Experiment: m.b. nitrite 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03970 and PGA1_c03980 are separated by 129 nucleotides PGA1_c03980 and PGA1_c03990 are separated by 64 nucleotides PGA1_c03990 and PGA1_c04000 overlap by 11 nucleotides PGA1_c04000 and PGA1_c04010 are separated by 162 nucleotides
PGA1_c03970: PGA1_c03970 - putative lipoprotein, at 384,486 to 385,481
_c03970
PGA1_c03980: PGA1_c03980 - putative acetyltransferase, at 385,611 to 386,027
_c03980
PGA1_c03990: PGA1_c03990 - putative peptidase M22, at 386,092 to 386,688
_c03990
PGA1_c04000: PGA1_c04000 - nitrogen fixation protein nifU-like protein, at 386,678 to 387,241
_c04000
PGA1_c04010: PGA1_c04010 - putative universal stress protein, at 387,404 to 387,859
_c04010
Position (kb) 386
387 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 385.097 kb on - strand, within PGA1_c03970 at 385.133 kb on - strand, within PGA1_c03970 at 385.133 kb on - strand, within PGA1_c03970 at 385.278 kb on - strand, within PGA1_c03970 at 385.293 kb on - strand, within PGA1_c03970 at 385.325 kb on + strand, within PGA1_c03970 at 385.330 kb on + strand, within PGA1_c03970 at 385.330 kb on + strand, within PGA1_c03970 at 385.330 kb on + strand, within PGA1_c03970 at 385.330 kb on + strand, within PGA1_c03970 at 385.338 kb on - strand, within PGA1_c03970 at 385.338 kb on - strand, within PGA1_c03970 at 385.338 kb on - strand, within PGA1_c03970 at 385.355 kb on - strand, within PGA1_c03970 at 385.391 kb on + strand at 385.461 kb on - strand at 385.476 kb on + strand at 385.476 kb on + strand at 385.484 kb on - strand at 385.518 kb on + strand at 385.525 kb on - strand at 385.534 kb on - strand at 385.535 kb on - strand at 385.535 kb on - strand at 385.573 kb on + strand at 385.574 kb on - strand at 385.591 kb on - strand at 385.591 kb on - strand at 385.621 kb on - strand at 385.621 kb on - strand at 385.621 kb on - strand at 385.637 kb on + strand at 385.645 kb on + strand at 385.645 kb on + strand at 385.645 kb on + strand at 385.645 kb on + strand at 385.647 kb on + strand at 385.647 kb on + strand at 385.647 kb on + strand at 385.647 kb on + strand at 385.647 kb on + strand at 385.653 kb on - strand, within PGA1_c03980 at 385.653 kb on - strand, within PGA1_c03980 at 385.655 kb on - strand, within PGA1_c03980 at 385.655 kb on - strand, within PGA1_c03980 at 385.659 kb on + strand, within PGA1_c03980 at 385.667 kb on - strand, within PGA1_c03980 at 385.685 kb on + strand, within PGA1_c03980 at 385.693 kb on - strand, within PGA1_c03980 at 385.726 kb on + strand, within PGA1_c03980 at 385.836 kb on - strand, within PGA1_c03980 at 385.836 kb on - strand, within PGA1_c03980 at 385.838 kb on + strand, within PGA1_c03980 at 385.852 kb on + strand, within PGA1_c03980 at 385.858 kb on + strand, within PGA1_c03980 at 385.872 kb on + strand, within PGA1_c03980 at 385.934 kb on + strand, within PGA1_c03980 at 385.961 kb on - strand, within PGA1_c03980 at 386.021 kb on + strand at 386.024 kb on - strand at 386.071 kb on + strand at 386.073 kb on - strand at 387.259 kb on - strand at 387.259 kb on - strand at 387.259 kb on - strand at 387.259 kb on - strand at 387.341 kb on + strand at 387.349 kb on - strand at 387.349 kb on - strand at 387.349 kb on - strand at 387.349 kb on - strand at 387.381 kb on - strand at 387.514 kb on - strand, within PGA1_c04010 at 387.601 kb on - strand, within PGA1_c04010 at 387.629 kb on + strand, within PGA1_c04010
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 6 mM remove 385,097 - PGA1_c03970 0.61 -0.9 385,133 - PGA1_c03970 0.65 -1.0 385,133 - PGA1_c03970 0.65 -1.3 385,278 - PGA1_c03970 0.80 -0.9 385,293 - PGA1_c03970 0.81 -3.0 385,325 + PGA1_c03970 0.84 -3.3 385,330 + PGA1_c03970 0.85 -2.3 385,330 + PGA1_c03970 0.85 -1.6 385,330 + PGA1_c03970 0.85 -0.1 385,330 + PGA1_c03970 0.85 +0.2 385,338 - PGA1_c03970 0.86 -1.6 385,338 - PGA1_c03970 0.86 -1.5 385,338 - PGA1_c03970 0.86 -0.4 385,355 - PGA1_c03970 0.87 +0.5 385,391 + -3.3 385,461 - -2.2 385,476 + +0.8 385,476 + +0.5 385,484 - +0.3 385,518 + -2.9 385,525 - -0.7 385,534 - +0.6 385,535 - +0.3 385,535 - +0.2 385,573 + -0.9 385,574 - +0.2 385,591 - -1.9 385,591 - -2.5 385,621 - -1.3 385,621 - -0.9 385,621 - +0.8 385,637 + +0.6 385,645 + -1.5 385,645 + -0.1 385,645 + +0.6 385,645 + -0.3 385,647 + -0.0 385,647 + +1.3 385,647 + -0.5 385,647 + +3.4 385,647 + -3.4 385,653 - PGA1_c03980 0.10 -1.7 385,653 - PGA1_c03980 0.10 -0.3 385,655 - PGA1_c03980 0.11 +0.8 385,655 - PGA1_c03980 0.11 -0.2 385,659 + PGA1_c03980 0.12 -0.9 385,667 - PGA1_c03980 0.13 -0.2 385,685 + PGA1_c03980 0.18 +0.1 385,693 - PGA1_c03980 0.20 +0.3 385,726 + PGA1_c03980 0.28 -1.1 385,836 - PGA1_c03980 0.54 -0.2 385,836 - PGA1_c03980 0.54 -1.6 385,838 + PGA1_c03980 0.54 +0.8 385,852 + PGA1_c03980 0.58 -3.1 385,858 + PGA1_c03980 0.59 -0.2 385,872 + PGA1_c03980 0.63 -2.2 385,934 + PGA1_c03980 0.77 +0.5 385,961 - PGA1_c03980 0.84 +0.6 386,021 + -0.5 386,024 - -0.0 386,071 + -0.3 386,073 - -0.5 387,259 - +0.2 387,259 - -0.9 387,259 - -0.8 387,259 - +0.3 387,341 + -1.7 387,349 - +0.4 387,349 - -2.5 387,349 - -1.2 387,349 - +1.6 387,381 - -0.4 387,514 - PGA1_c04010 0.24 +3.4 387,601 - PGA1_c04010 0.43 +0.6 387,629 + PGA1_c04010 0.49 -0.6
Or see this region's nucleotide sequence