Experiment: m.b. nitrite 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03680 and PGA1_c03690 are separated by 35 nucleotides PGA1_c03690 and PGA1_c03700 are separated by 6 nucleotides PGA1_c03700 and PGA1_c03710 overlap by 1 nucleotides
PGA1_c03680: PGA1_c03680 - (3S)-malyl-CoA thioesterase [EC:3.1.2.30] <small>(from data)</small>, at 355,129 to 355,983
_c03680
PGA1_c03690: PGA1_c03690 - putative NnrU protein, at 356,019 to 356,567
_c03690
PGA1_c03700: PGA1_c03700 - Uncharacterized conserved small protein, at 356,574 to 356,777
_c03700
PGA1_c03710: PGA1_c03710 - Acyl dehydratase, at 356,777 to 357,808
_c03710
Position (kb) 356
357 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 355.135 kb on - strand at 355.159 kb on + strand at 355.276 kb on + strand, within PGA1_c03680 at 355.291 kb on - strand, within PGA1_c03680 at 355.312 kb on - strand, within PGA1_c03680 at 355.323 kb on + strand, within PGA1_c03680 at 355.357 kb on + strand, within PGA1_c03680 at 355.416 kb on + strand, within PGA1_c03680 at 355.416 kb on + strand, within PGA1_c03680 at 355.471 kb on - strand, within PGA1_c03680 at 355.488 kb on + strand, within PGA1_c03680 at 355.488 kb on + strand, within PGA1_c03680 at 355.496 kb on - strand, within PGA1_c03680 at 355.496 kb on - strand, within PGA1_c03680 at 355.517 kb on - strand, within PGA1_c03680 at 355.610 kb on + strand, within PGA1_c03680 at 355.641 kb on - strand, within PGA1_c03680 at 355.684 kb on - strand, within PGA1_c03680 at 355.693 kb on + strand, within PGA1_c03680 at 355.694 kb on - strand, within PGA1_c03680 at 355.705 kb on + strand, within PGA1_c03680 at 355.712 kb on + strand, within PGA1_c03680 at 355.721 kb on - strand, within PGA1_c03680 at 355.721 kb on - strand, within PGA1_c03680 at 355.748 kb on - strand, within PGA1_c03680 at 355.777 kb on + strand, within PGA1_c03680 at 355.785 kb on - strand, within PGA1_c03680 at 355.870 kb on + strand, within PGA1_c03680 at 355.877 kb on - strand, within PGA1_c03680 at 355.881 kb on + strand, within PGA1_c03680 at 355.881 kb on + strand, within PGA1_c03680 at 355.881 kb on + strand, within PGA1_c03680 at 355.881 kb on + strand, within PGA1_c03680 at 355.881 kb on + strand, within PGA1_c03680 at 355.881 kb on + strand, within PGA1_c03680 at 355.881 kb on + strand, within PGA1_c03680 at 355.883 kb on + strand, within PGA1_c03680 at 355.883 kb on - strand, within PGA1_c03680 at 355.889 kb on - strand, within PGA1_c03680 at 355.889 kb on - strand, within PGA1_c03680 at 355.889 kb on - strand, within PGA1_c03680 at 355.980 kb on - strand at 355.980 kb on - strand at 356.002 kb on + strand at 356.002 kb on - strand at 356.031 kb on + strand at 356.097 kb on + strand, within PGA1_c03690 at 356.097 kb on + strand, within PGA1_c03690 at 356.105 kb on - strand, within PGA1_c03690 at 356.105 kb on - strand, within PGA1_c03690 at 356.105 kb on - strand, within PGA1_c03690 at 356.105 kb on - strand, within PGA1_c03690 at 356.130 kb on + strand, within PGA1_c03690 at 356.159 kb on - strand, within PGA1_c03690 at 356.159 kb on - strand, within PGA1_c03690 at 356.175 kb on + strand, within PGA1_c03690 at 356.185 kb on + strand, within PGA1_c03690 at 356.186 kb on - strand, within PGA1_c03690 