Experiment: m.b. nitrite 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03720 and PGA1_c03730 are separated by 32 nucleotides PGA1_c03730 and PGA1_c03740 are separated by 192 nucleotides PGA1_c03740 and PGA1_c03750 are separated by 18 nucleotides PGA1_c03750 and PGA1_c03760 are separated by 15 nucleotides
PGA1_c03720: PGA1_c03720 - phosphoglycerate mutase-like protein, at 357,832 to 358,461
_c03720
PGA1_c03730: PGA1_c03730 - Protein of unknown function (DUF1194)., at 358,494 to 359,183
_c03730
PGA1_c03740: PGA1_c03740 - succinate dehydrogenase cytochrome b556 subunit, at 359,376 to 359,759
_c03740
PGA1_c03750: PGA1_c03750 - succinate dehydrogenase hydrophobic membrane anchor subunit, at 359,778 to 360,149
_c03750
PGA1_c03760: PGA1_c03760 - succinate dehydrogenase flavoprotein subunit, at 360,165 to 361,970
_c03760
Position (kb) 359
360 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 358.377 kb on - strand, within PGA1_c03720 at 358.387 kb on - strand, within PGA1_c03720 at 358.388 kb on + strand, within PGA1_c03720 at 358.388 kb on + strand, within PGA1_c03720 at 358.396 kb on + strand, within PGA1_c03720 at 358.398 kb on + strand, within PGA1_c03720 at 358.406 kb on - strand at 358.406 kb on - strand at 358.440 kb on - strand at 358.456 kb on + strand at 358.456 kb on + strand at 358.456 kb on + strand at 358.461 kb on + strand at 358.464 kb on - strand at 358.464 kb on - strand at 358.530 kb on + strand at 358.546 kb on - strand at 358.555 kb on + strand at 358.555 kb on + strand at 358.555 kb on + strand at 358.555 kb on + strand at 358.563 kb on - strand, within PGA1_c03730 at 358.568 kb on - strand, within PGA1_c03730 at 358.586 kb on + strand, within PGA1_c03730 at 358.589 kb on - strand, within PGA1_c03730 at 358.613 kb on + strand, within PGA1_c03730 at 358.623 kb on - strand, within PGA1_c03730 at 358.625 kb on + strand, within PGA1_c03730 at 358.625 kb on + strand, within PGA1_c03730 at 358.632 kb on + strand, within PGA1_c03730 at 358.633 kb on - strand, within PGA1_c03730 at 358.633 kb on - strand, within PGA1_c03730 at 358.633 kb on - strand, within PGA1_c03730 at 358.652 kb on + strand, within PGA1_c03730 at 358.665 kb on + strand, within PGA1_c03730 at 358.671 kb on + strand, within PGA1_c03730 at 358.671 kb on + strand, within PGA1_c03730 at 358.679 kb on - strand, within PGA1_c03730 at 358.679 kb on - strand, within PGA1_c03730 at 358.679 kb on - strand, within PGA1_c03730 at 358.763 kb on + strand, within PGA1_c03730 at 358.770 kb on + strand, within PGA1_c03730 at 358.778 kb on - strand, within PGA1_c03730 at 358.825 kb on - strand, within PGA1_c03730 at 358.834 kb on + strand, within PGA1_c03730 at 358.840 kb on - strand, within PGA1_c03730 at 358.842 kb on - strand, within PGA1_c03730 at 358.853 kb on + strand, within PGA1_c03730 at 358.866 kb on - strand, within PGA1_c03730 at 358.876 kb on - strand, within PGA1_c03730 at 358.881 kb on + strand, within PGA1_c03730 at 358.897 kb on - strand, within PGA1_c03730 at 358.943 kb on - strand, within PGA1_c03730 at 358.944 kb on - strand, within PGA1_c03730 at 358.944 