Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c32120

Experiment: m.b. nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. nitrite 6 mM
3,366,438	-		PGA1_c32100	0.69	+0.9
3,366,440	+		PGA1_c32100	0.69	-0.7
3,366,491	-		PGA1_c32100	0.72	+0.9
3,366,551	+		PGA1_c32100	0.76	+0.5
3,366,647	+		PGA1_c32100	0.82	+0.3
3,366,652	+		PGA1_c32100	0.82	-1.0
3,366,652	+		PGA1_c32100	0.82	-1.8
3,366,660	-		PGA1_c32100	0.82	+1.5
3,366,683	+		PGA1_c32100	0.84	-1.7
3,366,695	-		PGA1_c32100	0.85	-1.0
3,366,710	+		PGA1_c32100	0.86	+0.1
3,366,740	-		PGA1_c32100	0.87	+1.7
3,366,740	-		PGA1_c32100	0.87	+0.2
3,366,752	+		PGA1_c32100	0.88	+1.5
3,366,767	+		PGA1_c32100	0.89	+0.7
3,366,767	+		PGA1_c32100	0.89	-2.2
3,366,767	+		PGA1_c32100	0.89	-3.1
3,366,774	+		PGA1_c32100	0.89	+0.4
3,366,775	-		PGA1_c32100	0.90	+0.6
3,366,789	+				-3.0
3,366,797	-				+0.7
3,366,823	+				+0.7
3,366,848	+				+0.2
3,366,855	+				-0.3
3,366,892	-				-2.6
3,366,954	+				-0.8
3,366,962	-				-0.7
3,367,012	-		PGA1_c32110	0.15	-0.0
3,367,028	-		PGA1_c32110	0.19	-2.9
3,367,029	-		PGA1_c32110	0.19	+0.2
3,367,056	+		PGA1_c32110	0.25	-1.9
3,367,062	+		PGA1_c32110	0.26	-2.2
3,367,119	+		PGA1_c32110	0.38	-0.1
3,367,132	+		PGA1_c32110	0.41	-1.2
3,367,189	+		PGA1_c32110	0.53	-2.1
3,367,221	+		PGA1_c32110	0.59	-1.8
3,367,375	-				+3.0
3,367,407	+				+0.3
3,367,436	-				+2.1
3,367,585	+		PGA1_c32120	0.12	+2.9
3,367,585	+		PGA1_c32120	0.12	+1.1
3,367,598	-		PGA1_c32120	0.13	-0.2
3,367,603	+		PGA1_c32120	0.14	-0.5
3,367,628	+		PGA1_c32120	0.15	-0.8
3,367,666	+		PGA1_c32120	0.18	+1.4
3,367,676	+		PGA1_c32120	0.19	-0.7
3,367,684	-		PGA1_c32120	0.19	-2.9
3,367,694	-		PGA1_c32120	0.20	+0.8
3,367,722	+		PGA1_c32120	0.22	-0.8
3,367,736	+		PGA1_c32120	0.23	+0.3
3,367,826	+		PGA1_c32120	0.29	-0.3
3,367,859	+		PGA1_c32120	0.31	+0.2
3,367,878	-		PGA1_c32120	0.32	+0.3
3,367,923	-		PGA1_c32120	0.36	-0.2
3,368,000	+		PGA1_c32120	0.41	+0.3
3,368,117	-		PGA1_c32120	0.49	-0.8
3,368,165	+		PGA1_c32120	0.52	-1.0
3,368,165	+		PGA1_c32120	0.52	-0.4
3,368,165	+		PGA1_c32120	0.52	-1.7
3,368,173	-		PGA1_c32120	0.53	-0.3
3,368,173	-		PGA1_c32120	0.53	-1.1
3,368,173	-		PGA1_c32120	0.53	-0.6
3,368,173	-		PGA1_c32120	0.53	+0.7
3,368,173	-		PGA1_c32120	0.53	+1.4
3,368,183	-		PGA1_c32120	0.53	+1.0
