Experiment: m.b. nitrite 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01570 and PGA1_262p01580 are separated by 180 nucleotides PGA1_262p01580 and PGA1_262p01590 are separated by 28 nucleotides PGA1_262p01590 and PGA1_262p01600 are separated by 6 nucleotides
PGA1_262p01570: PGA1_262p01570 - Domain of unknown function., at 173,441 to 175,663
_262p01570
PGA1_262p01580: PGA1_262p01580 - putative metal ion uptake regulator, at 175,844 to 176,230
_262p01580
PGA1_262p01590: PGA1_262p01590 - Protein of unknown function (DUF2796)., at 176,259 to 176,930
_262p01590
PGA1_262p01600: PGA1_262p01600 - putative ABC transporter, ATP binding protein, at 176,937 to 177,632
_262p01600
Position (kb) 175
176
177 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 174.876 kb on - strand, within PGA1_262p01570 at 174.952 kb on + strand, within PGA1_262p01570 at 174.954 kb on + strand, within PGA1_262p01570 at 174.960 kb on - strand, within PGA1_262p01570 at 175.011 kb on + strand, within PGA1_262p01570 at 175.013 kb on + strand, within PGA1_262p01570 at 175.029 kb on - strand, within PGA1_262p01570 at 175.100 kb on - strand, within PGA1_262p01570 at 175.232 kb on - strand, within PGA1_262p01570 at 175.249 kb on - strand, within PGA1_262p01570 at 175.255 kb on + strand, within PGA1_262p01570 at 175.295 kb on + strand, within PGA1_262p01570 at 175.295 kb on + strand, within PGA1_262p01570 at 175.301 kb on + strand, within PGA1_262p01570 at 175.306 kb on + strand, within PGA1_262p01570 at 175.560 kb on + strand at 175.583 kb on - strand at 175.732 kb on + strand at 175.828 kb on + strand at 175.857 kb on + strand at 175.885 kb on - strand, within PGA1_262p01580 at 176.150 kb on + strand, within PGA1_262p01580 at 176.308 kb on - strand at 176.309 kb on + strand at 176.425 kb on + strand, within PGA1_262p01590 at 176.425 kb on + strand, within PGA1_262p01590 at 176.494 kb on - strand, within PGA1_262p01590 at 176.514 kb on + strand, within PGA1_262p01590 at 176.539 kb on - strand, within PGA1_262p01590 at 176.544 kb on - strand, within PGA1_262p01590 at 176.640 kb on - strand, within PGA1_262p01590 at 176.777 kb on - strand, within PGA1_262p01590 at 176.851 kb on + strand, within PGA1_262p01590 at 176.937 kb on - strand at 176.939 kb on - strand at 177.189 kb on + strand, within PGA1_262p01600
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 6 mM remove 174,876 - PGA1_262p01570 0.65 +0.6 174,952 + PGA1_262p01570 0.68 -0.1 174,954 + PGA1_262p01570 0.68 -0.6 174,960 - PGA1_262p01570 0.68 -0.5 175,011 + PGA1_262p01570 0.71 -1.2 175,013 + PGA1_262p01570 0.71 +2.5 175,029 - PGA1_262p01570 0.71 -0.1 175,100 - PGA1_262p01570 0.75 -3.0 175,232 - PGA1_262p01570 0.81 -2.6 175,249 - PGA1_262p01570 0.81 -0.1 175,255 + PGA1_262p01570 0.82 +0.1 175,295 + PGA1_262p01570 0.83 +0.4 175,295 + PGA1_262p01570 0.83 +3.2 175,301 + PGA1_262p01570 0.84 +0.1 175,306 + PGA1_262p01570 0.84 +0.9 175,560 + -1.1 175,583 - +0.2 175,732 + +0.5 175,828 + +0.1 175,857 + +0.6 175,885 - PGA1_262p01580 0.11 -1.2 176,150 + PGA1_262p01580 0.79 -1.4 176,308 - -0.3 176,309 + +0.4 176,425 + PGA1_262p01590 0.25 +0.7 176,425 + PGA1_262p01590 0.25 -0.0 176,494 - PGA1_262p01590 0.35 -0.1 176,514 + PGA1_262p01590 0.38 +0.8 176,539 - PGA1_262p01590 0.42 +0.7 176,544 - PGA1_262p01590 0.42 +0.1 176,640 - PGA1_262p01590 0.57 -0.9 176,777 - PGA1_262p01590 0.77 -0.1 176,851 + PGA1_262p01590 0.88 +0.1 176,937 - +1.6 176,939 - -1.7 177,189 + PGA1_262p01600 0.36 -2.1
Or see this region's nucleotide sequence