Experiment: m.b. nitrite 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03940 and PGA1_c03950 are separated by 128 nucleotides PGA1_c03950 and PGA1_c03960 are separated by 0 nucleotides
PGA1_c03940: PGA1_c03940 - putative permease protein, at 380,698 to 381,534
_c03940
PGA1_c03950: PGA1_c03950 - putative permease protein, at 381,663 to 382,757
_c03950
PGA1_c03960: PGA1_c03960 - ribose import ATP-binding protein RbsA, at 382,758 to 384,287
_c03960
Position (kb) 381
382
383 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 380.665 kb on + strand at 380.665 kb on + strand at 380.716 kb on + strand at 380.716 kb on + strand at 380.729 kb on + strand at 380.777 kb on + strand at 380.783 kb on + strand, within PGA1_c03940 at 380.803 kb on + strand, within PGA1_c03940 at 380.861 kb on + strand, within PGA1_c03940 at 380.960 kb on + strand, within PGA1_c03940 at 380.960 kb on + strand, within PGA1_c03940 at 380.968 kb on - strand, within PGA1_c03940 at 380.980 kb on + strand, within PGA1_c03940 at 381.110 kb on - strand, within PGA1_c03940 at 381.179 kb on + strand, within PGA1_c03940 at 381.183 kb on - strand, within PGA1_c03940 at 381.188 kb on + strand, within PGA1_c03940 at 381.276 kb on + strand, within PGA1_c03940 at 381.290 kb on + strand, within PGA1_c03940 at 381.290 kb on + strand, within PGA1_c03940 at 381.298 kb on - strand, within PGA1_c03940 at 381.314 kb on - strand, within PGA1_c03940 at 381.326 kb on + strand, within PGA1_c03940 at 381.339 kb on - strand, within PGA1_c03940 at 381.352 kb on + strand, within PGA1_c03940 at 381.391 kb on - strand, within PGA1_c03940 at 381.514 kb on + strand at 381.560 kb on + strand at 381.577 kb on + strand at 381.585 kb on - strand at 381.639 kb on - strand at 381.651 kb on - strand at 381.681 kb on - strand at 381.683 kb on + strand at 381.691 kb on - strand at 381.717 kb on - strand at 381.717 kb on - strand at 381.741 kb on - strand at 381.854 kb on + strand, within PGA1_c03950 at 381.881 kb on - strand, within PGA1_c03950 at 381.895 kb on - strand, within PGA1_c03950 at 381.961 kb on - strand, within PGA1_c03950 at 382.012 kb on - strand, within PGA1_c03950 at 382.250 kb on - strand, within PGA1_c03950 at 382.314 kb on - strand, within PGA1_c03950 at 382.345 kb on - strand, within PGA1_c03950 at 382.359 kb on - strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.413 kb on - strand, within PGA1_c03950 at 382.475 kb on + strand, within PGA1_c03950 at 382.483 kb on - strand, within PGA1_c03950 at 382.488 kb on + strand, within PGA1_c03950 at 382.494 kb on + strand, within PGA1_c03950 at 382.494 kb on + strand, within PGA1_c03950 at 382.543 kb on + strand, within PGA1_c03950 at 382.546 kb on - strand, within PGA1_c03950 at 382.576 kb on + strand, within PGA1_c03950 at 382.588 kb on + strand, within PGA1_c03950 at 382.599 kb on + strand, within PGA1_c03950 at 382.606 kb on + strand, within PGA1_c03950 at 382.674 kb on + strand at 382.704 kb on - strand at 382.708 kb on - strand at 382.746 kb on + strand at 382.777 kb on + strand at 382.783 kb on + strand at 382.783 kb on + strand at 382.783 kb on + strand at 382.791 kb on - strand at 383.012 kb on + strand, within PGA1_c03960 at 383.132 kb on + strand, within PGA1_c03960 at 383.140 kb on - strand, within PGA1_c03960 at 383.178 kb on + strand, within PGA1_c03960 at 383.178 kb on + strand, within PGA1_c03960 at 383.180 kb on + strand, within PGA1_c03960 at 383.188 kb on - strand, within PGA1_c03960 at 383.235 kb on + strand, within PGA1_c03960 at 383.243 kb on - strand, within PGA1_c03960 at 383.243 kb on - strand, within PGA1_c03960 at 383.352 kb on + strand, within PGA1_c03960 at 383.355 kb on - strand, within PGA1_c03960 at 383.367 kb on - strand, within PGA1_c03960 at 383.367 kb on - strand, within PGA1_c03960 at 383.406 kb on + strand, within PGA1_c03960 at 383.414 kb on - strand, within PGA1_c03960 at 383.476 kb on + strand, within PGA1_c03960 at 383.476 kb on + strand, within PGA1_c03960 at 383.484 kb on - strand, within PGA1_c03960 at 383.494 kb on + strand, within PGA1_c03960 at 383.502 kb on - strand, within PGA1_c03960 at 383.556 kb on + strand, within PGA1_c03960 at 383.564 kb on + strand, within PGA1_c03960 at 383.572 kb on - strand, within PGA1_c03960 at 383.631 kb on + strand, within PGA1_c03960 at 383.639 kb on - strand, within PGA1_c03960 at 383.687 kb on + strand, within PGA1_c03960 at 383.695 kb on - strand, within PGA1_c03960 at 383.695 kb on - strand, within PGA1_c03960 at 383.695 kb on - strand, within PGA1_c03960 at 383.697 kb on + strand, within PGA1_c03960 at 383.730 kb on - strand, within PGA1_c03960 at 383.733 kb on + strand, within PGA1_c03960 at 383.748 kb on - strand, within PGA1_c03960 at 383.756 kb on - strand, within PGA1_c03960
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 6 mM remove 380,665 + -0.7 380,665 + +1.5 380,716 + -0.3 380,716 + -2.6 380,729 + -0.1 380,777 + -3.3 380,783 + PGA1_c03940 0.10 -1.9 380,803 + PGA1_c03940 0.13 +0.3 380,861 + PGA1_c03940 0.19 -1.0 380,960 + PGA1_c03940 0.31 -0.1 380,960 + PGA1_c03940 0.31 -0.3 380,968 - PGA1_c03940 0.32 -1.1 380,980 + PGA1_c03940 0.34 -2.0 381,110 - PGA1_c03940 0.49 +1.1 381,179 + PGA1_c03940 0.57 -1.1 381,183 - PGA1_c03940 0.58 -0.2 381,188 + PGA1_c03940 0.59 -1.1 381,276 + PGA1_c03940 0.69 -2.2 381,290 + PGA1_c03940 0.71 -0.4 381,290 + PGA1_c03940 0.71 -0.5 381,298 - PGA1_c03940 0.72 -1.0 381,314 - PGA1_c03940 0.74 -1.1 381,326 + PGA1_c03940 0.75 -0.8 381,339 - PGA1_c03940 0.77 -0.5 381,352 + PGA1_c03940 0.78 -2.5 381,391 - PGA1_c03940 0.83 +1.3 381,514 + -0.2 381,560 + +1.0 381,577 + +0.5 381,585 - -0.2 381,639 - -1.1 381,651 - -0.6 381,681 - -0.4 381,683 + -2.5 381,691 - -0.2 381,717 - -1.7 381,717 - -0.7 381,741 - -0.1 381,854 + PGA1_c03950 0.17 -0.7 381,881 - PGA1_c03950 0.20 +0.1 381,895 - PGA1_c03950 0.21 -1.0 381,961 - PGA1_c03950 0.27 -0.9 382,012 - PGA1_c03950 0.32 -0.0 382,250 - PGA1_c03950 0.54 -2.6 382,314 - PGA1_c03950 0.59 -0.8 382,345 - PGA1_c03950 0.62 -0.2 382,359 - PGA1_c03950 0.64 -0.8 382,390 + PGA1_c03950 0.66 -0.1 382,390 + PGA1_c03950 0.66 +2.5 382,390 + PGA1_c03950 0.66 -0.5 382,390 + PGA1_c03950 0.66 -0.0 382,390 + PGA1_c03950 0.66 -2.5 382,390 + PGA1_c03950 0.66 +2.9 382,390 + PGA1_c03950 0.66 -0.1 382,390 + PGA1_c03950 0.66 -1.6 382,390 + PGA1_c03950 0.66 -1.3 382,413 - PGA1_c03950 0.68 -0.3 382,475 + PGA1_c03950 0.74 +0.4 382,483 - PGA1_c03950 0.75 +0.3 382,488 + PGA1_c03950 0.75 +0.6 382,494 + PGA1_c03950 0.76 -2.4 382,494 + PGA1_c03950 0.76 +0.1 382,543 + PGA1_c03950 0.80 -1.9 382,546 - PGA1_c03950 0.81 -1.5 382,576 + PGA1_c03950 0.83 -2.3 382,588 + PGA1_c03950 0.84 -0.3 382,599 + PGA1_c03950 0.85 -0.1 382,606 + PGA1_c03950 0.86 -0.7 382,674 + -0.4 382,704 - -0.8 382,708 - -0.3 382,746 + +1.4 382,777 + -1.0 382,783 + -2.8 382,783 + -0.8 382,783 + -0.3 382,791 - +1.0 383,012 + PGA1_c03960 0.17 -1.1 383,132 + PGA1_c03960 0.24 -1.1 383,140 - PGA1_c03960 0.25 -1.4 383,178 + PGA1_c03960 0.27 -3.7 383,178 + PGA1_c03960 0.27 -2.4 383,180 + PGA1_c03960 0.28 +1.3 383,188 - PGA1_c03960 0.28 -0.2 383,235 + PGA1_c03960 0.31 +0.5 383,243 - PGA1_c03960 0.32 +0.1 383,243 - PGA1_c03960 0.32 -1.7 383,352 + PGA1_c03960 0.39 -1.2 383,355 - PGA1_c03960 0.39 -2.5 383,367 - PGA1_c03960 0.40 +0.8 383,367 - PGA1_c03960 0.40 +0.4 383,406 + PGA1_c03960 0.42 +0.8 383,414 - PGA1_c03960 0.43 -0.9 383,476 + PGA1_c03960 0.47 -0.1 383,476 + PGA1_c03960 0.47 +1.1 383,484 - PGA1_c03960 0.47 -0.2 383,494 + PGA1_c03960 0.48 -0.1 383,502 - PGA1_c03960 0.49 -0.9 383,556 + PGA1_c03960 0.52 +0.2 383,564 + PGA1_c03960 0.53 -1.5 383,572 - PGA1_c03960 0.53 -1.1 383,631 + PGA1_c03960 0.57 +0.7 383,639 - PGA1_c03960 0.58 -3.4 383,687 + PGA1_c03960 0.61 -2.6 383,695 - PGA1_c03960 0.61 -0.2 383,695 - PGA1_c03960 0.61 -3.6 383,695 - PGA1_c03960 0.61 -2.8 383,697 + PGA1_c03960 0.61 +0.2 383,730 - PGA1_c03960 0.64 -1.1 383,733 + PGA1_c03960 0.64 -0.7 383,748 - PGA1_c03960 0.65 -1.7 383,756 - PGA1_c03960 0.65 -0.9
Or see this region's nucleotide sequence