3,368,205	-		PGA1_c32120	0.55	-0.0
3,368,263	+		PGA1_c32120	0.59	-1.5
3,368,263	+		PGA1_c32120	0.59	-2.3
3,368,263	+		PGA1_c32120	0.59	-2.2
3,368,263	+		PGA1_c32120	0.59	+0.8
3,368,263	+		PGA1_c32120	0.59	+0.7
3,368,271	-		PGA1_c32120	0.59	-1.9
3,368,271	-		PGA1_c32120	0.59	+1.2
3,368,271	-		PGA1_c32120	0.59	+0.3
3,368,271	-		PGA1_c32120	0.59	-2.5
3,368,271	-		PGA1_c32120	0.59	+2.3
3,368,322	-		PGA1_c32120	0.63	+0.0
3,368,363	+		PGA1_c32120	0.66	-1.2
3,368,372	+		PGA1_c32120	0.66	+0.9
3,368,380	-		PGA1_c32120	0.67	-0.9
3,368,444	-		PGA1_c32120	0.71	-0.5
3,368,451	-		PGA1_c32120	0.72	+0.5
3,368,457	-		PGA1_c32120	0.72	+0.8
3,368,457	-		PGA1_c32120	0.72	-0.5
3,368,464	+		PGA1_c32120	0.73	-0.3
3,368,464	+		PGA1_c32120	0.73	+0.5
3,368,472	-		PGA1_c32120	0.73	+0.8
3,368,481	-		PGA1_c32120	0.74	-1.3
3,368,501	+		PGA1_c32120	0.75	+1.9
3,368,602	-		PGA1_c32120	0.82	-0.6
3,368,611	-		PGA1_c32120	0.83	-0.6
3,368,638	+		PGA1_c32120	0.85	+1.9
3,368,657	-		PGA1_c32120	0.86	+0.1
3,368,702	-		PGA1_c32120	0.89	+0.7
3,368,713	+		PGA1_c32120	0.90	+0.1
3,368,721	-				+0.5
3,368,721	-				+0.4
3,368,721	-				+1.0
3,368,721	-				+0.6
3,368,758	-				-0.3
3,368,804	+				+0.6
3,368,812	-				+0.7
3,368,812	-				-0.4
3,368,823	-				+3.6
3,368,840	-				-0.4
3,368,865	-				-0.2
3,368,875	-				+1.4
3,369,017	-				+1.5
3,369,092	-				+1.1
3,369,111	-				+1.0
3,369,111	-				+1.5
3,369,118	+		PGA1_c32130	0.10	+1.0
3,369,124	+		PGA1_c32130	0.11	+1.4
3,369,164	+		PGA1_c32130	0.14	+1.1
3,369,179	+		PGA1_c32130	0.15	-0.4
3,369,194	+		PGA1_c32130	0.16	-0.4
3,369,234	-		PGA1_c32130	0.19	+1.7
3,369,234	-		PGA1_c32130	0.19	-0.4
3,369,234	-		PGA1_c32130	0.19	-0.1
3,369,255	-		PGA1_c32130	0.21	-0.5
3,369,271	-		PGA1_c32130	0.22	+0.8
3,369,271	-		PGA1_c32130	0.22	+1.0
3,369,394	+		PGA1_c32130	0.31	+2.6
3,369,430	+		PGA1_c32130	0.34	-0.9
3,369,470	-		PGA1_c32130	0.37	-0.7
3,369,494	-		PGA1_c32130	0.39	+1.6
3,369,504	-		PGA1_c32130	0.40	+1.0
3,369,513	-		PGA1_c32130	0.41	+1.5
3,369,638	-		PGA1_c32130	0.50	-1.0
3,369,656	-		PGA1_c32130	0.52	+1.2
3,369,664	+		PGA1_c32130	0.52	+2.5
3,369,811	-		PGA1_c32130	0.64	+1.2
3,369,811	-		PGA1_c32130	0.64	+0.6
3,369,821	-		PGA1_c32130	0.65	+0.1
3,369,821	-		PGA1_c32130	0.65	-1.2
3,369,855	+		PGA1_c32130	0.67	-0.1