at 356.186 kb on - strand, within PGA1_c03690 at 356.233 kb on + strand, within PGA1_c03690 at 356.263 kb on + strand, within PGA1_c03690 at 356.263 kb on + strand, within PGA1_c03690 at 356.268 kb on + strand, within PGA1_c03690 at 356.271 kb on - strand, within PGA1_c03690 at 356.271 kb on - strand, within PGA1_c03690 at 356.271 kb on - strand, within PGA1_c03690 at 356.276 kb on - strand, within PGA1_c03690 at 356.276 kb on - strand, within PGA1_c03690 at 356.379 kb on - strand, within PGA1_c03690 at 356.389 kb on - strand, within PGA1_c03690 at 356.436 kb on - strand, within PGA1_c03690 at 356.441 kb on + strand, within PGA1_c03690 at 356.444 kb on - strand, within PGA1_c03690 at 356.449 kb on - strand, within PGA1_c03690 at 356.519 kb on + strand at 356.538 kb on - strand at 356.620 kb on + strand, within PGA1_c03700 at 356.628 kb on - strand, within PGA1_c03700 at 356.628 kb on - strand, within PGA1_c03700 at 356.642 kb on + strand, within PGA1_c03700 at 356.642 kb on + strand, within PGA1_c03700 at 356.650 kb on - strand, within PGA1_c03700 at 356.658 kb on + strand, within PGA1_c03700 at 356.736 kb on + strand, within PGA1_c03700 at 356.751 kb on + strand, within PGA1_c03700 at 356.759 kb on - strand at 356.780 kb on + strand at 356.780 kb on + strand at 356.787 kb on - strand at 356.788 kb on - strand at 356.789 kb on + strand at 356.792 kb on - strand at 356.797 kb on - strand at 356.797 kb on - strand at 356.869 kb on - strand at 356.937 kb on + strand, within PGA1_c03710 at 356.937 kb on + strand, within PGA1_c03710 at 356.945 kb on - strand, within PGA1_c03710 at 357.002 kb on + strand, within PGA1_c03710 at 357.072 kb on + strand, within PGA1_c03710 at 357.077 kb on + strand, within PGA1_c03710 at 357.078 kb on + strand, within PGA1_c03710 at 357.078 kb on + strand, within PGA1_c03710 at 357.078 kb on + strand, within PGA1_c03710 at 357.086 kb on - strand, within PGA1_c03710 at 357.086 kb on - strand, within PGA1_c03710 at 357.086 kb on - strand, within PGA1_c03710 at 357.086 kb on - strand, within PGA1_c03710 at 357.086 kb on - strand, within PGA1_c03710 at 357.146 kb on + strand, within PGA1_c03710 at 357.165 kb on + strand, within PGA1_c03710 at 357.167 kb on - strand, within PGA1_c03710 at 357.167 kb on - strand, within PGA1_c03710 at 357.167 kb on - strand, within PGA1_c03710 at 357.172 kb on - strand, within PGA1_c03710 at 357.172 kb on - strand, within PGA1_c03710 at 357.173 kb on - strand, within PGA1_c03710 at 357.173 kb on - strand, within PGA1_c03710 at 357.173 kb on - strand, within PGA1_c03710 at 357.173 kb on - strand, within PGA1_c03710 at 357.173 kb on - strand, within PGA1_c03710 at 357.173 kb on - strand, within PGA1_c03710 at 357.173 kb on - strand, within PGA1_c03710 at 357.173 kb on - strand, within PGA1_c03710 at 357.173 kb on - strand, within PGA1_c03710 at 357.173 kb on - strand, within PGA1_c03710 at 357.188 kb on + strand, within PGA1_c03710 at 357.207 kb on + strand, within PGA1_c03710 at 357.207 kb on + strand, within PGA1_c03710 at 357.207 kb on + strand, within PGA1_c03710 at 357.207 kb on + strand, within PGA1_c03710 at 357.207 kb on + strand, within PGA1_c03710 at 357.207 kb on + strand, within PGA1_c03710 at 357.207 