kb on - strand, within PGA1_c03730 at 358.999 kb on + strand, within PGA1_c03730 at 358.999 kb on + strand, within PGA1_c03730 at 358.999 kb on + strand, within PGA1_c03730 at 359.017 kb on - strand, within PGA1_c03730 at 359.053 kb on - strand, within PGA1_c03730 at 359.065 kb on + strand, within PGA1_c03730 at 359.065 kb on + strand, within PGA1_c03730 at 359.070 kb on - strand, within PGA1_c03730 at 359.073 kb on - strand, within PGA1_c03730 at 359.086 kb on + strand, within PGA1_c03730 at 359.094 kb on - strand, within PGA1_c03730 at 359.094 kb on - strand, within PGA1_c03730 at 359.106 kb on - strand, within PGA1_c03730 at 359.139 kb on - strand at 359.159 kb on - strand at 359.161 kb on + strand at 359.161 kb on + strand at 359.161 kb on + strand at 359.169 kb on - strand at 359.169 kb on - strand at 359.169 kb on - strand at 359.203 kb on - strand at 359.758 kb on + strand at 360.126 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 6 mM remove 358,377 - PGA1_c03720 0.87 +1.3 358,387 - PGA1_c03720 0.88 +1.4 358,388 + PGA1_c03720 0.88 +1.7 358,388 + PGA1_c03720 0.88 +1.3 358,396 + PGA1_c03720 0.90 +1.0 358,398 + PGA1_c03720 0.90 -1.2 358,406 - -0.8 358,406 - +2.0 358,440 - -1.0 358,456 + -0.1 358,456 + +0.3 358,456 + +1.2 358,461 + -1.2 358,464 - -1.5 358,464 - -3.0 358,530 + -1.2 358,546 - +0.3 358,555 + -1.0 358,555 + +0.6 358,555 + -2.4 358,555 + -2.6 358,563 - PGA1_c03730 0.10 +0.1 358,568 - PGA1_c03730 0.11 +0.1 358,586 + PGA1_c03730 0.13 +0.3 358,589 - PGA1_c03730 0.14 +0.1 358,613 + PGA1_c03730 0.17 +0.6 358,623 - PGA1_c03730 0.19 -2.0 358,625 + PGA1_c03730 0.19 -0.5 358,625 + PGA1_c03730 0.19 -0.1 358,632 + PGA1_c03730 0.20 -2.5 358,633 - PGA1_c03730 0.20 +1.0 358,633 - PGA1_c03730 0.20 -2.0 358,633 - PGA1_c03730 0.20 -0.6 358,652 + PGA1_c03730 0.23 -0.9 358,665 + PGA1_c03730 0.25 +1.3 358,671 + PGA1_c03730 0.26 -0.7 358,671 + PGA1_c03730 0.26 -0.5 358,679 - PGA1_c03730 0.27 +0.4 358,679 - PGA1_c03730 0.27 -1.2 358,679 - PGA1_c03730 0.27 +0.3 358,763 + PGA1_c03730 0.39 +1.1 358,770 + PGA1_c03730 0.40 +0.9 358,778 - PGA1_c03730 0.41 +1.4 358,825 - PGA1_c03730 0.48 -1.6 358,834 + PGA1_c03730 0.49 +1.3 358,840 - PGA1_c03730 0.50 -1.0 358,842 - PGA1_c03730 0.50 -0.5 358,853 + PGA1_c03730 0.52 -2.8 358,866 - PGA1_c03730 0.54 +1.4 358,876 - PGA1_c03730 0.55 -1.8 358,881 + PGA1_c03730 0.56 +1.2 358,897 - PGA1_c03730 0.58 -0.9 358,943 - PGA1_c03730 0.65 -2.4 358,944 - PGA1_c03730 0.65 +0.1 358,944 - PGA1_c03730 0.65 -1.4 358,999 + PGA1_c03730 0.73 +0.3 358,999 + PGA1_c03730 0.73 -2.8 358,999 + PGA1_c03730 0.73 -0.7 359,017 - PGA1_c03730 0.76 +0.1 359,053 - PGA1_c03730 0.81 -0.2 359,065 + PGA1_c03730 0.83 +1.2 359,065 + PGA1_c03730 0.83 +1.0 359,070 - PGA1_c03730 0.83 +0.9 359,073 - PGA1_c03730 0.84 -2.2 359,086 + PGA1_c03730 0.86 +0.1 359,094 - PGA1_c03730 0.87 +0.9 359,094 - PGA1_c03730 0.87 -0.0 359,106 - PGA1_c03730 0.89 -0.8 359,139 - -2.5 359,159 - +1.0 359,161 + +1.4 359,161 + -0.3 359,161 + -1.2 359,169 - -2.0 359,169 - +0.2 359,169 - -0.3 359,203 - +1.5 359,758 + -0.1 360,126 + +1.4
Or see this region's nucleotide sequence