Experiment: m.b. nitrite 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03780 and PGA1_c03790 are separated by 212 nucleotides PGA1_c03790 and PGA1_c03800 are separated by 507 nucleotides
PGA1_c03780: PGA1_c03780 - succinate dehydrogenase iron-sulfur subunit, at 363,120 to 363,899
_c03780
PGA1_c03790: PGA1_c03790 - hypothetical protein, at 364,112 to 364,303
_c03790
PGA1_c03800: PGA1_c03800 - putative lysine/ornithine decarboxylase, at 364,811 to 365,992
_c03800
Position (kb) 364
365 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 363.906 kb on - strand at 363.928 kb on - strand at 363.933 kb on + strand at 363.933 kb on + strand at 363.970 kb on + strand at 364.001 kb on + strand at 364.006 kb on + strand at 364.083 kb on - strand at 364.109 kb on + strand at 364.175 kb on - strand, within PGA1_c03790 at 364.176 kb on - strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.219 kb on + strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.292 kb on + strand at 364.350 kb on - strand at 364.441 kb on - strand at 364.441 kb on - strand at 364.483 kb on - strand at 364.488 kb on + strand at 364.488 kb on - strand at 364.488 kb on - strand at 364.528 kb on - strand at 364.598 kb on + strand at 364.601 kb on - strand at 364.606 kb on - strand at 364.677 kb on + strand at 364.724 kb on + strand at 364.731 kb on + strand at 364.733 kb on - strand at 364.882 kb on + strand at 364.882 kb on + strand at 364.882 kb on + strand at 364.882 kb on + strand at 364.890 kb on - strand at 364.890 kb on - strand at 364.890 kb on - strand at 364.901 kb on + strand at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.970 kb on + strand, within PGA1_c03800 at 364.978 kb on - strand, within PGA1_c03800 at 364.978 kb on - strand, within PGA1_c03800 at 364.978 kb on - strand, within PGA1_c03800 at 364.978 kb on - strand, within PGA1_c03800 at 364.978 kb on - strand, within PGA1_c03800 at 365.008 kb on - strand, within PGA1_c03800 at 365.041 kb on - strand, within PGA1_c03800 at 365.129 kb on + strand, within PGA1_c03800 at 365.215 kb on + strand, within PGA1_c03800 at 365.248 kb on + strand, within PGA1_c03800
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 6 mM remove 363,906 - -3.5 363,928 - -0.6 363,933 + +1.2 363,933 + -0.4 363,970 + +0.3 364,001 + +1.2 364,006 + +1.0 364,083 - -0.2 364,109 + -1.3 364,175 - PGA1_c03790 0.33 +1.4 364,176 - PGA1_c03790 0.33 -1.5 364,213 + PGA1_c03790 0.53 +0.0 364,213 + PGA1_c03790 0.53 -1.1 364,213 + PGA1_c03790 0.53 +0.3 364,213 + PGA1_c03790 0.53 +1.0 364,213 + PGA1_c03790 0.53 -0.1 364,213 + PGA1_c03790 0.53 -0.0 364,213 + PGA1_c03790 0.53 -1.3 364,213 + PGA1_c03790 0.53 +0.8 364,219 + PGA1_c03790 0.56 -0.5 364,221 - PGA1_c03790 0.57 +0.5 364,221 - PGA1_c03790 0.57 -0.1 364,221 - PGA1_c03790 0.57 +0.5 364,221 - PGA1_c03790 0.57 -0.3 364,221 - PGA1_c03790 0.57 +0.1 364,221 - PGA1_c03790 0.57 +0.9 364,221 - PGA1_c03790 0.57 -1.2 364,221 - PGA1_c03790 0.57 -0.3 364,292 + +0.5 364,350 - -0.5 364,441 - -1.5 364,441 - -1.7 364,483 - +0.1 364,488 + -1.0 364,488 - +0.1 364,488 - -1.2 364,528 - +0.0 364,598 + +2.3 364,601 - +0.8 364,606 - +0.2 364,677 + -0.8 364,724 + -0.0 364,731 + +0.3 364,733 - -1.7 364,882 + +0.3 364,882 + -1.2 364,882 + -2.4 364,882 + +0.1 364,890 - -2.4 364,890 - +0.9 364,890 - +0.3 364,901 + -2.2 364,970 + PGA1_c03800 0.13 -1.0 364,970 + PGA1_c03800 0.13 -2.8 364,970 + PGA1_c03800 0.13 -0.4 364,970 + PGA1_c03800 0.13 -0.3 364,970 + PGA1_c03800 0.13 -0.2 364,970 + PGA1_c03800 0.13 -0.9 364,970 + PGA1_c03800 0.13 -1.3 364,970 + PGA1_c03800 0.13 -0.6 364,970 + PGA1_c03800 0.13 +1.4 364,970 + PGA1_c03800 0.13 -0.1 364,970 + PGA1_c03800 0.13 +0.6 364,970 + PGA1_c03800 0.13 -1.1 364,970 + PGA1_c03800 0.13 -2.1 364,970 + PGA1_c03800 0.13 -0.3 364,978 - PGA1_c03800 0.14 -0.7 364,978 - PGA1_c03800 0.14 -1.9 364,978 - PGA1_c03800 0.14 -0.1 364,978 - PGA1_c03800 0.14 +2.0 364,978 - PGA1_c03800 0.14 +0.1 365,008 - PGA1_c03800 0.17 -1.2 365,041 - PGA1_c03800 0.19 +1.2 365,129 + PGA1_c03800 0.27 +1.5 365,215 + PGA1_c03800 0.34 -3.2 365,248 + PGA1_c03800 0.37 -0.1
Or see this region's nucleotide sequence