kb on + strand, within PGA1_c03710 at 357.215 kb on - strand, within PGA1_c03710 at 357.215 kb on - strand, within PGA1_c03710 at 357.215 kb on - strand, within PGA1_c03710 at 357.268 kb on + strand, within PGA1_c03710 at 357.268 kb on + strand, within PGA1_c03710 at 357.275 kb on - strand, within PGA1_c03710 at 357.281 kb on - strand, within PGA1_c03710 at 357.308 kb on + strand, within PGA1_c03710 at 357.348 kb on - strand, within PGA1_c03710 at 357.374 kb on - strand, within PGA1_c03710 at 357.394 kb on + strand, within PGA1_c03710 at 357.402 kb on - strand, within PGA1_c03710 at 357.408 kb on + strand, within PGA1_c03710 at 357.412 kb on + strand, within PGA1_c03710 at 357.435 kb on + strand, within PGA1_c03710 at 357.443 kb on - strand, within PGA1_c03710 at 357.495 kb on - strand, within PGA1_c03710 at 357.500 kb on + strand, within PGA1_c03710 at 357.505 kb on + strand, within PGA1_c03710 at 357.505 kb on + strand, within PGA1_c03710 at 357.505 kb on + strand, within PGA1_c03710 at 357.505 kb on + strand, within PGA1_c03710 at 357.505 kb on + strand, within PGA1_c03710 at 357.505 kb on + strand, within PGA1_c03710 at 357.505 kb on + strand, within PGA1_c03710 at 357.505 kb on + strand, within PGA1_c03710 at 357.513 kb on - strand, within PGA1_c03710 at 357.513 kb on - strand, within PGA1_c03710 at 357.521 kb on - strand, within PGA1_c03710 at 357.533 kb on - strand, within PGA1_c03710
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 6 mM remove 355,135 - -0.2 355,159 + +1.0 355,276 + PGA1_c03680 0.17 +1.0 355,291 - PGA1_c03680 0.19 +0.4 355,312 - PGA1_c03680 0.21 +1.3 355,323 + PGA1_c03680 0.23 +1.7 355,357 + PGA1_c03680 0.27 -1.5 355,416 + PGA1_c03680 0.34 +0.2 355,416 + PGA1_c03680 0.34 +0.1 355,471 - PGA1_c03680 0.40 +1.0 355,488 + PGA1_c03680 0.42 +1.4 355,488 + PGA1_c03680 0.42 +0.1 355,496 - PGA1_c03680 0.43 +0.2 355,496 - PGA1_c03680 0.43 +0.4 355,517 - PGA1_c03680 0.45 -1.5 355,610 + PGA1_c03680 0.56 -1.5 355,641 - PGA1_c03680 0.60 +0.5 355,684 - PGA1_c03680 0.65 +1.5 355,693 + PGA1_c03680 0.66 +0.7 355,694 - PGA1_c03680 0.66 +1.3 355,705 + PGA1_c03680 0.67 +0.6 355,712 + PGA1_c03680 0.68 +0.7 355,721 - PGA1_c03680 0.69 +0.4 355,721 - PGA1_c03680 0.69 -0.3 355,748 - PGA1_c03680 0.72 -0.7 355,777 + PGA1_c03680 0.76 -0.3 355,785 - PGA1_c03680 0.77 -0.1 355,870 + PGA1_c03680 0.87 -2.0 355,877 - PGA1_c03680 0.87 -1.7 355,881 + PGA1_c03680 0.88 -2.2 355,881 + PGA1_c03680 0.88 -1.0 355,881 + PGA1_c03680 0.88 -0.4 355,881 + PGA1_c03680 0.88 -1.5 355,881 + PGA1_c03680 0.88 -0.3 355,881 + PGA1_c03680 0.88 -1.3 355,881 + PGA1_c03680 0.88 -0.0 355,883 + PGA1_c03680 0.88 +2.4 355,883 - PGA1_c03680 0.88 -0.7 355,889 - PGA1_c03680 0.89 +0.1 355,889 - PGA1_c03680 0.89 -0.8 355,889 - PGA1_c03680 0.89 -0.9 355,980 - +1.3 355,980 - +0.1 356,002 + -2.3 356,002 - -0.7 356,031 + +1.7 356,097 + PGA1_c03690 0.14 +1.4 356,097 + PGA1_c03690 0.14 -1.7 356,105 - PGA1_c03690 0.16 -0.6 356,105 - PGA1_c03690 0.16 +1.4 356,105 - PGA1_c03690 0.16 +3.6 356,105 - PGA1_c03690 0.16 -3.4 356,130 + PGA1_c03690 0.20 +2.6 356,159 - PGA1_c03690 0.26 -3.2 356,159 - PGA1_c03690 0.26 +0.3 356,175 + PGA1_c03690 0.28 -0.8 356,185 + PGA1_c03690 0.30 -0.0 356,186 - PGA1_c03690 0.30 +1.9 356,186 - PGA1_c03690 0.30 -1.5 356,233 + PGA1_c03690 0.39 +1.2 356,263 + PGA1_c03690 0.44 +2.1 356,263 + PGA1_c03690 0.44 -1.5 356,268 + PGA1_c03690 0.45 +0.4 356,271 - PGA1_c03690 0.46 +0.8 356,271 - PGA1_c03690 0.46 +0.3 356,271 - PGA1_c03690 0.46 +0.5 356,276 - PGA1_c03690 0.47 +1.0 356,276 - PGA1_c03690 0.47 +0.8 356,379 - PGA1_c03690 0.66 -1.0 356,389 - PGA1_c03690 0.67 -0.0 356,436 - PGA1_c03690 0.76 +0.0 356,441 + PGA1_c03690 0.77 -0.7 356,444 - PGA1_c03690 0.77 +1.5 356,449 - PGA1_c03690 0.78 -2.3 356,519 + -0.7 356,538 - +1.3 356,620 + PGA1_c03700 0.23 +1.3 356,628 - PGA1_c03700 0.26 -1.3 356,628 - PGA1_c03700 0.26 -2.0 356,642 + PGA1_c03700 0.33 -2.0 356,642 + PGA1_c03700 0.33 -1.4 356,650 - PGA1_c03700 0.37 +0.7 356,658 + PGA1_c03700 0.41 -0.6 356,736 + PGA1_c03700 0.79 -1.3 356,751 + PGA1_c03700 0.87 +0.7 356,759 - -0.2 356,780 + +0.5 356,780 + -1.8 356,787 - -0.9 356,788 - +0.2 356,789 + +0.9 356,792 - -1.3 356,797 - -1.9 356,797 - -2.0 356,869 - +0.6 356,937 + PGA1_c03710 0.16 -1.7 356,937 + PGA1_c03710 0.16 +0.3 356,945 - PGA1_c03710 0.16 +1.9 357,002 + PGA1_c03710 0.22 -2.5 357,072 + PGA1_c03710 0.29 +0.2 357,077 + PGA1_c03710 0.29 -2.4 357,078 + PGA1_c03710 0.29 +0.3 357,078 + PGA1_c03710 0.29 +1.4 357,078 + PGA1_c03710 0.29 +0.5 357,086 - PGA1_c03710 0.30 +0.1 357,086 - PGA1_c03710 0.30 +1.6 357,086 - PGA1_c03710 0.30 +0.6 357,086 - PGA1_c03710 0.30 -0.2 357,086 - PGA1_c03710 0.30 -1.8 357,146 + PGA1_c03710 0.36 -1.2 357,165 + PGA1_c03710 0.38 +1.8 357,167 - PGA1_c03710 0.38 +0.6 357,167 - PGA1_c03710 0.38 +0.1 357,167 - PGA1_c03710 0.38 +0.1 357,172 - PGA1_c03710 0.38 -0.7 357,172 - PGA1_c03710 0.38 -0.7 357,173 - PGA1_c03710 0.38 +0.9 357,173 - PGA1_c03710 0.38 +0.1 357,173 - PGA1_c03710 0.38 -0.3 357,173 - PGA1_c03710 0.38 +0.0 357,173 - PGA1_c03710 0.38 -0.4 357,173 - PGA1_c03710 0.38 -1.5 357,173 - PGA1_c03710 0.38 -1.3 357,173 - PGA1_c03710 0.38 -1.0 357,173 - PGA1_c03710 0.38 +1.3 357,173 - PGA1_c03710 0.38 -2.3 357,188 + PGA1_c03710 0.40 +1.6 357,207 + PGA1_c03710 0.42 +1.8 357,207 + PGA1_c03710 0.42 -2.1 357,207 + PGA1_c03710 0.42 +2.2 357,207 + PGA1_c03710 0.42 +1.9 357,207 + PGA1_c03710 0.42 +2.9 357,207 + PGA1_c03710 0.42 -1.4 357,207 + PGA1_c03710 0.42 +1.0 357,215 - PGA1_c03710 0.42 +1.4 357,215 - PGA1_c03710 0.42 +1.5 357,215 - PGA1_c03710 0.42 +0.6 357,268 + PGA1_c03710 0.48 +0.2 357,268 + PGA1_c03710 0.48 -2.4 357,275 - PGA1_c03710 0.48 -0.3 357,281 - PGA1_c03710 0.49 -0.3 357,308 + PGA1_c03710 0.51 +0.4 357,348 - PGA1_c03710 0.55 +2.8 357,374 - PGA1_c03710 0.58 -0.8 357,394 + PGA1_c03710 0.60 +1.2 357,402 - PGA1_c03710 0.61 +0.9 357,408 + PGA1_c03710 0.61 -1.2 357,412 + PGA1_c03710 0.62 -2.2 357,435 + PGA1_c03710 0.64 +2.1 357,443 - PGA1_c03710 0.65 +0.1 357,495 - PGA1_c03710 0.70 +0.6 357,500 + PGA1_c03710 0.70 +0.6 357,505 + PGA1_c03710 0.71 +1.9 357,505 + PGA1_c03710 0.71 +0.6 357,505 + PGA1_c03710 0.71 +1.1 357,505 + PGA1_c03710 0.71 -0.1 357,505 + PGA1_c03710 0.71 -2.0 357,505 + PGA1_c03710 0.71 -0.2 357,505 + PGA1_c03710 0.71 -0.7 357,505 + PGA1_c03710 0.71 +1.0 357,513 - PGA1_c03710 0.71 +0.7 357,513 - PGA1_c03710 0.71 +0.3 357,521 - PGA1_c03710 0.72 +0.5 357,533 - PGA1_c03710 0.73 -0.5
Or see this region's nucleotide sequence