Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c32080

Experiment: m.b. nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. nitrite 6 mM
3,362,528	+		PGA1_c32070	0.34	+0.7
3,362,543	+		PGA1_c32070	0.35	-0.5
3,362,546	-		PGA1_c32070	0.36	+1.6
3,362,555	-		PGA1_c32070	0.36	+0.5
3,362,572	-		PGA1_c32070	0.38	+0.1
3,362,591	-		PGA1_c32070	0.39	-0.1
3,362,608	+		PGA1_c32070	0.41	+1.5
3,362,710	+		PGA1_c32070	0.49	+1.4
3,362,723	-		PGA1_c32070	0.50	+0.5
3,362,723	-		PGA1_c32070	0.50	+1.0
3,362,739	+		PGA1_c32070	0.52	-1.0
3,362,776	-		PGA1_c32070	0.55	-0.0
3,362,875	-		PGA1_c32070	0.63	-1.1
3,362,884	+		PGA1_c32070	0.64	+0.6
3,362,884	+		PGA1_c32070	0.64	-2.2
3,362,884	+		PGA1_c32070	0.64	-0.3
3,362,892	-		PGA1_c32070	0.65	+1.1
3,362,904	-		PGA1_c32070	0.66	+1.0
3,362,928	-		PGA1_c32070	0.68	+1.9
3,363,008	-		PGA1_c32070	0.75	+1.8
3,363,051	+		PGA1_c32070	0.78	-0.6
3,363,059	-		PGA1_c32070	0.79	+0.5
3,363,100	+		PGA1_c32070	0.82	+0.2
3,363,101	+		PGA1_c32070	0.82	+0.6
3,363,109	-		PGA1_c32070	0.83	+1.0
3,363,288	+				+1.4
3,363,313	+				-0.0
3,363,321	-				-0.4
3,363,323	+				-2.6
3,363,328	+				+0.7
3,363,328	+				+0.3
3,363,328	+				-0.9
3,363,331	-				-0.4
3,363,333	+				-0.8
3,363,336	-				+0.2
3,363,336	-				-1.2
3,363,338	+				+0.8
3,363,338	+				-0.7
3,363,346	-				+0.9
3,363,346	-				+0.8
3,363,346	-				-1.6
3,363,390	-				-1.0
3,363,451	+				+0.7
3,363,456	+				+0.4
3,363,459	-				-0.9
3,363,467	+				-0.1
3,363,467	+				-0.7
3,363,475	-				+1.5
3,363,484	+				+0.6
3,363,489	+				+0.8
3,363,489	+				+1.5
3,363,489	+				+0.8
3,363,489	+				-0.2
3,363,489	+				-0.7
3,363,489	+				-1.7
3,363,489	+				+0.6
3,363,489	+				+0.7
3,363,489	+				+1.5
3,363,489	+				+1.1
3,363,489	+				-1.0
3,363,489	+				-0.4
3,363,497	-				+0.2
3,363,497	-				+0.6
3,363,497	-				+0.4
3,363,497	-				+0.4
3,363,497	-				+0.8
3,363,497	-				+1.1
3,363,497	-				+2.3
3,363,497	-				+0.7
3,363,497	-				+0.8
3,363,497	-				-2.6
3,363,497	-				-0.2
3,363,497	-				-1.2
3,363,497	-				-2.0
3,363,497	-				+1.0
3,363,497	-				-2.5
3,363,625	+		PGA1_c32080	0.13	+0.3
3,363,645	-		PGA1_c32080	0.15	+0.6
3,363,645	-		PGA1_c32080	0.15	+0.4
3,363,645	-		PGA1_c32080	0.15	+1.3
3,363,645	-		PGA1_c32080	0.15	+0.2
3,363,658	+		PGA1_c32080	0.16	+0.4
3,363,680	-		PGA1_c32080	0.18	+0.5
3,363,741	+		PGA1_c32080	0.25	+0.5
3,363,742	+		PGA1_c32080	0.25	+0.9
3,363,742	+		PGA1_c32080	0.25	+0.6
3,363,750	-		PGA1_c32080	0.26	-1.2
