Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03270

Experiment: m.b. nitrite 6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c03250 and PGA1_c03260 overlap by 4 nucleotidesPGA1_c03260 and PGA1_c03270 overlap by 4 nucleotidesPGA1_c03270 and PGA1_c03280 are separated by 11 nucleotides PGA1_c03250: PGA1_c03250 - molybdopterin-guanine dinucleotide biosynthesis protein B, at 311,094 to 311,585 _c03250 PGA1_c03260: PGA1_c03260 - hypothetical protein, at 311,582 to 312,394 _c03260 PGA1_c03270: PGA1_c03270 - molybdopterin molybdenumtransferase MoeA, at 312,391 to 313,647 _c03270 PGA1_c03280: PGA1_c03280 - hypothetical protein, at 313,659 to 314,672 _c03280 Position (kb) 312 313 314Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 311.411 kb on - strand, within PGA1_c03250at 311.411 kb on - strand, within PGA1_c03250at 311.420 kb on + strand, within PGA1_c03250at 311.422 kb on - strand, within PGA1_c03250at 311.452 kb on + strand, within PGA1_c03250at 311.499 kb on + strand, within PGA1_c03250at 311.508 kb on + strand, within PGA1_c03250at 311.537 kb on - strandat 311.598 kb on + strandat 311.617 kb on - strandat 311.630 kb on + strandat 311.637 kb on + strandat 311.637 kb on + strandat 311.668 kb on - strand, within PGA1_c03260at 311.707 kb on - strand, within PGA1_c03260at 311.757 kb on - strand, within PGA1_c03260at 311.841 kb on + strand, within PGA1_c03260at 311.871 kb on + strand, within PGA1_c03260at 311.871 kb on + strand, within PGA1_c03260at 311.871 kb on + strand, within PGA1_c03260at 311.913 kb on + strand, within PGA1_c03260at 311.952 kb on + strand, within PGA1_c03260at 311.962 kb on + strand, within PGA1_c03260at 311.975 kb on - strand, within PGA1_c03260at 311.984 kb on - strand, within PGA1_c03260at 311.990 kb on + strand, within PGA1_c03260at 311.998 kb on - strand, within PGA1_c03260at 312.016 kb on + strand, within PGA1_c03260at 312.048 kb on + strand, within PGA1_c03260at 312.050 kb on + strand, within PGA1_c03260at 312.050 kb on + strand, within PGA1_c03260at 312.050 kb on + strand, within PGA1_c03260at 312.050 kb on + strand, within PGA1_c03260at 312.056 kb on - strand, within PGA1_c03260at 312.058 kb on - strand, within PGA1_c03260at 312.121 kb on + strand, within PGA1_c03260at 312.162 kb on + strand, within PGA1_c03260at 312.187 kb on + strand, within PGA1_c03260at 312.207 kb on - strand, within PGA1_c03260at 312.226 kb on - strand, within PGA1_c03260at 312.236 kb on + strand, within PGA1_c03260at 312.265 kb on + strand, within PGA1_c03260at 312.292 kb on - strand, within PGA1_c03260at 312.345 kb on - strandat 312.345 kb on - strandat 312.364 kb on + strandat 312.442 kb on + strandat 312.536 kb on + strand, within PGA1_c03270at 312.618 kb on - strand, within PGA1_c03270at 312.692 kb on + strand, within PGA1_c03270at 312.747 kb on + strand, within PGA1_c03270at 312.755 kb on - strand, within PGA1_c03270at 312.874 kb on + strand, within PGA1_c03270at 312.887 kb on - strand, within PGA1_c03270at 312.893 kb on - strand, within PGA1_c03270at 312.971 kb on + strand, within PGA1_c03270at 313.011 kb on + strand, within PGA1_c03270at 313.069 kb on - strand, within PGA1_c03270at 313.069 kb on - strand, within PGA1_c03270at 313.137 kb on + strand, within PGA1_c03270at 313.137 kb on - strand, within PGA1_c03270at 313.150 kb on - strand, within PGA1_c03270at 313.150 kb on - strand, within PGA1_c03270at 313.202 kb on + strand, within PGA1_c03270at 313.350 kb on + strand, within PGA1_c03270at 313.402 kb on + strand, within PGA1_c03270at 313.534 kb on - strandat 313.534 kb on - strandat 313.534 kb on - strandat 313.560 kb on + strandat 313.610 kb on - strandat 313.641 kb on + strandat 313.669 kb on - strandat 