA1_c03980 at 385.858 kb on + strand, within PGA1_c03980 at 385.872 kb on + strand, within PGA1_c03980 at 385.934 kb on + strand, within PGA1_c03980 at 385.961 kb on - strand, within PGA1_c03980 at 386.021 kb on + strand at 386.024 kb on - strand at 386.071 kb on + strand at 386.073 kb on - strand at 387.259 kb on - strand at 387.259 kb on - strand at 387.259 kb on - strand at 387.259 kb on - strand at 387.341 kb on + strand at 387.349 kb on - strand at 387.349 kb on - strand at 387.349 kb on - strand at 387.349 kb on - strand at 387.381 kb on - strand at 387.514 kb on - strand, within PGA1_c04010 at 387.601 kb on - strand, within PGA1_c04010 at 387.629 kb on + strand, within PGA1_c04010 at 387.828 kb on + strand at 387.875 kb on - strand at 387.883 kb on - strand at 387.901 kb on + strand at 387.912 kb on + strand at 387.917 kb on - strand at 387.971 kb on + strand at 387.973 kb on - strand at 388.147 kb on - strand, within PGA1_c04020 at 388.212 kb on + strand, within PGA1_c04020
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 6 mM remove 385,685 + PGA1_c03980 0.18 +0.1 385,693 - PGA1_c03980 0.20 +0.3 385,726 + PGA1_c03980 0.28 -1.1 385,836 - PGA1_c03980 0.54 -0.2 385,836 - PGA1_c03980 0.54 -1.6 385,838 + PGA1_c03980 0.54 +0.8 385,852 + PGA1_c03980 0.58 -3.1 385,858 + PGA1_c03980 0.59 -0.2 385,872 + PGA1_c03980 0.63 -2.2 385,934 + PGA1_c03980 0.77 +0.5 385,961 - PGA1_c03980 0.84 +0.6 386,021 + -0.5 386,024 - -0.0 386,071 + -0.3 386,073 - -0.5 387,259 - +0.2 387,259 - -0.9 387,259 - -0.8 387,259 - +0.3 387,341 + -1.7 387,349 - +0.4 387,349 - -2.5 387,349 - -1.2 387,349 - +1.6 387,381 - -0.4 387,514 - PGA1_c04010 0.24 +3.4 387,601 - PGA1_c04010 0.43 +0.6 387,629 + PGA1_c04010 0.49 -0.6 387,828 + -1.2 387,875 - +0.7 387,883 - -1.1 387,901 + -1.9 387,912 + +0.5 387,917 - +1.1 387,971 + +0.2 387,973 - -2.4 388,147 - PGA1_c04020 0.23 +0.9 388,212 + PGA1_c04020 0.31 -0.8
Or see this region's nucleotide sequence