3,363,750	-		PGA1_c32080	0.26	-3.0
3,363,795	-		PGA1_c32080	0.30	-0.8
3,363,795	-		PGA1_c32080	0.30	+0.4
3,363,819	+		PGA1_c32080	0.33	-0.3
3,363,827	-		PGA1_c32080	0.34	+1.1
3,363,913	-		PGA1_c32080	0.43	-2.2
3,363,967	-		PGA1_c32080	0.49	+1.5
3,363,995	-		PGA1_c32080	0.52	+0.1
3,364,001	-		PGA1_c32080	0.52	-2.9
3,364,044	+		PGA1_c32080	0.57	-0.2
3,364,044	+		PGA1_c32080	0.57	+1.4
3,364,044	+		PGA1_c32080	0.57	+0.5
3,364,044	+		PGA1_c32080	0.57	+1.0
3,364,044	+		PGA1_c32080	0.57	+0.5
3,364,052	-		PGA1_c32080	0.58	-2.6
3,364,052	-		PGA1_c32080	0.58	+0.7
3,364,052	-		PGA1_c32080	0.58	-0.6
3,364,052	-		PGA1_c32080	0.58	-2.4
3,364,052	-		PGA1_c32080	0.58	+1.3
3,364,052	-		PGA1_c32080	0.58	-1.3
3,364,052	-		PGA1_c32080	0.58	+0.6
3,364,052	-		PGA1_c32080	0.58	-0.2
3,364,052	-		PGA1_c32080	0.58	-0.2
3,364,052	-		PGA1_c32080	0.58	-0.6
3,364,052	-		PGA1_c32080	0.58	+2.1
3,364,163	+		PGA1_c32080	0.69	-2.1
3,364,164	+		PGA1_c32080	0.69	+0.5
3,364,172	-		PGA1_c32080	0.70	+1.3
3,364,172	-		PGA1_c32080	0.70	-0.2
3,364,208	-		PGA1_c32080	0.74	+0.1
3,364,280	-		PGA1_c32080	0.82	-0.3
3,364,284	+		PGA1_c32080	0.82	+0.8
3,364,292	-		PGA1_c32080	0.83	+3.0
3,364,294	+		PGA1_c32080	0.83	+0.9
3,364,406	+				-0.9
3,364,413	+				-0.4
3,364,413	+				-1.6
3,364,414	-				-0.1
3,364,421	-				+0.4
3,364,428	+				-0.4
3,364,428	+				+1.4
3,364,436	-				-1.2
3,364,470	+				+2.6
3,364,473	-				+1.3
3,364,494	+				+2.0
3,364,541	-				+0.8
3,364,541	-				-0.6
3,364,558	-				+1.6
3,364,601	+				+0.8
3,364,601	+				+0.4
3,364,609	-		PGA1_c32090	0.11	+0.7
3,364,629	-		PGA1_c32090	0.13	+0.3
3,364,652	+		PGA1_c32090	0.16	+0.3
3,364,653	+		PGA1_c32090	0.16	+1.3
3,364,660	-		PGA1_c32090	0.17	-1.3
3,364,668	+		PGA1_c32090	0.18	-0.9
3,364,730	-		PGA1_c32090	0.25	+0.8
3,364,764	+		PGA1_c32090	0.30	+1.8
3,364,766	-		PGA1_c32090	0.30	+0.0
3,364,766	-		PGA1_c32090	0.30	+1.5
3,364,775	+		PGA1_c32090	0.31	-1.4
3,364,783	-		PGA1_c32090	0.32	+0.8
3,364,823	+		PGA1_c32090	0.37	+0.3
3,364,823	+		PGA1_c32090	0.37	+1.3
3,364,824	+		PGA1_c32090	0.37	-4.3
3,364,836	+		PGA1_c32090	0.38	+1.5
3,364,846	+		PGA1_c32090	0.40	+2.3
3,364,846	+		PGA1_c32090	0.40	+0.3
3,364,887	-		PGA1_c32090	0.45	-1.2
3,364,965	+		PGA1_c32090	0.54	+1.2
3,365,024	+		PGA1_c32090	0.61	-2.2
3,365,032	-		PGA1_c32090	0.62	-1.3
3,365,105	-		PGA1_c32090	0.71	-0.2
3,365,222	-		PGA1_c32090	0.86	-1.2
3,365,222	-		PGA1_c32090	0.86	+0.6
3,365,375	-				+0.5
3,365,377	-				+1.6
3,365,409	+				-1.6