313.699 kb on - strandat 313.699 kb on - strandat 313.699 kb on - strandat 313.699 kb on - strandat 313.802 kb on - strand, within PGA1_c03280at 313.847 kb on + strand, within PGA1_c03280at 313.855 kb on - strand, within PGA1_c03280at 314.042 kb on - strand, within PGA1_c03280at 314.042 kb on - strand, within PGA1_c03280at 314.044 kb on + strand, within PGA1_c03280at 314.109 kb on - strand, within PGA1_c03280at 314.121 kb on + strand, within PGA1_c03280at 314.215 kb on + strand, within PGA1_c03280at 314.299 kb on - strand, within PGA1_c03280at 314.342 kb on - strand, within PGA1_c03280at 314.380 kb on + strand, within PGA1_c03280at 314.419 kb on - strand, within PGA1_c03280at 314.426 kb on + strand, within PGA1_c03280at 314.434 kb on - strand, within PGA1_c03280at 314.451 kb on - strand, within PGA1_c03280at 314.504 kb on + strand, within PGA1_c03280at 314.613 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 6 mM
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311,411 - PGA1_c03250 0.64 -0.9
311,411 - PGA1_c03250 0.64 +1.3
311,420 + PGA1_c03250 0.66 -1.5
311,422 - PGA1_c03250 0.67 +1.1
311,452 + PGA1_c03250 0.73 -0.7
311,499 + PGA1_c03250 0.82 +0.4
311,508 + PGA1_c03250 0.84 -0.2
311,537 - +0.3
311,598 + +0.7
311,617 - -0.0
311,630 + -1.3
311,637 + +0.3
311,637 + +0.7
311,668 - PGA1_c03260 0.11 +0.3
311,707 - PGA1_c03260 0.15 +1.1
311,757 - PGA1_c03260 0.22 +0.5
311,841 + PGA1_c03260 0.32 -2.9
311,871 + PGA1_c03260 0.36 +0.8
311,871 + PGA1_c03260 0.36 -0.4
311,871 + PGA1_c03260 0.36 -0.3
311,913 + PGA1_c03260 0.41 +0.6
311,952 + PGA1_c03260 0.46 +0.3
311,962 + PGA1_c03260 0.47 +1.5
311,975 - PGA1_c03260 0.48 -1.6
311,984 - PGA1_c03260 0.49 -1.0
311,990 + PGA1_c03260 0.50 -1.0
311,998 - PGA1_c03260 0.51 -0.5
312,016 + PGA1_c03260 0.53 -0.5
312,048 + PGA1_c03260 0.57 +1.1
312,050 + PGA1_c03260 0.58 +0.3
312,050 + PGA1_c03260 0.58 -1.7
312,050 + PGA1_c03260 0.58 +0.7
312,050 + PGA1_c03260 0.58 +0.8
312,056 - PGA1_c03260 0.58 +1.7
312,058 - PGA1_c03260 0.59 -1.6
312,121 + PGA1_c03260 0.66 -0.0
312,162 + PGA1_c03260 0.71 +0.9
312,187 + PGA1_c03260 0.74 +1.0
312,207 - PGA1_c03260 0.77 +1.1
312,226 - PGA1_c03260 0.79 +2.2
312,236 + PGA1_c03260 0.80 -2.7
312,265 + PGA1_c03260 0.84 +0.5
312,292 - PGA1_c03260 0.87 -2.3
312,345 - +0.3
312,345 - -2.7
312,364 + +1.4
312,442 + +3.0
312,536 + PGA1_c03270 0.12 +1.3
312,618 - PGA1_c03270 0.18 +0.7
312,692 + PGA1_c03270 0.24 -0.2
312,747 + PGA1_c03270 0.28 +1.1
312,755 - PGA1_c03270 0.29 +0.1
312,874 + PGA1_c03270 0.38 -0.1
312,887 - PGA1_c03270 0.39 +1.1
312,893 - PGA1_c03270 0.40 +3.2
312,971 + PGA1_c03270 0.46 -0.2
313,011 + PGA1_c03270 0.49 +1.0
313,069 - PGA1_c03270 0.54 +2.0
313,069 - PGA1_c03270 0.54 +1.3
313,137 + PGA1_c03270 0.59 +0.4
313,137 - PGA1_c03270 0.59 +1.1
313,150 - PGA1_c03270 0.60 +2.9
313,150 - PGA1_c03270 0.60 +0.0
313,202 + PGA1_c03270 0.65 -1.9
313,350 + PGA1_c03270 0.76 +1.2
313,402 + PGA1_c03270 0.80 +1.6
313,534 - -1.7
313,534 - +1.7
313,534 - +0.8
313,560 + +0.4
313,610 - -0.1
313,641 + +0.2
313,669 - -1.1
313,699 - -0.5
313,699 - +1.2
313,699 - +0.2
313,699 - -0.3
313,802 - PGA1_c03280 0.14 -0.9
313,847 + PGA1_c03280 0.19 -2.2
313,855 - PGA1_c03280 0.19 -1.5
314,042 - PGA1_c03280 0.38 -3.4
314,042 - PGA1_c03280 0.38 -1.3
314,044 + PGA1_c03280 0.38 -0.9
314,109 - PGA1_c03280 0.44 -2.4
314,121 + PGA1_c03280 0.46 +0.5
314,215 + PGA1_c03280 0.55 +1.1
314,299 - PGA1_c03280 0.63 -0.8
314,342 - PGA1_c03280 0.67 -0.4
314,380 + PGA1_c03280 0.71 -0.7
314,419 - PGA1_c03280 0.75 +0.4
314,426 + PGA1_c03280 0.76 -0.1
314,434 - PGA1_c03280 0.76 -0.4
314,451 - PGA1_c03280 0.78 -2.5
314,504 + PGA1_c03280 0.83 +0.2
314,613 + +0.9

Or see this region's nucleotide sequence